RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 BLMP54132 1417 aaPredicted RBP18.49■□□□□ 0.55
CDH1-204ENST00000562118 THSD7AQ9UPZ6 1657 aa18.48■□□□□ 0.55
CDH1-204ENST00000562118 VPS72Q15906 364 aa18.48■□□□□ 0.55
CDH1-204ENST00000562118 TRPC5Q9UL62 973 aaPredicted RBP18.48■□□□□ 0.55
CDH1-204ENST00000562118 CHRNA2Q15822 529 aa18.47■□□□□ 0.55
CDH1-204ENST00000562118 BTG4Q9NY30 223 aa18.47■□□□□ 0.55
CDH1-204ENST00000562118 PLEKHG5O94827 1062 aa18.45■□□□□ 0.54
CDH1-204ENST00000562118 AXIN2Q9Y2T1 843 aa18.45■□□□□ 0.54
CDH1-204ENST00000562118 KNSTRNQ9Y448 316 aa18.45■□□□□ 0.54
CDH1-204ENST00000562118 MAP3K19Q56UN5 1328 aa18.45■□□□□ 0.54
CDH1-204ENST00000562118 QTRT2Q9H974 415 aaKnown RBP18.44■□□□□ 0.54
CDH1-204ENST00000562118 ONECUT3O60422 494 aaPredicted RBP18.43■□□□□ 0.54
CDH1-204ENST00000562118 RBM6P78332 1123 aaKnown RBP18.43■□□□□ 0.54
CDH1-204ENST00000562118 SPATA31A5Q5VU36 1347 aa18.43■□□□□ 0.54
CDH1-204ENST00000562118 SPATA31A7Q8IWB4 1347 aa18.43■□□□□ 0.54
CDH1-204ENST00000562118 PARP4Q9UKK3 1724 aaKnown RBP18.43■□□□□ 0.54
CDH1-204ENST00000562118 RGS12O14924 1447 aa18.42■□□□□ 0.54
CDH1-204ENST00000562118 CRB1P82279 1406 aa18.42■□□□□ 0.54
CDH1-204ENST00000562118 IP6K1Q92551 441 aa18.42■□□□□ 0.54
CDH1-204ENST00000562118 GJD4Q96KN9 370 aaPredicted RBP18.42■□□□□ 0.54
CDH1-204ENST00000562118 ERBB3P21860 1342 aa18.42■□□□□ 0.54
CDH1-204ENST00000562118 SPATA31A1Q5TZJ5 1347 aa18.41■□□□□ 0.54
CDH1-204ENST00000562118 WDR17Q8IZU2 1322 aa18.41■□□□□ 0.54
CDH1-204ENST00000562118 FLT4P35916 1363 aa18.41■□□□□ 0.54
CDH1-204ENST00000562118 NCAPD2Q15021 1401 aa18.4■□□□□ 0.54
CDH1-204ENST00000562118 RGPD2P0DJD1 1756 aa18.4■□□□□ 0.54
CDH1-204ENST00000562118 BRWD3Q6RI45 1802 aa18.4■□□□□ 0.54
CDH1-204ENST00000562118 INSRP06213 1382 aa18.4■□□□□ 0.54
CDH1-204ENST00000562118 FBLN1P23142 703 aa18.39■□□□□ 0.53
CDH1-204ENST00000562118 RXRBP28702 533 aa18.39■□□□□ 0.53
CDH1-204ENST00000562118 HOXC9P31274 260 aa18.39■□□□□ 0.53
CDH1-204ENST00000562118 ILDR2Q71H61 639 aa18.39■□□□□ 0.53
CDH1-204ENST00000562118 EP400Q96L91 3159 aa18.38■□□□□ 0.53
CDH1-204ENST00000562118 SOX12O15370 315 aa18.38■□□□□ 0.53
CDH1-204ENST00000562118 POLKQ9UBT6 870 aa18.38■□□□□ 0.53
CDH1-204ENST00000562118 DISP2A7MBM2 1401 aa18.38■□□□□ 0.53
CDH1-204ENST00000562118 RRS1Q15050 365 aaKnown RBP18.37■□□□□ 0.53
CDH1-204ENST00000562118 LARP1Q6PKG0 1096 aaKnown RBP18.37■□□□□ 0.53
CDH1-204ENST00000562118 LRRC37A3O60309 1634 aa18.37■□□□□ 0.53
CDH1-204ENST00000562118 RGPD1P0DJD0 1748 aa18.37■□□□□ 0.53
CDH1-204ENST00000562118 BARGINQ6ZT62 677 aa18.36■□□□□ 0.53
CDH1-204ENST00000562118 THRAP3Q9Y2W1 955 aaKnown RBP18.36■□□□□ 0.53
CDH1-204ENST00000562118 EMILIN1Q9Y6C2 1016 aa18.35■□□□□ 0.53
CDH1-204ENST00000562118 PARD3Q8TEW0 1356 aa18.34■□□□□ 0.53
CDH1-204ENST00000562118 CARD10Q9BWT7 1032 aa18.34■□□□□ 0.53
CDH1-204ENST00000562118 COL3A1P02461 1466 aaPredicted RBP18.33■□□□□ 0.53
CDH1-204ENST00000562118 ZNF316A6NFI3 1004 aaPredicted RBP18.33■□□□□ 0.52
CDH1-204ENST00000562118 MORC1Q86VD1 984 aa18.33■□□□□ 0.52
CDH1-204ENST00000562118 AMPHP49418 695 aa18.32■□□□□ 0.52
CDH1-204ENST00000562118 ANKRD24Q8TF21 1146 aa18.32■□□□□ 0.52
CDH1-204ENST00000562118 STRN4Q9NRL3 753 aa18.32■□□□□ 0.52
CDH1-204ENST00000562118 SHANK3Q9BYB0 1731 aa18.32■□□□□ 0.52
CDH1-204ENST00000562118 EVA1CP58658 441 aa18.31■□□□□ 0.52
CDH1-204ENST00000562118 HSP90AB2PQ58FF8 381 aa18.31■□□□□ 0.52
CDH1-204ENST00000562118 TCP11L2Q8N4U5 519 aa18.31■□□□□ 0.52
CDH1-204ENST00000562118 PLEKHG2Q9H7P9 1386 aa18.3■□□□□ 0.52
CDH1-204ENST00000562118 ZBTB7CA1YPR0 619 aa18.29■□□□□ 0.52
CDH1-204ENST00000562118 CC2D1BQ5T0F9 858 aaKnown RBP18.29■□□□□ 0.52
CDH1-204ENST00000562118 PKD1L3Q7Z443 1732 aa18.29■□□□□ 0.52
CDH1-204ENST00000562118 DDX10Q13206 875 aaKnown RBP18.28■□□□□ 0.52
CDH1-204ENST00000562118 TOM1L2Q6ZVM7 507 aa18.27■□□□□ 0.52
CDH1-204ENST00000562118 FAM98CQ17RN3 349 aaKnown RBP18.26■□□□□ 0.51
CDH1-204ENST00000562118 SEPT12Q8IYM1 358 aa18.26■□□□□ 0.51
CDH1-204ENST00000562118 TNS2Q63HR2 1409 aa18.25■□□□□ 0.51
CDH1-204ENST00000562118 TNNT2P45379 298 aaPredicted RBP18.25■□□□□ 0.51
CDH1-204ENST00000562118 CDCA7Q9BWT1 371 aaPredicted RBP18.25■□□□□ 0.51
CDH1-204ENST00000562118 CCDC9Q9Y3X0 531 aaKnown RBP18.25■□□□□ 0.51
CDH1-204ENST00000562118 BCL9O00512 1426 aa18.24■□□□□ 0.51
CDH1-204ENST00000562118 MEGF6O75095 1541 aa18.24■□□□□ 0.51
CDH1-204ENST00000562118 EIF4A2Q14240 407 aaKnown RBP18.24■□□□□ 0.51
CDH1-204ENST00000562118 NBPF6Q5VWK0 638 aa18.24■□□□□ 0.51
CDH1-204ENST00000562118 NBPF4Q96M43 638 aa18.24■□□□□ 0.51
CDH1-204ENST00000562118 IGSF1Q8N6C5 1336 aa18.23■□□□□ 0.51
CDH1-204ENST00000562118 OVOS2A0A0G2JMS6 1433 aa18.23■□□□□ 0.51
CDH1-204ENST00000562118 KDRP35968 1356 aa18.23■□□□□ 0.51
CDH1-204ENST00000562118 CSB-PGBD3P0DP91 1061 aa18.23■□□□□ 0.51
CDH1-204ENST00000562118 MTHFSP49914 203 aa18.23■□□□□ 0.51
CDH1-204ENST00000562118 SBF2Q86WG5 1849 aa18.23■□□□□ 0.51
CDH1-204ENST00000562118 PPP2R1AP30153 589 aa18.21■□□□□ 0.51
CDH1-204ENST00000562118 IL13P35225 146 aa18.21■□□□□ 0.51
CDH1-204ENST00000562118 NLRP2Q9NX02 1062 aa18.21■□□□□ 0.51
CDH1-204ENST00000562118 USP35Q9P2H5 1018 aa18.21■□□□□ 0.51
CDH1-204ENST00000562118 RALBP1Q15311 655 aa18.2■□□□□ 0.5
CDH1-204ENST00000562118 EYA1Q99502 592 aa18.2■□□□□ 0.5
CDH1-204ENST00000562118 TNS1Q9HBL0 1735 aaKnown RBP18.2■□□□□ 0.5
CDH1-204ENST00000562118 PPM1GO15355 546 aaPredicted RBP18.19■□□□□ 0.5
CDH1-204ENST00000562118 IL2RBP14784 551 aa18.19■□□□□ 0.5
CDH1-204ENST00000562118 LTV1Q96GA3 475 aaPredicted RBP18.19■□□□□ 0.5
CDH1-204ENST00000562118 KRT27Q7Z3Y8 459 aa18.18■□□□□ 0.5
CDH1-204ENST00000562118 NHSQ6T4R5 1651 aa18.15■□□□□ 0.5
CDH1-204ENST00000562118 SOCS7O14512 581 aa18.15■□□□□ 0.5
CDH1-204ENST00000562118 PRKRIP1Q9H875 184 aaPredicted RBP18.15■□□□□ 0.5
CDH1-204ENST00000562118 DDB1Q16531 1140 aa18.14■□□□□ 0.49
CDH1-204ENST00000562118 RGPD3A6NKT7 1758 aaPredicted RBP18.14■□□□□ 0.49
CDH1-204ENST00000562118 RGPD4Q7Z3J3 1758 aa18.14■□□□□ 0.49
CDH1-204ENST00000562118 USHBP1Q8N6Y0 703 aa18.13■□□□□ 0.49
CDH1-204ENST00000562118 MYBBP1AQ9BQG0 1328 aaKnown RBP18.13■□□□□ 0.49
CDH1-204ENST00000562118 DIAPH1O60610 1272 aaKnown RBP18.12■□□□□ 0.49
CDH1-204ENST00000562118 MARCH10Q8NA82 808 aaPredicted RBP18.12■□□□□ 0.49
CDH1-204ENST00000562118 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms