RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SLIT3O75094 1523 aa16.65■□□□□ 0.26
USP3-220ENST00000561381 PDE3BQ13370 1112 aa16.64■□□□□ 0.25
USP3-220ENST00000561381 CAMKK2Q96RR4 588 aa16.63■□□□□ 0.25
USP3-220ENST00000561381 TTC21BQ7Z4L5 1316 aa16.63■□□□□ 0.25
USP3-220ENST00000561381 AATKQ6ZMQ8 1374 aa16.63■□□□□ 0.25
USP3-220ENST00000561381 APBA3O96018 575 aa16.62■□□□□ 0.25
USP3-220ENST00000561381 R3HDM1Q15032 1099 aaKnown RBP16.62■□□□□ 0.25
USP3-220ENST00000561381 AXIN2Q9Y2T1 843 aa16.62■□□□□ 0.25
USP3-220ENST00000561381 THRAP3Q9Y2W1 955 aaKnown RBP16.62■□□□□ 0.25
USP3-220ENST00000561381 CRB1P82279 1406 aa16.62■□□□□ 0.25
USP3-220ENST00000561381 SOX12O15370 315 aa16.61■□□□□ 0.25
USP3-220ENST00000561381 ZNF692Q9BU19 519 aaPredicted RBP16.61■□□□□ 0.25
USP3-220ENST00000561381 COL18A1P39060 1754 aa16.61■□□□□ 0.25
USP3-220ENST00000561381 AKAP12Q02952 1782 aa16.61■□□□□ 0.25
USP3-220ENST00000561381 LRP5O75197 1615 aa16.6■□□□□ 0.25
USP3-220ENST00000561381 CPSF1Q10570 1443 aaKnown RBP16.6■□□□□ 0.25
USP3-220ENST00000561381 CARD11Q9BXL7 1154 aa16.59■□□□□ 0.25
USP3-220ENST00000561381 PARP4Q9UKK3 1724 aaKnown RBP16.59■□□□□ 0.25
USP3-220ENST00000561381 TOM1L2Q6ZVM7 507 aa16.58■□□□□ 0.24
USP3-220ENST00000561381 ARHGEF25Q86VW2 580 aa16.58■□□□□ 0.24
USP3-220ENST00000561381 KTN1Q86UP2 1357 aaKnown RBP16.58■□□□□ 0.24
USP3-220ENST00000561381 TTC21AQ8NDW8 1320 aa16.57■□□□□ 0.24
USP3-220ENST00000561381 SBNO2Q9Y2G9 1366 aa16.56■□□□□ 0.24
USP3-220ENST00000561381 WDR17Q8IZU2 1322 aa16.56■□□□□ 0.24
USP3-220ENST00000561381 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.56■□□□□ 0.24
USP3-220ENST00000561381 KCNH5Q8NCM2 988 aa16.56■□□□□ 0.24
USP3-220ENST00000561381 RGPD5Q99666 1765 aa16.56■□□□□ 0.24
USP3-220ENST00000561381 LRRC37A3O60309 1634 aa16.55■□□□□ 0.24
USP3-220ENST00000561381 NFAT5O94916 1531 aa16.55■□□□□ 0.24
USP3-220ENST00000561381 CD163L1Q9NR16 1453 aa16.54■□□□□ 0.24
USP3-220ENST00000561381 PARD3Q8TEW0 1356 aa16.54■□□□□ 0.24
USP3-220ENST00000561381 TONSLQ96HA7 1378 aa16.54■□□□□ 0.24
USP3-220ENST00000561381 MON2Q7Z3U7 1717 aa16.54■□□□□ 0.24
USP3-220ENST00000561381 PEAK1Q9H792 1746 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 CSB-PGBD3P0DP91 1061 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 POLA2Q14181 598 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 DDB1Q16531 1140 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 PTF1AQ7RTS3 328 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 NME9Q86XW9 330 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 TMC1Q8TDI8 760 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 SLC12A5Q9H2X9 1139 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 OVOS2A0A0G2JMS6 1433 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 OVOS2A0A0J9YW53 1432 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 OVOS2Q6IE36 1432 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 RREB1Q92766 1687 aa16.53■□□□□ 0.24
USP3-220ENST00000561381 NUP188Q5SRE5 1749 aa16.52■□□□□ 0.24
USP3-220ENST00000561381 MARCH10Q8NA82 808 aaPredicted RBP16.51■□□□□ 0.23
USP3-220ENST00000561381 CARD10Q9BWT7 1032 aa16.51■□□□□ 0.23
USP3-220ENST00000561381 WNK3Q9BYP7 1800 aa16.51■□□□□ 0.23
USP3-220ENST00000561381 USP31Q70CQ4 1352 aa16.51■□□□□ 0.23
USP3-220ENST00000561381 SBF2Q86WG5 1849 aa16.49■□□□□ 0.23
USP3-220ENST00000561381 ZBTB22O15209 634 aa16.49■□□□□ 0.23
USP3-220ENST00000561381 C11orf95C9JLR9 678 aaPredicted RBP16.48■□□□□ 0.23
USP3-220ENST00000561381 HDGFL2Q7Z4V5 671 aaPredicted RBP16.48■□□□□ 0.23
USP3-220ENST00000561381 NBPF14Q5TI25 921 aa16.47■□□□□ 0.23
USP3-220ENST00000561381 CDCA7Q9BWT1 371 aaPredicted RBP16.47■□□□□ 0.23
USP3-220ENST00000561381 A0A1W2PP64 1363 aa16.47■□□□□ 0.23
USP3-220ENST00000561381 USP54Q70EL1 1684 aa16.46■□□□□ 0.23
USP3-220ENST00000561381 ST20-MTHFSA0A0A6YYL1 179 aa16.46■□□□□ 0.23
USP3-220ENST00000561381 TESK2Q96S53 571 aa16.46■□□□□ 0.23
USP3-220ENST00000561381 BCL11BQ9C0K0 894 aaPredicted RBP16.46■□□□□ 0.23
USP3-220ENST00000561381 EDC4Q6P2E9 1401 aaKnown RBP16.45■□□□□ 0.22
USP3-220ENST00000561381 ABCC6O95255 1503 aa16.45■□□□□ 0.22
USP3-220ENST00000561381 PLSCR1O15162 318 aa16.45■□□□□ 0.22
USP3-220ENST00000561381 TERF2IPQ9NYB0 399 aa16.45■□□□□ 0.22
USP3-220ENST00000561381 CCDC7Q96M83 1385 aa16.45■□□□□ 0.22
USP3-220ENST00000561381 ERBB3P21860 1342 aa16.45■□□□□ 0.22
USP3-220ENST00000561381 LTN1O94822 1766 aa16.44■□□□□ 0.22
USP3-220ENST00000561381 EXOC5O00471 708 aa16.44■□□□□ 0.22
USP3-220ENST00000561381 ANO8Q9HCE9 1232 aaPredicted RBP16.44■□□□□ 0.22
USP3-220ENST00000561381 NLRP2Q9NX02 1062 aa16.44■□□□□ 0.22
USP3-220ENST00000561381 ATF5Q9Y2D1 282 aaPredicted RBP16.44■□□□□ 0.22
USP3-220ENST00000561381 BCL9O00512 1426 aa16.44■□□□□ 0.22
USP3-220ENST00000561381 PROM2Q8N271 834 aa16.43■□□□□ 0.22
USP3-220ENST00000561381 PUS7Q96PZ0 661 aaKnown RBP16.43■□□□□ 0.22
USP3-220ENST00000561381 RGPD3A6NKT7 1758 aaPredicted RBP16.42■□□□□ 0.22
USP3-220ENST00000561381 RGPD4Q7Z3J3 1758 aa16.42■□□□□ 0.22
USP3-220ENST00000561381 ANKRD24Q8TF21 1146 aa16.42■□□□□ 0.22
USP3-220ENST00000561381 TNS2Q63HR2 1409 aa16.42■□□□□ 0.22
USP3-220ENST00000561381 KCNQ2O43526 872 aa16.41■□□□□ 0.22
USP3-220ENST00000561381 TRIM26Q12899 539 aaPredicted RBP16.41■□□□□ 0.22
USP3-220ENST00000561381 RBM42Q9BTD8 480 aaKnown RBP16.41■□□□□ 0.22
USP3-220ENST00000561381 IL2RBP14784 551 aa16.39■□□□□ 0.21
USP3-220ENST00000561381 FBLN1P23142 703 aa16.39■□□□□ 0.21
USP3-220ENST00000561381 ACSBG1Q96GR2 724 aa16.39■□□□□ 0.21
USP3-220ENST00000561381 PDGFDQ9GZP0 370 aaPredicted RBP16.39■□□□□ 0.21
USP3-220ENST00000561381 NINLQ9Y2I6 1382 aa16.38■□□□□ 0.21
USP3-220ENST00000561381 TXNRD1Q16881 649 aa16.37■□□□□ 0.21
USP3-220ENST00000561381 IP6K1Q92551 441 aa16.37■□□□□ 0.21
USP3-220ENST00000561381 LTV1Q96GA3 475 aaPredicted RBP16.37■□□□□ 0.21
USP3-220ENST00000561381 SPON1Q9HCB6 807 aa16.37■□□□□ 0.21
USP3-220ENST00000561381 MAP3K19Q56UN5 1328 aa16.36■□□□□ 0.21
USP3-220ENST00000561381 COG3Q96JB2 828 aa16.35■□□□□ 0.21
USP3-220ENST00000561381 USP47Q96K76 1375 aa16.35■□□□□ 0.21
USP3-220ENST00000561381 NHSQ6T4R5 1651 aa16.34■□□□□ 0.21
USP3-220ENST00000561381 CASZ1Q86V15 1759 aa16.34■□□□□ 0.21
USP3-220ENST00000561381 PPP1R1BQ9UD71 204 aaPredicted RBP16.34■□□□□ 0.21
USP3-220ENST00000561381 ANKRD36BQ8N2N9 1353 aa16.34■□□□□ 0.21
USP3-220ENST00000561381 ZBTB7AO95365 584 aa16.33■□□□□ 0.2
USP3-220ENST00000561381 HOXC9P31274 260 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms