RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HOXC9P31274 260 aa40.6■■■■■ 4.09
CTCF-203ENST00000566078 EIF4A2Q14240 407 aaKnown RBP40.59■■■■■ 4.09
CTCF-203ENST00000566078 UBAP1LF5GYI3 381 aa40.58■■■■■ 4.09
CTCF-203ENST00000566078 COL16A1Q07092 1604 aaPredicted RBP40.58■■■■■ 4.09
CTCF-203ENST00000566078 ZBTB7CA1YPR0 619 aa40.57■■■■■ 4.09
CTCF-203ENST00000566078 PIP4K2BP78356 416 aa40.56■■■■■ 4.08
CTCF-203ENST00000566078 CERKQ8TCT0 537 aa40.56■■■■■ 4.08
CTCF-203ENST00000566078 CABLES1Q8TDN4 633 aa40.56■■■■■ 4.08
CTCF-203ENST00000566078 ARHGEF25Q86VW2 580 aa40.55■■■■■ 4.08
CTCF-203ENST00000566078 COL22A1Q8NFW1 1626 aaPredicted RBP40.53■■■■■ 4.08
CTCF-203ENST00000566078 RUNDC1Q96C34 613 aa40.53■■■■■ 4.08
CTCF-203ENST00000566078 COL18A1P39060 1754 aa40.52■■■■■ 4.08
CTCF-203ENST00000566078 IP6K1Q92551 441 aa40.52■■■■■ 4.08
CTCF-203ENST00000566078 RGPD2P0DJD1 1756 aa40.52■■■■■ 4.08
CTCF-203ENST00000566078 SALL2Q9Y467 1007 aaPredicted RBP40.49■■■■■ 4.07
CTCF-203ENST00000566078 ZC3H6P61129 1189 aaKnown RBP40.49■■■■■ 4.07
CTCF-203ENST00000566078 LRRC59Q96AG4 307 aaKnown RBP40.48■■■■■ 4.07
CTCF-203ENST00000566078 ABCC6O95255 1503 aa40.47■■■■■ 4.07
CTCF-203ENST00000566078 APAF1O14727 1248 aa40.46■■■■■ 4.07
CTCF-203ENST00000566078 HMOX1P09601 288 aa40.45■■■■■ 4.07
CTCF-203ENST00000566078 FCHSD2O94868 740 aa40.45■■■■■ 4.07
CTCF-203ENST00000566078 RSPH6AQ9H0K4 717 aa40.45■■■■■ 4.07
CTCF-203ENST00000566078 PNNQ9H307 717 aaKnown RBP40.44■■■■■ 4.06
CTCF-203ENST00000566078 PLEKHF1Q96S99 279 aa40.43■■■■■ 4.06
CTCF-203ENST00000566078 LTV1Q96GA3 475 aaPredicted RBP40.42■■■■■ 4.06
CTCF-203ENST00000566078 CPDO75976 1380 aa40.42■■■■■ 4.06
CTCF-203ENST00000566078 MAPK8IP3Q9UPT6 1336 aa40.41■■■■■ 4.06
CTCF-203ENST00000566078 HAP1P54257 671 aaPredicted RBP40.41■■■■■ 4.06
CTCF-203ENST00000566078 KIAA0232Q92628 1395 aa40.4■■■■■ 4.06
CTCF-203ENST00000566078 PRKAR2BP31323 418 aa40.39■■■■■ 4.06
CTCF-203ENST00000566078 TCP11L2Q8N4U5 519 aa40.38■■■■■ 4.06
CTCF-203ENST00000566078 FAM208AQ9UK61 1670 aaKnown RBP40.38■■■■■ 4.05
CTCF-203ENST00000566078 DLG5Q8TDM6 1919 aa40.38■■■■■ 4.05
CTCF-203ENST00000566078 IGSF1Q8N6C5 1336 aa40.37■■■■■ 4.05
CTCF-203ENST00000566078 SULT6B1Q6IMI4 303 aa40.37■■■■■ 4.05
CTCF-203ENST00000566078 CAMTA1Q9Y6Y1 1673 aa40.37■■■■■ 4.05
CTCF-203ENST00000566078 AEBP1Q8IUX7 1158 aa40.36■■■■■ 4.05
CTCF-203ENST00000566078 EYA1Q99502 592 aa40.36■■■■■ 4.05
CTCF-203ENST00000566078 LMO7Q8WWI1 1683 aa40.36■■■■■ 4.05
CTCF-203ENST00000566078 AXIN2Q9Y2T1 843 aa40.34■■■■■ 4.05
CTCF-203ENST00000566078 NEFMP07197 916 aa40.32■■■■■ 4.05
CTCF-203ENST00000566078 RRP7AQ9Y3A4 280 aaKnown RBP40.32■■■■■ 4.05
CTCF-203ENST00000566078 KDRP35968 1356 aa40.31■■■■■ 4.04
CTCF-203ENST00000566078 CHRNA2Q15822 529 aa40.31■■■■■ 4.04
CTCF-203ENST00000566078 NGEFQ8N5V2 710 aa40.31■■■■■ 4.04
CTCF-203ENST00000566078 ANKRD24Q8TF21 1146 aa40.31■■■■■ 4.04
CTCF-203ENST00000566078 NEUROD2Q15784 382 aa40.29■■■■■ 4.04
CTCF-203ENST00000566078 PRDM11Q9NQV5 511 aa40.28■■■■■ 4.04
CTCF-203ENST00000566078 PHACTR3Q96KR7 559 aa40.26■■■■■ 4.04
CTCF-203ENST00000566078 ERBB3P21860 1342 aa40.26■■■■■ 4.04
CTCF-203ENST00000566078 ZNF521Q96K83 1311 aa40.26■■■■■ 4.04
CTCF-203ENST00000566078 COL14A1Q05707 1796 aaKnown RBP40.25■■■■■ 4.03
CTCF-203ENST00000566078 TMPOP42166 694 aaKnown RBP40.24■■■■■ 4.03
CTCF-203ENST00000566078 PDE3BQ13370 1112 aa40.23■■■■■ 4.03
CTCF-203ENST00000566078 NBPF6Q5VWK0 638 aa40.22■■■■■ 4.03
CTCF-203ENST00000566078 USHBP1Q8N6Y0 703 aa40.22■■■■■ 4.03
CTCF-203ENST00000566078 NBPF4Q96M43 638 aa40.22■■■■■ 4.03
CTCF-203ENST00000566078 NCAPD2Q15021 1401 aa40.2■■■■■ 4.03
CTCF-203ENST00000566078 NCBP3Q53F19 620 aaKnown RBP40.2■■■■■ 4.03
CTCF-203ENST00000566078 NFE2L2Q16236 605 aa40.18■■■■■ 4.02
CTCF-203ENST00000566078 CCDC27Q2M243 656 aa40.18■■■■■ 4.02
CTCF-203ENST00000566078 WWC1Q8IX03 1113 aa40.17■■■■■ 4.02
CTCF-203ENST00000566078 PLCH1Q4KWH8 1693 aa40.16■■■■■ 4.02
CTCF-203ENST00000566078 PHF23Q9BUL5 403 aaPredicted RBP40.16■■■■■ 4.02
CTCF-203ENST00000566078 RIPK4P57078 832 aa40.16■■■■■ 4.02
CTCF-203ENST00000566078 COL5A2P05997 1499 aaPredicted RBP40.15■■■■■ 4.02
CTCF-203ENST00000566078 CDCA7LQ96GN5 454 aa40.15■■■■■ 4.02
CTCF-203ENST00000566078 GOLGA2Q08379 1002 aa40.13■■■■■ 4.02
CTCF-203ENST00000566078 CSB-PGBD3P0DP91 1061 aa40.13■■■■■ 4.01
CTCF-203ENST00000566078 FAM83GA6ND36 823 aa40.11■■■■■ 4.01
CTCF-203ENST00000566078 TRIM35Q9UPQ4 493 aa40.11■■■■■ 4.01
CTCF-203ENST00000566078 JCADQ9P266 1359 aa40.1■■■■■ 4.01
CTCF-203ENST00000566078 NLRP2Q9NX02 1062 aa40.09■■■■■ 4.01
CTCF-203ENST00000566078 WDR17Q8IZU2 1322 aa40.05■■■■■ 4
CTCF-203ENST00000566078 WDR63Q8IWG1 891 aa40.05■■■■■ 4
CTCF-203ENST00000566078 VIRMAQ69YN4 1812 aaKnown RBP40.03■■■■■ 4
CTCF-203ENST00000566078 NRAPQ86VF7 1730 aa40.03■■■■■ 4
CTCF-203ENST00000566078 NUTM2BA6NNL0 878 aaPredicted RBP40.02■■■■■ 4
CTCF-203ENST00000566078 NUTM2EB1AL46 878 aaPredicted RBP40.02■■■■■ 4
CTCF-203ENST00000566078 MTHFSDQ2M296 383 aaKnown RBP40.02■■■■■ 4
CTCF-203ENST00000566078 NUTM2AQ8IVF1 878 aaPredicted RBP40.02■■■■■ 4
CTCF-203ENST00000566078 SLFN5Q08AF3 891 aa40.02■■■■■ 4
CTCF-203ENST00000566078 LMOD3Q0VAK6 560 aa40.02■■■■■ 4
CTCF-203ENST00000566078 PARP4Q9UKK3 1724 aaKnown RBP40.02■■■■■ 4
CTCF-203ENST00000566078 NWD2Q9ULI1 1742 aa40.01■■■■■ 4
CTCF-203ENST00000566078 GAS2L2Q8NHY3 880 aa40.01■■■■■ 4
CTCF-203ENST00000566078 SPINK5Q9NQ38 1064 aaPredicted RBP40.01■■■■■ 4
CTCF-203ENST00000566078 E9PSI1 815 aa40■■■■□ 3.99
CTCF-203ENST00000566078 ADAMTS2O95450 1211 aa40■■■■□ 3.99
CTCF-203ENST00000566078 BTG4Q9NY30 223 aa39.99■■■■□ 3.99
CTCF-203ENST00000566078 HSPA1LP34931 641 aa39.98■■■■□ 3.99
CTCF-203ENST00000566078 STRN4Q9NRL3 753 aa39.98■■■■□ 3.99
CTCF-203ENST00000566078 EVA1CP58658 441 aa39.97■■■■□ 3.99
CTCF-203ENST00000566078 PKD1L3Q7Z443 1732 aa39.96■■■■□ 3.99
CTCF-203ENST00000566078 DUSP27Q5VZP5 1158 aa39.96■■■■□ 3.99
CTCF-203ENST00000566078 TOM1L2Q6ZVM7 507 aa39.96■■■■□ 3.99
CTCF-203ENST00000566078 TRMT2AQ8IZ69 625 aaKnown RBP39.94■■■■□ 3.99
CTCF-203ENST00000566078 MEGF6O75095 1541 aa39.94■■■■□ 3.98
CTCF-203ENST00000566078 LRRC37A3O60309 1634 aa39.92■■■■□ 3.98
CTCF-203ENST00000566078 WNK3Q9BYP7 1800 aa39.92■■■■□ 3.98
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms