RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 UBAP1LF5GYI3 381 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 HOXC9P31274 260 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 CABLES1Q8TDN4 633 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 U2SURPO15042 1029 aaKnown RBP13.53□□□□□ -0.24
SMG1-208ENST00000563448 U2AF1L5P0DN76 240 aaPredicted RBP13.53□□□□□ -0.24
SMG1-208ENST00000563448 PIP4K2BP78356 416 aa13.53□□□□□ -0.24
SMG1-208ENST00000563448 U2AF1Q01081 240 aaKnown RBP eCLIP13.53□□□□□ -0.24
SMG1-208ENST00000563448 EIF4A2Q14240 407 aaKnown RBP13.53□□□□□ -0.24
SMG1-208ENST00000563448 ARHGEF25Q86VW2 580 aa13.53□□□□□ -0.24
SMG1-208ENST00000563448 DLG5Q8TDM6 1919 aa13.53□□□□□ -0.24
SMG1-208ENST00000563448 CCDC146Q8IYE0 955 aa13.52□□□□□ -0.24
SMG1-208ENST00000563448 IP6K1Q92551 441 aa13.51□□□□□ -0.25
SMG1-208ENST00000563448 ZBTB7CA1YPR0 619 aa13.51□□□□□ -0.25
SMG1-208ENST00000563448 LRRC59Q96AG4 307 aaKnown RBP13.51□□□□□ -0.25
SMG1-208ENST00000563448 ZBED9Q6R2W3 1325 aa13.5□□□□□ -0.25
SMG1-208ENST00000563448 ZC3H6P61129 1189 aaKnown RBP13.5□□□□□ -0.25
SMG1-208ENST00000563448 RUNDC1Q96C34 613 aa13.49□□□□□ -0.25
SMG1-208ENST00000563448 ABCC6O95255 1503 aa13.49□□□□□ -0.25
SMG1-208ENST00000563448 LMO7Q8WWI1 1683 aa13.49□□□□□ -0.25
SMG1-208ENST00000563448 CENPBP07199 599 aaPredicted RBP13.49□□□□□ -0.25
SMG1-208ENST00000563448 PLEKHF1Q96S99 279 aa13.49□□□□□ -0.25
SMG1-208ENST00000563448 FAM208AQ9UK61 1670 aaKnown RBP13.49□□□□□ -0.25
SMG1-208ENST00000563448 CAMTA1Q9Y6Y1 1673 aa13.49□□□□□ -0.25
SMG1-208ENST00000563448 CPDO75976 1380 aa13.48□□□□□ -0.25
SMG1-208ENST00000563448 RSPH6AQ9H0K4 717 aa13.48□□□□□ -0.25
SMG1-208ENST00000563448 APAF1O14727 1248 aa13.47□□□□□ -0.25
SMG1-208ENST00000563448 FCHSD2O94868 740 aa13.47□□□□□ -0.25
SMG1-208ENST00000563448 HMOX1P09601 288 aa13.47□□□□□ -0.25
SMG1-208ENST00000563448 AXIN2Q9Y2T1 843 aa13.47□□□□□ -0.25
SMG1-208ENST00000563448 KIAA0232Q92628 1395 aa13.47□□□□□ -0.25
SMG1-208ENST00000563448 LTV1Q96GA3 475 aaPredicted RBP13.47□□□□□ -0.25
SMG1-208ENST00000563448 SALL2Q9Y467 1007 aaPredicted RBP13.47□□□□□ -0.25
SMG1-208ENST00000563448 EYA1Q99502 592 aa13.46□□□□□ -0.25
SMG1-208ENST00000563448 IGSF1Q8N6C5 1336 aa13.46□□□□□ -0.26
SMG1-208ENST00000563448 PRKAR2BP31323 418 aa13.45□□□□□ -0.26
SMG1-208ENST00000563448 SULT6B1Q6IMI4 303 aa13.45□□□□□ -0.26
SMG1-208ENST00000563448 AEBP1Q8IUX7 1158 aa13.45□□□□□ -0.26
SMG1-208ENST00000563448 TCP11L2Q8N4U5 519 aa13.45□□□□□ -0.26
SMG1-208ENST00000563448 PNNQ9H307 717 aaKnown RBP13.45□□□□□ -0.26
SMG1-208ENST00000563448 COL14A1Q05707 1796 aaKnown RBP13.45□□□□□ -0.26
SMG1-208ENST00000563448 VIRMAQ69YN4 1812 aaKnown RBP13.44□□□□□ -0.26
SMG1-208ENST00000563448 HAP1P54257 671 aaPredicted RBP13.44□□□□□ -0.26
SMG1-208ENST00000563448 CHRNA2Q15822 529 aa13.44□□□□□ -0.26
SMG1-208ENST00000563448 ANKRD24Q8TF21 1146 aa13.44□□□□□ -0.26
SMG1-208ENST00000563448 KDRP35968 1356 aa13.43□□□□□ -0.26
SMG1-208ENST00000563448 PLCH1Q4KWH8 1693 aa13.43□□□□□ -0.26
SMG1-208ENST00000563448 MAPK8IP3Q9UPT6 1336 aa13.43□□□□□ -0.26
SMG1-208ENST00000563448 PHACTR3Q96KR7 559 aa13.42□□□□□ -0.26
SMG1-208ENST00000563448 RRP7AQ9Y3A4 280 aaKnown RBP13.42□□□□□ -0.26
SMG1-208ENST00000563448 ERBB3P21860 1342 aa13.42□□□□□ -0.26
SMG1-208ENST00000563448 NCAPD2Q15021 1401 aa13.42□□□□□ -0.26
SMG1-208ENST00000563448 NBPF6Q5VWK0 638 aa13.42□□□□□ -0.26
SMG1-208ENST00000563448 NBPF4Q96M43 638 aa13.42□□□□□ -0.26
SMG1-208ENST00000563448 PRDM11Q9NQV5 511 aa13.42□□□□□ -0.26
SMG1-208ENST00000563448 ZNF521Q96K83 1311 aa13.41□□□□□ -0.26
SMG1-208ENST00000563448 TMPOP42166 694 aaKnown RBP13.41□□□□□ -0.26
SMG1-208ENST00000563448 NEUROD2Q15784 382 aa13.4□□□□□ -0.26
SMG1-208ENST00000563448 NGEFQ8N5V2 710 aa13.4□□□□□ -0.26
SMG1-208ENST00000563448 USHBP1Q8N6Y0 703 aa13.4□□□□□ -0.26
SMG1-208ENST00000563448 NCBP3Q53F19 620 aaKnown RBP13.4□□□□□ -0.26
SMG1-208ENST00000563448 FBXO41Q8TF61 875 aa13.4□□□□□ -0.26
SMG1-208ENST00000563448 COL5A2P05997 1499 aaPredicted RBP13.39□□□□□ -0.27
SMG1-208ENST00000563448 NRAPQ86VF7 1730 aa13.39□□□□□ -0.27
SMG1-208ENST00000563448 FAM83GA6ND36 823 aa13.39□□□□□ -0.27
SMG1-208ENST00000563448 NEFMP07197 916 aa13.39□□□□□ -0.27
SMG1-208ENST00000563448 PHF23Q9BUL5 403 aaPredicted RBP13.39□□□□□ -0.27
SMG1-208ENST00000563448 NFE2L2Q16236 605 aa13.38□□□□□ -0.27
SMG1-208ENST00000563448 CCDC27Q2M243 656 aa13.38□□□□□ -0.27
SMG1-208ENST00000563448 WWC1Q8IX03 1113 aa13.38□□□□□ -0.27
SMG1-208ENST00000563448 NWD2Q9ULI1 1742 aa13.38□□□□□ -0.27
SMG1-208ENST00000563448 JCADQ9P266 1359 aa13.38□□□□□ -0.27
SMG1-208ENST00000563448 RIPK4P57078 832 aa13.37□□□□□ -0.27
SMG1-208ENST00000563448 PDE3BQ13370 1112 aa13.37□□□□□ -0.27
SMG1-208ENST00000563448 CDCA7LQ96GN5 454 aa13.37□□□□□ -0.27
SMG1-208ENST00000563448 TRIM35Q9UPQ4 493 aa13.37□□□□□ -0.27
SMG1-208ENST00000563448 WNK3Q9BYP7 1800 aa13.36□□□□□ -0.27
SMG1-208ENST00000563448 PARP4Q9UKK3 1724 aaKnown RBP13.36□□□□□ -0.27
SMG1-208ENST00000563448 HSPA1LP34931 641 aa13.36□□□□□ -0.27
SMG1-208ENST00000563448 PKD1L3Q7Z443 1732 aa13.36□□□□□ -0.27
SMG1-208ENST00000563448 CSB-PGBD3P0DP91 1061 aa13.35□□□□□ -0.27
SMG1-208ENST00000563448 WDR17Q8IZU2 1322 aa13.35□□□□□ -0.27
SMG1-208ENST00000563448 NUTM2BA6NNL0 878 aaPredicted RBP13.35□□□□□ -0.27
SMG1-208ENST00000563448 NUTM2EB1AL46 878 aaPredicted RBP13.35□□□□□ -0.27
SMG1-208ENST00000563448 GOLGA2Q08379 1002 aa13.35□□□□□ -0.27
SMG1-208ENST00000563448 MTHFSDQ2M296 383 aaKnown RBP13.35□□□□□ -0.27
SMG1-208ENST00000563448 NUTM2AQ8IVF1 878 aaPredicted RBP13.35□□□□□ -0.27
SMG1-208ENST00000563448 NLRP2Q9NX02 1062 aa13.35□□□□□ -0.27
SMG1-208ENST00000563448 ADAMTS2O95450 1211 aa13.34□□□□□ -0.27
SMG1-208ENST00000563448 SPINK5Q9NQ38 1064 aaPredicted RBP13.34□□□□□ -0.27
SMG1-208ENST00000563448 BTG4Q9NY30 223 aa13.34□□□□□ -0.27
SMG1-208ENST00000563448 SLFN5Q08AF3 891 aa13.34□□□□□ -0.27
SMG1-208ENST00000563448 WDR63Q8IWG1 891 aa13.34□□□□□ -0.27
SMG1-208ENST00000563448 SHANK3Q9BYB0 1731 aa13.33□□□□□ -0.28
SMG1-208ENST00000563448 STRN4Q9NRL3 753 aa13.33□□□□□ -0.28
SMG1-208ENST00000563448 LRRC37A3O60309 1634 aa13.32□□□□□ -0.28
SMG1-208ENST00000563448 LRP6O75581 1613 aa13.32□□□□□ -0.28
SMG1-208ENST00000563448 TRMT2AQ8IZ69 625 aaKnown RBP13.32□□□□□ -0.28
SMG1-208ENST00000563448 MEGF6O75095 1541 aa13.32□□□□□ -0.28
SMG1-208ENST00000563448 EVA1CP58658 441 aa13.32□□□□□ -0.28
SMG1-208ENST00000563448 LARP1Q6PKG0 1096 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms