RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 FCHSD2O94868 740 aa18.48■□□□□ 0.55
CLK3-209ENST00000562670 U2AF1L5P0DN76 240 aaPredicted RBP18.48■□□□□ 0.55
CLK3-209ENST00000562670 U2AF1Q01081 240 aaKnown RBP eCLIP18.48■□□□□ 0.55
CLK3-209ENST00000562670 EIF4A2Q14240 407 aaKnown RBP18.48■□□□□ 0.55
CLK3-209ENST00000562670 LMOD2Q6P5Q4 547 aa18.48■□□□□ 0.55
CLK3-209ENST00000562670 RUNDC1Q96C34 613 aa18.48■□□□□ 0.55
CLK3-209ENST00000562670 PHLPP1O60346 1717 aa18.48■□□□□ 0.55
CLK3-209ENST00000562670 KDRP35968 1356 aa18.47■□□□□ 0.55
CLK3-209ENST00000562670 SOX12O15370 315 aa18.47■□□□□ 0.55
CLK3-209ENST00000562670 HSP90AB2PQ58FF8 381 aa18.47■□□□□ 0.55
CLK3-209ENST00000562670 COL18A1P39060 1754 aa18.47■□□□□ 0.55
CLK3-209ENST00000562670 U2SURPO15042 1029 aaKnown RBP18.46■□□□□ 0.55
CLK3-209ENST00000562670 CERKQ8TCT0 537 aa18.46■□□□□ 0.55
CLK3-209ENST00000562670 LRRC59Q96AG4 307 aaKnown RBP18.46■□□□□ 0.55
CLK3-209ENST00000562670 FAM208AQ9UK61 1670 aaKnown RBP18.46■□□□□ 0.55
CLK3-209ENST00000562670 NCAPD2Q15021 1401 aa18.46■□□□□ 0.55
CLK3-209ENST00000562670 IGSF1Q8N6C5 1336 aa18.46■□□□□ 0.55
CLK3-209ENST00000562670 PLEKHF1Q96S99 279 aa18.45■□□□□ 0.54
CLK3-209ENST00000562670 RSPH6AQ9H0K4 717 aa18.45■□□□□ 0.54
CLK3-209ENST00000562670 LMO7Q8WWI1 1683 aa18.44■□□□□ 0.54
CLK3-209ENST00000562670 ZNF521Q96K83 1311 aa18.43■□□□□ 0.54
CLK3-209ENST00000562670 UBAP1LF5GYI3 381 aa18.42■□□□□ 0.54
CLK3-209ENST00000562670 PDE3BQ13370 1112 aa18.42■□□□□ 0.54
CLK3-209ENST00000562670 PLEKHG2Q9H7P9 1386 aa18.42■□□□□ 0.54
CLK3-209ENST00000562670 CCDC27Q2M243 656 aa18.41■□□□□ 0.54
CLK3-209ENST00000562670 CCDC146Q8IYE0 955 aa18.41■□□□□ 0.54
CLK3-209ENST00000562670 PHF23Q9BUL5 403 aaPredicted RBP18.41■□□□□ 0.54
CLK3-209ENST00000562670 APAF1O14727 1248 aa18.4■□□□□ 0.54
CLK3-209ENST00000562670 MAPK8IP3Q9UPT6 1336 aa18.4■□□□□ 0.54
CLK3-209ENST00000562670 KIAA0232Q92628 1395 aa18.4■□□□□ 0.54
CLK3-209ENST00000562670 TCP11L2Q8N4U5 519 aa18.38■□□□□ 0.53
CLK3-209ENST00000562670 ERBB3P21860 1342 aa18.38■□□□□ 0.53
CLK3-209ENST00000562670 NEFMP07197 916 aa18.37■□□□□ 0.53
CLK3-209ENST00000562670 PRKAR2BP31323 418 aa18.37■□□□□ 0.53
CLK3-209ENST00000562670 EYA1Q99502 592 aa18.37■□□□□ 0.53
CLK3-209ENST00000562670 COL14A1Q05707 1796 aaKnown RBP18.36■□□□□ 0.53
CLK3-209ENST00000562670 CABLES1Q8TDN4 633 aa18.36■□□□□ 0.53
CLK3-209ENST00000562670 RGPD5Q99666 1765 aa18.35■□□□□ 0.53
CLK3-209ENST00000562670 ZC3H6P61129 1189 aaKnown RBP18.35■□□□□ 0.53
CLK3-209ENST00000562670 SULT6B1Q6IMI4 303 aa18.35■□□□□ 0.53
CLK3-209ENST00000562670 HMOX1P09601 288 aa18.34■□□□□ 0.53
CLK3-209ENST00000562670 TMPOP42166 694 aaKnown RBP18.34■□□□□ 0.53
CLK3-209ENST00000562670 PIP4K2BP78356 416 aa18.34■□□□□ 0.53
CLK3-209ENST00000562670 ANKRD24Q8TF21 1146 aa18.34■□□□□ 0.53
CLK3-209ENST00000562670 COL5A2P05997 1499 aaPredicted RBP18.33■□□□□ 0.53
CLK3-209ENST00000562670 NFE2L2Q16236 605 aa18.33■□□□□ 0.52
CLK3-209ENST00000562670 AEBP1Q8IUX7 1158 aa18.33■□□□□ 0.52
CLK3-209ENST00000562670 PRDM11Q9NQV5 511 aa18.33■□□□□ 0.52
CLK3-209ENST00000562670 AXIN2Q9Y2T1 843 aa18.33■□□□□ 0.52
CLK3-209ENST00000562670 JCADQ9P266 1359 aa18.31■□□□□ 0.52
CLK3-209ENST00000562670 HAP1P54257 671 aaPredicted RBP18.31■□□□□ 0.52
CLK3-209ENST00000562670 WDR63Q8IWG1 891 aa18.31■□□□□ 0.52
CLK3-209ENST00000562670 WWC1Q8IX03 1113 aa18.31■□□□□ 0.52
CLK3-209ENST00000562670 RGPD2P0DJD1 1756 aa18.31■□□□□ 0.52
CLK3-209ENST00000562670 GOLGA2Q08379 1002 aa18.3■□□□□ 0.52
CLK3-209ENST00000562670 LMOD3Q0VAK6 560 aa18.3■□□□□ 0.52
CLK3-209ENST00000562670 IL16Q14005 1332 aa18.29■□□□□ 0.52
CLK3-209ENST00000562670 ZBTB7CA1YPR0 619 aa18.29■□□□□ 0.52
CLK3-209ENST00000562670 NBPF6Q5VWK0 638 aa18.29■□□□□ 0.52
CLK3-209ENST00000562670 PHACTR3Q96KR7 559 aa18.29■□□□□ 0.52
CLK3-209ENST00000562670 NBPF4Q96M43 638 aa18.29■□□□□ 0.52
CLK3-209ENST00000562670 WDR17Q8IZU2 1322 aa18.28■□□□□ 0.52
CLK3-209ENST00000562670 DLG5Q8TDM6 1919 aa18.28■□□□□ 0.52
CLK3-209ENST00000562670 LTV1Q96GA3 475 aaPredicted RBP18.28■□□□□ 0.52
CLK3-209ENST00000562670 NWD2Q9ULI1 1742 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 E9PSI1 815 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 PLEKHG5O94827 1062 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 CHRNA2Q15822 529 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 TRMT2AQ8IZ69 625 aaKnown RBP18.27■□□□□ 0.52
CLK3-209ENST00000562670 GAS2L2Q8NHY3 880 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 TRIM35Q9UPQ4 493 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 SALL2Q9Y467 1007 aaPredicted RBP18.27■□□□□ 0.52
CLK3-209ENST00000562670 PLCH1Q4KWH8 1693 aa18.27■□□□□ 0.52
CLK3-209ENST00000562670 RIPK4P57078 832 aa18.26■□□□□ 0.51
CLK3-209ENST00000562670 RRP7AQ9Y3A4 280 aaKnown RBP18.26■□□□□ 0.51
CLK3-209ENST00000562670 LRRC37A3O60309 1634 aa18.26■□□□□ 0.51
CLK3-209ENST00000562670 CALD1Q05682 793 aaKnown RBP18.25■□□□□ 0.51
CLK3-209ENST00000562670 SLFN5Q08AF3 891 aa18.25■□□□□ 0.51
CLK3-209ENST00000562670 NRAPQ86VF7 1730 aa18.25■□□□□ 0.51
CLK3-209ENST00000562670 SPATA31A6Q5VVP1 1343 aa18.24■□□□□ 0.51
CLK3-209ENST00000562670 PKD1L3Q7Z443 1732 aa18.24■□□□□ 0.51
CLK3-209ENST00000562670 SENP3-EIF4A1A0A087X0R7 540 aa18.24■□□□□ 0.51
CLK3-209ENST00000562670 PARP4Q9UKK3 1724 aaKnown RBP18.23■□□□□ 0.51
CLK3-209ENST00000562670 FAM83GA6ND36 823 aa18.23■□□□□ 0.51
CLK3-209ENST00000562670 HTATSF1O43719 755 aaKnown RBP18.23■□□□□ 0.51
CLK3-209ENST00000562670 DUSP27Q5VZP5 1158 aa18.23■□□□□ 0.51
CLK3-209ENST00000562670 CRB1P82279 1406 aa18.23■□□□□ 0.51
CLK3-209ENST00000562670 NEUROD2Q15784 382 aa18.22■□□□□ 0.51
CLK3-209ENST00000562670 AMOTQ4VCS5 1084 aa18.22■□□□□ 0.51
CLK3-209ENST00000562670 CDCA7LQ96GN5 454 aa18.22■□□□□ 0.51
CLK3-209ENST00000562670 OVOS2A0A0G2JMS6 1433 aa18.22■□□□□ 0.51
CLK3-209ENST00000562670 CSB-PGBD3P0DP91 1061 aa18.21■□□□□ 0.51
CLK3-209ENST00000562670 MTHFSDQ2M296 383 aaKnown RBP18.21■□□□□ 0.51
CLK3-209ENST00000562670 USHBP1Q8N6Y0 703 aa18.21■□□□□ 0.51
CLK3-209ENST00000562670 CARD10Q9BWT7 1032 aa18.21■□□□□ 0.51
CLK3-209ENST00000562670 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLK3-209ENST00000562670 SLIT2O94813 1529 aa18.21■□□□□ 0.51
CLK3-209ENST00000562670 ADAMTS7Q9UKP4 1686 aa18.21■□□□□ 0.51
CLK3-209ENST00000562670 MAP3K5Q99683 1374 aa18.2■□□□□ 0.5
CLK3-209ENST00000562670 MEGF6O75095 1541 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms