RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CHD4Q14839 1912 aa15.33■□□□□ 0.05
SF3B3-204ENST00000563739 PLSCR1O15162 318 aa15.33■□□□□ 0.04
SF3B3-204ENST00000563739 NBPF14Q5TI25 921 aa15.33■□□□□ 0.04
SF3B3-204ENST00000563739 CCDC61Q9Y6R9 512 aa15.33■□□□□ 0.04
SF3B3-204ENST00000563739 SGIP1Q9BQI5 828 aa15.32■□□□□ 0.04
SF3B3-204ENST00000563739 CPSF1Q10570 1443 aaKnown RBP15.32■□□□□ 0.04
SF3B3-204ENST00000563739 EVA1CP58658 441 aa15.31■□□□□ 0.04
SF3B3-204ENST00000563739 ABTB2Q8N961 1025 aa15.31■□□□□ 0.04
SF3B3-204ENST00000563739 MARCH10Q8NA82 808 aaPredicted RBP15.31■□□□□ 0.04
SF3B3-204ENST00000563739 AXIN2Q9Y2T1 843 aa15.31■□□□□ 0.04
SF3B3-204ENST00000563739 USP54Q70EL1 1684 aa15.31■□□□□ 0.04
SF3B3-204ENST00000563739 NBPF1Q3BBV0 1214 aa15.3■□□□□ 0.04
SF3B3-204ENST00000563739 TUBGCP6Q96RT7 1819 aa15.3■□□□□ 0.04
SF3B3-204ENST00000563739 ZNF784Q8NCA9 323 aaPredicted RBP15.29■□□□□ 0.04
SF3B3-204ENST00000563739 PPP1R1BQ9UD71 204 aaPredicted RBP15.29■□□□□ 0.04
SF3B3-204ENST00000563739 ZBTB7AO95365 584 aa15.28■□□□□ 0.04
SF3B3-204ENST00000563739 BTAF1O14981 1849 aa15.28■□□□□ 0.04
SF3B3-204ENST00000563739 BRD4O60885 1362 aaPredicted RBP15.27■□□□□ 0.04
SF3B3-204ENST00000563739 WDR17Q8IZU2 1322 aa15.27■□□□□ 0.04
SF3B3-204ENST00000563739 QSER1Q2KHR3 1735 aa15.27■□□□□ 0.04
SF3B3-204ENST00000563739 MON2Q7Z3U7 1717 aa15.27■□□□□ 0.04
SF3B3-204ENST00000563739 STAC3Q96MF2 364 aa15.27■□□□□ 0.04
SF3B3-204ENST00000563739 BCL11BQ9C0K0 894 aaPredicted RBP15.27■□□□□ 0.04
SF3B3-204ENST00000563739 ABCC6O95255 1503 aa15.27■□□□□ 0.03
SF3B3-204ENST00000563739 GOLGB1Q14789 3259 aaKnown RBP15.27■□□□□ 0.03
SF3B3-204ENST00000563739 TNS2Q63HR2 1409 aa15.26■□□□□ 0.03
SF3B3-204ENST00000563739 NLRP13Q86W25 1043 aa15.26■□□□□ 0.03
SF3B3-204ENST00000563739 CABP2Q9NPB3 220 aa15.26■□□□□ 0.03
SF3B3-204ENST00000563739 DDB1Q16531 1140 aa15.25■□□□□ 0.03
SF3B3-204ENST00000563739 SHANK3Q9BYB0 1731 aa15.24■□□□□ 0.03
SF3B3-204ENST00000563739 TXNRD1Q16881 649 aa15.23■□□□□ 0.03
SF3B3-204ENST00000563739 FHDC1Q9C0D6 1143 aaPredicted RBP15.23■□□□□ 0.03
SF3B3-204ENST00000563739 ATF5Q9Y2D1 282 aaPredicted RBP15.23■□□□□ 0.03
SF3B3-204ENST00000563739 MAP3K5Q99683 1374 aa15.23■□□□□ 0.03
SF3B3-204ENST00000563739 CENPJQ9HC77 1338 aaPredicted RBP15.22■□□□□ 0.03
SF3B3-204ENST00000563739 LTN1O94822 1766 aa15.22■□□□□ 0.03
SF3B3-204ENST00000563739 C11orf95C9JLR9 678 aaPredicted RBP15.22■□□□□ 0.03
SF3B3-204ENST00000563739 ARHGEF25Q86VW2 580 aa15.22■□□□□ 0.03
SF3B3-204ENST00000563739 SYT17Q9BSW7 474 aa15.22■□□□□ 0.03
SF3B3-204ENST00000563739 C1QTNF8P60827 252 aa15.21■□□□□ 0.03
SF3B3-204ENST00000563739 SLC15A2Q16348 729 aa15.21■□□□□ 0.03
SF3B3-204ENST00000563739 CABP1Q9NZU7 370 aa15.21■□□□□ 0.03
SF3B3-204ENST00000563739 ZBTB7CA1YPR0 619 aa15.2■□□□□ 0.02
SF3B3-204ENST00000563739 NLRP6P59044 892 aa15.2■□□□□ 0.02
SF3B3-204ENST00000563739 TOM1L2Q6ZVM7 507 aa15.2■□□□□ 0.02
SF3B3-204ENST00000563739 SRPK2P78362 688 aaKnown RBP15.19■□□□□ 0.02
SF3B3-204ENST00000563739 ZNF827Q17R98 1081 aa15.19■□□□□ 0.02
SF3B3-204ENST00000563739 CD163L1Q9NR16 1453 aa15.19■□□□□ 0.02
SF3B3-204ENST00000563739 CARD10Q9BWT7 1032 aa15.18■□□□□ 0.02
SF3B3-204ENST00000563739 TTC21BQ7Z4L5 1316 aa15.17■□□□□ 0.02
SF3B3-204ENST00000563739 MTFR1LQ9H019 292 aa15.17■□□□□ 0.02
SF3B3-204ENST00000563739 LY75O60449 1722 aa15.17■□□□□ 0.02
SF3B3-204ENST00000563739 FAM208AQ9UK61 1670 aaKnown RBP15.16■□□□□ 0.02
SF3B3-204ENST00000563739 STK32BQ9NY57 414 aa15.16■□□□□ 0.02
SF3B3-204ENST00000563739 DOT1LQ8TEK3 1739 aa15.15■□□□□ 0.02
SF3B3-204ENST00000563739 CCDC7Q96M83 1385 aa15.15■□□□□ 0.02
SF3B3-204ENST00000563739 CDCA7Q9BWT1 371 aaPredicted RBP15.15■□□□□ 0.02
SF3B3-204ENST00000563739 LRRC4BQ9NT99 713 aa15.15■□□□□ 0.02
SF3B3-204ENST00000563739 USP31Q70CQ4 1352 aa15.12■□□□□ 0.01
SF3B3-204ENST00000563739 ACSBG1Q96GR2 724 aa15.12■□□□□ 0.01
SF3B3-204ENST00000563739 ERBB3P21860 1342 aa15.12■□□□□ 0.01
SF3B3-204ENST00000563739 RGPD2P0DJD1 1756 aa15.11■□□□□ 0.01
SF3B3-204ENST00000563739 DCAF8L1A6NGE4 600 aa15.11■□□□□ 0.01
SF3B3-204ENST00000563739 AKT1S1Q96B36 256 aa15.11■□□□□ 0.01
SF3B3-204ENST00000563739 ARXQ96QS3 562 aa15.11■□□□□ 0.01
SF3B3-204ENST00000563739 NSD2O96028 1365 aa15.11■□□□□ 0.01
SF3B3-204ENST00000563739 SOX12O15370 315 aa15.1■□□□□ 0.01
SF3B3-204ENST00000563739 ADRA2BP18089 450 aa15.1■□□□□ 0.01
SF3B3-204ENST00000563739 TTC21AQ8NDW8 1320 aa15.1■□□□□ 0.01
SF3B3-204ENST00000563739 SBNO2Q9Y2G9 1366 aa15.1■□□□□ 0.01
SF3B3-204ENST00000563739 PNPLA7Q6ZV29 1317 aa15.09■□□□□ 0.01
SF3B3-204ENST00000563739 EXOC5O00471 708 aa15.08■□□□□ 0
SF3B3-204ENST00000563739 KCNH5Q8NCM2 988 aa15.08■□□□□ 0
SF3B3-204ENST00000563739 TOGARAM1Q9Y4F4 1720 aa15.07■□□□□ 0
SF3B3-204ENST00000563739 NLGN2Q8NFZ4 835 aa15.07■□□□□ 0
SF3B3-204ENST00000563739 CSB-PGBD3P0DP91 1061 aa15.06■□□□□ 0
SF3B3-204ENST00000563739 EVC2Q86UK5 1308 aa15.06■□□□□ 0
SF3B3-204ENST00000563739 KTN1Q86UP2 1357 aaKnown RBP15.06■□□□□ 0
SF3B3-204ENST00000563739 KAT6BQ8WYB5 2073 aa15.05■□□□□ 0
SF3B3-204ENST00000563739 TAF1LQ8IZX4 1826 aa15.04■□□□□ -0
SF3B3-204ENST00000563739 NME9Q86XW9 330 aa15.04■□□□□ -0
SF3B3-204ENST00000563739 L3MBTL2Q969R5 705 aa15.04■□□□□ -0
SF3B3-204ENST00000563739 YBX3P16989 372 aaKnown RBP eCLIP15.03■□□□□ -03e-7■■□□□ 12.7
SF3B3-204ENST00000563739 KCNQ4P56696 695 aa15.03■□□□□ -0
SF3B3-204ENST00000563739 C5P01031 1676 aa15.03■□□□□ -0
SF3B3-204ENST00000563739 MEGF6O75095 1541 aa15.02■□□□□ -0
SF3B3-204ENST00000563739 IL2RBP14784 551 aa15.02■□□□□ -0
SF3B3-204ENST00000563739 ZNF692Q9BU19 519 aaPredicted RBP15.02■□□□□ -0
SF3B3-204ENST00000563739 ADCY9O60503 1353 aa15.01□□□□□ -0.01
SF3B3-204ENST00000563739 ANKRD24Q8TF21 1146 aa15.01□□□□□ -0.01
SF3B3-204ENST00000563739 NLRP2Q9NX02 1062 aa15□□□□□ -0.01
SF3B3-204ENST00000563739 EDC4Q6P2E9 1401 aaKnown RBP14.99□□□□□ -0.01
SF3B3-204ENST00000563739 A0A1W2PP64 1363 aa14.98□□□□□ -0.01
SF3B3-204ENST00000563739 ANKRD36BQ8N2N9 1353 aa14.98□□□□□ -0.01
SF3B3-204ENST00000563739 GIGYF1O75420 1035 aaPredicted RBP14.98□□□□□ -0.01
SF3B3-204ENST00000563739 GPR162Q16538 588 aa14.98□□□□□ -0.01
SF3B3-204ENST00000563739 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.98□□□□□ -0.01
SF3B3-204ENST00000563739 SLC16A10Q8TF71 515 aa14.98□□□□□ -0.01
SF3B3-204ENST00000563739 ATP10DQ9P241 1426 aa14.98□□□□□ -0.01
SF3B3-204ENST00000563739 ROCK2O75116 1388 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms