RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 AKT1S1Q96B36 256 aa13.95□□□□□ -0.18
SMPD3-206ENST00000566009 NMRK2Q9NPI5 230 aa13.95□□□□□ -0.18
SMPD3-206ENST00000566009 KNDC1Q76NI1 1749 aa13.95□□□□□ -0.18
SMPD3-206ENST00000566009 PNPLA7Q6ZV29 1317 aa13.94□□□□□ -0.18
SMPD3-206ENST00000566009 ADGRF5Q8IZF2 1346 aa13.94□□□□□ -0.18
SMPD3-206ENST00000566009 PHRF1Q9P1Y6 1649 aaKnown RBP13.94□□□□□ -0.18
SMPD3-206ENST00000566009 CRB1P82279 1406 aa13.94□□□□□ -0.18
SMPD3-206ENST00000566009 FSTL1Q12841 308 aa13.94□□□□□ -0.18
SMPD3-206ENST00000566009 FAM50AQ14320 339 aaKnown RBP13.94□□□□□ -0.18
SMPD3-206ENST00000566009 NUTM2GQ5VZR2 741 aa13.94□□□□□ -0.18
SMPD3-206ENST00000566009 LRRC4BQ9NT99 713 aa13.94□□□□□ -0.18
SMPD3-206ENST00000566009 SAFB2Q14151 953 aaKnown RBP eCLIP13.93□□□□□ -0.18
SMPD3-206ENST00000566009 NGDNQ8NEJ9 315 aaKnown RBP13.93□□□□□ -0.18
SMPD3-206ENST00000566009 VPS8Q8N3P4 1428 aa13.92□□□□□ -0.18
SMPD3-206ENST00000566009 YTHDC2Q9H6S0 1430 aaKnown RBP13.92□□□□□ -0.18
SMPD3-206ENST00000566009 TULP4Q9NRJ4 1543 aa13.92□□□□□ -0.18
SMPD3-206ENST00000566009 CD2APQ9Y5K6 639 aa13.92□□□□□ -0.18
SMPD3-206ENST00000566009 LMO7Q8WWI1 1683 aa13.91□□□□□ -0.18
SMPD3-206ENST00000566009 PPLO60437 1756 aa13.91□□□□□ -0.18
SMPD3-206ENST00000566009 MLLT1Q03111 559 aaPredicted RBP13.91□□□□□ -0.18
SMPD3-206ENST00000566009 C16orf71Q8IYS4 520 aaPredicted RBP13.91□□□□□ -0.18
SMPD3-206ENST00000566009 ANKRD30BQ9BXX2 1392 aa13.91□□□□□ -0.18
SMPD3-206ENST00000566009 COL5A2P05997 1499 aaPredicted RBP13.91□□□□□ -0.18
SMPD3-206ENST00000566009 CPDO75976 1380 aa13.9□□□□□ -0.18
SMPD3-206ENST00000566009 PRR36Q9H6K5 1346 aa13.9□□□□□ -0.19
SMPD3-206ENST00000566009 TFCP2L1Q9NZI6 479 aa13.89□□□□□ -0.19
SMPD3-206ENST00000566009 ACSBG1Q96GR2 724 aa13.88□□□□□ -0.19
SMPD3-206ENST00000566009 PRAM1Q96QH2 718 aa13.88□□□□□ -0.19
SMPD3-206ENST00000566009 AKAP12Q02952 1782 aa13.87□□□□□ -0.19
SMPD3-206ENST00000566009 TOM1L2Q6ZVM7 507 aa13.87□□□□□ -0.19
SMPD3-206ENST00000566009 HIRIP3Q9BW71 556 aaPredicted RBP13.87□□□□□ -0.19
SMPD3-206ENST00000566009 CDCA7Q9BWT1 371 aaPredicted RBP13.87□□□□□ -0.19
SMPD3-206ENST00000566009 QSER1Q2KHR3 1735 aa13.87□□□□□ -0.19
SMPD3-206ENST00000566009 EXOC5O00471 708 aa13.85□□□□□ -0.19
SMPD3-206ENST00000566009 PRDM10Q9NQV6 1147 aa13.85□□□□□ -0.19
SMPD3-206ENST00000566009 USP19O94966 1318 aa13.85□□□□□ -0.19
SMPD3-206ENST00000566009 BRD4O60885 1362 aaPredicted RBP13.84□□□□□ -0.19
SMPD3-206ENST00000566009 ROCK1Q13464 1354 aa13.84□□□□□ -0.19
SMPD3-206ENST00000566009 RGS19P49795 217 aa13.84□□□□□ -0.19
SMPD3-206ENST00000566009 IGSF1Q8N6C5 1336 aa13.84□□□□□ -0.19
SMPD3-206ENST00000566009 SLC27A3Q5K4L6 730 aa13.83□□□□□ -0.2
SMPD3-206ENST00000566009 MSL1Q68DK7 614 aa13.83□□□□□ -0.2
SMPD3-206ENST00000566009 ABHD8Q96I13 439 aa13.83□□□□□ -0.2
SMPD3-206ENST00000566009 POGKQ9P215 609 aa13.83□□□□□ -0.2
SMPD3-206ENST00000566009 MSH5O43196 834 aa13.82□□□□□ -0.2
SMPD3-206ENST00000566009 GCP02774 474 aa13.82□□□□□ -0.2
SMPD3-206ENST00000566009 NHSQ6T4R5 1651 aa13.82□□□□□ -0.2
SMPD3-206ENST00000566009 USP6P35125 1406 aa13.81□□□□□ -0.2
SMPD3-206ENST00000566009 FOXN1O15353 648 aa13.81□□□□□ -0.2
SMPD3-206ENST00000566009 COL23A1Q86Y22 540 aaPredicted RBP13.81□□□□□ -0.2
SMPD3-206ENST00000566009 ZBTB7CA1YPR0 619 aa13.8□□□□□ -0.2
SMPD3-206ENST00000566009 ABTB2Q8N961 1025 aa13.8□□□□□ -0.2
SMPD3-206ENST00000566009 KIAA1210Q9ULL0 1709 aa13.8□□□□□ -0.2
SMPD3-206ENST00000566009 EIF3AQ14152 1382 aaKnown RBP13.8□□□□□ -0.2
SMPD3-206ENST00000566009 TUBGCP6Q96RT7 1819 aa13.79□□□□□ -0.2
SMPD3-206ENST00000566009 KCNQ4P56696 695 aa13.79□□□□□ -0.2
SMPD3-206ENST00000566009 SMC1BQ8NDV3 1235 aa13.79□□□□□ -0.2
SMPD3-206ENST00000566009 RGL3Q3MIN7 710 aa13.78□□□□□ -0.2
SMPD3-206ENST00000566009 WASLO00401 505 aaPredicted RBP13.77□□□□□ -0.21
SMPD3-206ENST00000566009 BTAF1O14981 1849 aa13.77□□□□□ -0.21
SMPD3-206ENST00000566009 PIK3C2GO75747 1445 aa13.77□□□□□ -0.21
SMPD3-206ENST00000566009 APLP2Q06481 763 aa13.77□□□□□ -0.21
SMPD3-206ENST00000566009 WDR17Q8IZU2 1322 aa13.77□□□□□ -0.21
SMPD3-206ENST00000566009 WNK3Q9BYP7 1800 aa13.77□□□□□ -0.21
SMPD3-206ENST00000566009 C14orf93Q9H972 538 aaKnown RBP13.77□□□□□ -0.21
SMPD3-206ENST00000566009 RRAGCQ9HB90 399 aa13.77□□□□□ -0.21
SMPD3-206ENST00000566009 CICQ96RK0 1608 aaPredicted RBP13.76□□□□□ -0.21
SMPD3-206ENST00000566009 MINK1Q8N4C8 1332 aaPredicted RBP13.76□□□□□ -0.21
SMPD3-206ENST00000566009 NLRP13Q86W25 1043 aa13.76□□□□□ -0.21
SMPD3-206ENST00000566009 CARD10Q9BWT7 1032 aa13.75□□□□□ -0.21
SMPD3-206ENST00000566009 CCDC85CA6NKD9 419 aa13.74□□□□□ -0.21
SMPD3-206ENST00000566009 CTCFP49711 727 aaPredicted RBP13.74□□□□□ -0.21
SMPD3-206ENST00000566009 CFAP70Q5T0N1 1121 aa13.74□□□□□ -0.21
SMPD3-206ENST00000566009 AXIN2Q9Y2T1 843 aa13.74□□□□□ -0.21
SMPD3-206ENST00000566009 KDM2BQ8NHM5 1336 aa13.73□□□□□ -0.21
SMPD3-206ENST00000566009 C10orf71Q711Q0 1435 aa13.73□□□□□ -0.21
SMPD3-206ENST00000566009 ARHGAP27Q6ZUM4 889 aa13.72□□□□□ -0.21
SMPD3-206ENST00000566009 NUDT16Q96DE0 195 aaKnown RBP13.72□□□□□ -0.21
SMPD3-206ENST00000566009 KCPQ6ZWJ8 1503 aa13.71□□□□□ -0.21
SMPD3-206ENST00000566009 TRPM1Q7Z4N2 1603 aa13.71□□□□□ -0.22
SMPD3-206ENST00000566009 ACEP12821 1306 aa13.7□□□□□ -0.22
SMPD3-206ENST00000566009 CSB-PGBD3P0DP91 1061 aa13.7□□□□□ -0.22
SMPD3-206ENST00000566009 LBX1P52954 281 aa13.7□□□□□ -0.22
SMPD3-206ENST00000566009 C9orf131Q5VYM1 1079 aa13.7□□□□□ -0.22
SMPD3-206ENST00000566009 MKRN1Q9UHC7 482 aaKnown RBP13.7□□□□□ -0.22
SMPD3-206ENST00000566009 KAT6BQ8WYB5 2073 aa13.7□□□□□ -0.22
SMPD3-206ENST00000566009 AIDAQ96BJ3 306 aa13.69□□□□□ -0.22
SMPD3-206ENST00000566009 POLR3AO14802 1390 aaPredicted RBP13.69□□□□□ -0.22
SMPD3-206ENST00000566009 PLEKHG2Q9H7P9 1386 aa13.69□□□□□ -0.22
SMPD3-206ENST00000566009 PXDNLA1KZ92 1463 aa13.68□□□□□ -0.22
SMPD3-206ENST00000566009 BCS1LQ9Y276 419 aa13.68□□□□□ -0.22
SMPD3-206ENST00000566009 ITGAEP38570 1179 aa13.67□□□□□ -0.22
SMPD3-206ENST00000566009 TRAK1Q9UPV9 953 aa13.67□□□□□ -0.22
SMPD3-206ENST00000566009 COL18A1P39060 1754 aa13.66□□□□□ -0.22
SMPD3-206ENST00000566009 CCDC7Q96M83 1385 aa13.66□□□□□ -0.22
SMPD3-206ENST00000566009 SPATA31E1Q6ZUB1 1445 aa13.65□□□□□ -0.22
SMPD3-206ENST00000566009 ABCC6O95255 1503 aa13.65□□□□□ -0.22
SMPD3-206ENST00000566009 CCNL1Q9UK58 526 aaPredicted RBP13.65□□□□□ -0.22
SMPD3-206ENST00000566009 PPIP5K1Q6PFW1 1433 aa13.64□□□□□ -0.23
SMPD3-206ENST00000566009 FLAD1Q8NFF5 587 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms