RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TERF2IPQ9NYB0 399 aa14.5□□□□□ -0.09
CLK3-205ENST00000561673 CRB1P82279 1406 aa14.49□□□□□ -0.09
CLK3-205ENST00000561673 SLC24A1O60721 1099 aa14.49□□□□□ -0.09
CLK3-205ENST00000561673 EN1Q05925 392 aaPredicted RBP14.49□□□□□ -0.09
CLK3-205ENST00000561673 TOM1L2Q6ZVM7 507 aa14.49□□□□□ -0.09
CLK3-205ENST00000561673 USP31Q70CQ4 1352 aa14.48□□□□□ -0.09
CLK3-205ENST00000561673 TRIM37O94972 964 aa14.48□□□□□ -0.09
CLK3-205ENST00000561673 A0A1W2PP64 1363 aa14.47□□□□□ -0.09
CLK3-205ENST00000561673 WDR17Q8IZU2 1322 aa14.47□□□□□ -0.09
CLK3-205ENST00000561673 EDC4Q6P2E9 1401 aaKnown RBP14.47□□□□□ -0.09
CLK3-205ENST00000561673 COL18A1P39060 1754 aa14.47□□□□□ -0.09
CLK3-205ENST00000561673 NFAT5O94916 1531 aa14.46□□□□□ -0.09
CLK3-205ENST00000561673 TIMELESSQ9UNS1 1208 aa14.46□□□□□ -0.09
CLK3-205ENST00000561673 MON2Q7Z3U7 1717 aa14.46□□□□□ -0.1
CLK3-205ENST00000561673 USP47Q96K76 1375 aa14.46□□□□□ -0.1
CLK3-205ENST00000561673 CSB-PGBD3P0DP91 1061 aa14.45□□□□□ -0.1
CLK3-205ENST00000561673 CARD10Q9BWT7 1032 aa14.45□□□□□ -0.1
CLK3-205ENST00000561673 CLSPNQ9HAW4 1339 aa14.44□□□□□ -0.1
CLK3-205ENST00000561673 DISP2A7MBM2 1401 aa14.44□□□□□ -0.1
CLK3-205ENST00000561673 APBA3O96018 575 aa14.44□□□□□ -0.1
CLK3-205ENST00000561673 TMF1P82094 1093 aa14.44□□□□□ -0.1
CLK3-205ENST00000561673 EZH2Q15910 746 aaKnown RBP14.44□□□□□ -0.1
CLK3-205ENST00000561673 CAMKK2Q96RR4 588 aa14.44□□□□□ -0.1
CLK3-205ENST00000561673 NINLQ9Y2I6 1382 aa14.44□□□□□ -0.1
CLK3-205ENST00000561673 DDB1Q16531 1140 aa14.43□□□□□ -0.1
CLK3-205ENST00000561673 RGPD1P0DJD0 1748 aa14.42□□□□□ -0.1
CLK3-205ENST00000561673 CDCA7Q9BWT1 371 aaPredicted RBP14.42□□□□□ -0.1
CLK3-205ENST00000561673 PSDA5PKW4 1024 aaPredicted RBP14.41□□□□□ -0.1
CLK3-205ENST00000561673 PARP4Q9UKK3 1724 aaKnown RBP14.41□□□□□ -0.1
CLK3-205ENST00000561673 OVOS2A0A0J9YW53 1432 aa14.41□□□□□ -0.1
CLK3-205ENST00000561673 OVOS2Q6IE36 1432 aa14.41□□□□□ -0.1
CLK3-205ENST00000561673 C11orf95C9JLR9 678 aaPredicted RBP14.4□□□□□ -0.1
CLK3-205ENST00000561673 MARCH10Q8NA82 808 aaPredicted RBP14.4□□□□□ -0.1
CLK3-205ENST00000561673 TNS1Q9HBL0 1735 aaKnown RBP14.4□□□□□ -0.1
CLK3-205ENST00000561673 ERBB3P21860 1342 aa14.4□□□□□ -0.1
CLK3-205ENST00000561673 USP54Q70EL1 1684 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 ANKRD36BQ8N2N9 1353 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 ANKRD24Q8TF21 1146 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 COG3Q96JB2 828 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 NLRP2Q9NX02 1062 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 ABCC6O95255 1503 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 RGPD5Q99666 1765 aa14.39□□□□□ -0.11
CLK3-205ENST00000561673 CCDC7Q96M83 1385 aa14.38□□□□□ -0.11
CLK3-205ENST00000561673 EXOC5O00471 708 aa14.38□□□□□ -0.11
CLK3-205ENST00000561673 FBLN1P23142 703 aa14.38□□□□□ -0.11
CLK3-205ENST00000561673 R3HDM1Q15032 1099 aaKnown RBP14.38□□□□□ -0.11
CLK3-205ENST00000561673 CDCA8Q53HL2 280 aa14.38□□□□□ -0.11
CLK3-205ENST00000561673 IP6K1Q92551 441 aa14.38□□□□□ -0.11
CLK3-205ENST00000561673 OVOS2A0A0G2JMS6 1433 aa14.38□□□□□ -0.11
CLK3-205ENST00000561673 FYB1O15117 783 aa14.37□□□□□ -0.11
CLK3-205ENST00000561673 PARD3Q8TEW0 1356 aa14.36□□□□□ -0.11
CLK3-205ENST00000561673 PTF1AQ7RTS3 328 aa14.36□□□□□ -0.11
CLK3-205ENST00000561673 CCER1Q8TC90 406 aaPredicted RBP14.36□□□□□ -0.11
CLK3-205ENST00000561673 LRRC37A3O60309 1634 aa14.36□□□□□ -0.11
CLK3-205ENST00000561673 PEAK1Q9H792 1746 aa14.35□□□□□ -0.11
CLK3-205ENST00000561673 BCL11BQ9C0K0 894 aaPredicted RBP14.35□□□□□ -0.11
CLK3-205ENST00000561673 GGNBP2Q9H3C7 697 aa14.35□□□□□ -0.11
CLK3-205ENST00000561673 MAP3K19Q56UN5 1328 aa14.35□□□□□ -0.11
CLK3-205ENST00000561673 BCL9O00512 1426 aa14.34□□□□□ -0.11
CLK3-205ENST00000561673 IL2RBP14784 551 aa14.34□□□□□ -0.11
CLK3-205ENST00000561673 LTV1Q96GA3 475 aaPredicted RBP14.34□□□□□ -0.11
CLK3-205ENST00000561673 CARD14Q9BXL6 1004 aa14.34□□□□□ -0.11
CLK3-205ENST00000561673 LTN1O94822 1766 aa14.33□□□□□ -0.12
CLK3-205ENST00000561673 PLSCR1O15162 318 aa14.33□□□□□ -0.12
CLK3-205ENST00000561673 HOXC9P31274 260 aa14.33□□□□□ -0.12
CLK3-205ENST00000561673 AMPHP49418 695 aa14.33□□□□□ -0.12
CLK3-205ENST00000561673 RRS1Q15050 365 aaKnown RBP14.32□□□□□ -0.12
CLK3-205ENST00000561673 WNK3Q9BYP7 1800 aa14.31□□□□□ -0.12
CLK3-205ENST00000561673 KCNQ2O43526 872 aa14.31□□□□□ -0.12
CLK3-205ENST00000561673 NBPF14Q5TI25 921 aa14.31□□□□□ -0.12
CLK3-205ENST00000561673 CNKSR2Q8WXI2 1034 aa14.31□□□□□ -0.12
CLK3-205ENST00000561673 TNS2Q63HR2 1409 aa14.31□□□□□ -0.12
CLK3-205ENST00000561673 PROM2Q8N271 834 aa14.3□□□□□ -0.12
CLK3-205ENST00000561673 HSPA5P11021 654 aaKnown RBP14.28□□□□□ -0.12
CLK3-205ENST00000561673 EIF4G2P78344 907 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLK3-205ENST00000561673 SBF2Q86WG5 1849 aa14.28□□□□□ -0.12
CLK3-205ENST00000561673 RREB1Q92766 1687 aa14.28□□□□□ -0.12
CLK3-205ENST00000561673 ACSBG1Q96GR2 724 aa14.28□□□□□ -0.12
CLK3-205ENST00000561673 NSD3Q9BZ95 1437 aa14.27□□□□□ -0.12
CLK3-205ENST00000561673 DDX54Q8TDD1 881 aaKnown RBP14.27□□□□□ -0.13
CLK3-205ENST00000561673 POLR3GLQ9BT43 218 aa14.27□□□□□ -0.13
CLK3-205ENST00000561673 RTL1A6NKG5 1358 aa14.26□□□□□ -0.13
CLK3-205ENST00000561673 HSP90AB2PQ58FF8 381 aa14.26□□□□□ -0.13
CLK3-205ENST00000561673 NBPF6Q5VWK0 638 aa14.26□□□□□ -0.13
CLK3-205ENST00000561673 NBPF4Q96M43 638 aa14.26□□□□□ -0.13
CLK3-205ENST00000561673 NUP188Q5SRE5 1749 aa14.26□□□□□ -0.13
CLK3-205ENST00000561673 LRP5O75197 1615 aa14.26□□□□□ -0.13
CLK3-205ENST00000561673 TXNRD1Q16881 649 aa14.25□□□□□ -0.13
CLK3-205ENST00000561673 ANO8Q9HCE9 1232 aaPredicted RBP14.25□□□□□ -0.13
CLK3-205ENST00000561673 MYOM1P52179 1685 aa14.24□□□□□ -0.13
CLK3-205ENST00000561673 USHBP1Q8N6Y0 703 aa14.24□□□□□ -0.13
CLK3-205ENST00000561673 INSRP06213 1382 aa14.23□□□□□ -0.13
CLK3-205ENST00000561673 CGNL1Q0VF96 1302 aa14.23□□□□□ -0.13
CLK3-205ENST00000561673 ZCRB1Q8TBF4 217 aaKnown RBP14.23□□□□□ -0.13
CLK3-205ENST00000561673 EMILIN1Q9Y6C2 1016 aa14.23□□□□□ -0.13
CLK3-205ENST00000561673 FLT4P35916 1363 aa14.22□□□□□ -0.13
CLK3-205ENST00000561673 RGPD3A6NKT7 1758 aaPredicted RBP14.22□□□□□ -0.13
CLK3-205ENST00000561673 RGPD4Q7Z3J3 1758 aa14.22□□□□□ -0.13
CLK3-205ENST00000561673 KIF24Q5T7B8 1368 aa14.22□□□□□ -0.13
CLK3-205ENST00000561673 FAM208AQ9UK61 1670 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms