RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 PELP1Q8IZL8 1130 aaKnown RBP13.58□□□□□ -0.24
SMAD3-215ENST00000560424 KLHL34Q8N239 644 aa13.58□□□□□ -0.24
SMAD3-215ENST00000560424 CDK19Q9BWU1 502 aa13.58□□□□□ -0.24
SMAD3-215ENST00000560424 CCDC61Q9Y6R9 512 aa13.58□□□□□ -0.24
SMAD3-215ENST00000560424 PROM2Q8N271 834 aa13.57□□□□□ -0.24
SMAD3-215ENST00000560424 CDCA7Q9BWT1 371 aaPredicted RBP13.57□□□□□ -0.24
SMAD3-215ENST00000560424 AKAP12Q02952 1782 aa13.57□□□□□ -0.24
SMAD3-215ENST00000560424 USP19O94966 1318 aa13.57□□□□□ -0.24
SMAD3-215ENST00000560424 PTF1AQ7RTS3 328 aa13.56□□□□□ -0.24
SMAD3-215ENST00000560424 DCAF11Q8TEB1 546 aa13.56□□□□□ -0.24
SMAD3-215ENST00000560424 TOPAZ1Q8N9V7 1692 aa13.54□□□□□ -0.24
SMAD3-215ENST00000560424 ARHGEF28Q8N1W1 1705 aaKnown RBP13.54□□□□□ -0.24
SMAD3-215ENST00000560424 PLEKHG3A1L390 1219 aa13.54□□□□□ -0.24
SMAD3-215ENST00000560424 CSB-PGBD3P0DP91 1061 aa13.54□□□□□ -0.24
SMAD3-215ENST00000560424 MARCH10Q8NA82 808 aaPredicted RBP13.54□□□□□ -0.24
SMAD3-215ENST00000560424 MAP3K5Q99683 1374 aa13.54□□□□□ -0.24
SMAD3-215ENST00000560424 EXOC5O00471 708 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 POLD1P28340 1107 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 NLRP6P59044 892 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 SGIP1Q9BQI5 828 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 PCGF6Q9BYE7 350 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 AATKQ6ZMQ8 1374 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 BCL9O00512 1426 aa13.53□□□□□ -0.24
SMAD3-215ENST00000560424 SRPK2P78362 688 aaKnown RBP13.52□□□□□ -0.25
SMAD3-215ENST00000560424 WDR17Q8IZU2 1322 aa13.52□□□□□ -0.25
SMAD3-215ENST00000560424 WNK3Q9BYP7 1800 aa13.52□□□□□ -0.25
SMAD3-215ENST00000560424 STAC3Q96MF2 364 aa13.51□□□□□ -0.25
SMAD3-215ENST00000560424 PPIP5K1Q6PFW1 1433 aa13.5□□□□□ -0.25
SMAD3-215ENST00000560424 BRD4O60885 1362 aaPredicted RBP13.49□□□□□ -0.25
SMAD3-215ENST00000560424 ACSBG1Q96GR2 724 aa13.48□□□□□ -0.25
SMAD3-215ENST00000560424 GRIN3BO60391 1043 aa13.47□□□□□ -0.25
SMAD3-215ENST00000560424 CARD10Q9BWT7 1032 aa13.47□□□□□ -0.25
SMAD3-215ENST00000560424 SLIT3O75094 1523 aa13.46□□□□□ -0.25
SMAD3-215ENST00000560424 SOX12O15370 315 aa13.46□□□□□ -0.25
SMAD3-215ENST00000560424 SLC16A10Q8TF71 515 aa13.46□□□□□ -0.25
SMAD3-215ENST00000560424 CPSF1Q10570 1443 aaKnown RBP13.46□□□□□ -0.26
SMAD3-215ENST00000560424 CCDC7Q96M83 1385 aa13.45□□□□□ -0.26
SMAD3-215ENST00000560424 SHANK3Q9BYB0 1731 aa13.45□□□□□ -0.26
SMAD3-215ENST00000560424 NHSQ6T4R5 1651 aa13.45□□□□□ -0.26
SMAD3-215ENST00000560424 KCNH5Q8NCM2 988 aa13.45□□□□□ -0.26
SMAD3-215ENST00000560424 AXIN2Q9Y2T1 843 aa13.45□□□□□ -0.26
SMAD3-215ENST00000560424 TNS2Q63HR2 1409 aa13.45□□□□□ -0.26
SMAD3-215ENST00000560424 GPBP1L1Q9HC44 474 aaPredicted RBP13.44□□□□□ -0.26
SMAD3-215ENST00000560424 CABP2Q9NPB3 220 aa13.44□□□□□ -0.26
SMAD3-215ENST00000560424 USP6P35125 1406 aa13.44□□□□□ -0.26
SMAD3-215ENST00000560424 ZNF827Q17R98 1081 aa13.43□□□□□ -0.26
SMAD3-215ENST00000560424 TFCP2L1Q9NZI6 479 aa13.43□□□□□ -0.26
SMAD3-215ENST00000560424 CEP350Q5VT06 3117 aa13.43□□□□□ -0.26
SMAD3-215ENST00000560424 COL18A1P39060 1754 aa13.43□□□□□ -0.26
SMAD3-215ENST00000560424 PAPPAQ13219 1627 aa13.42□□□□□ -0.26
SMAD3-215ENST00000560424 HSPA6P17066 643 aa13.42□□□□□ -0.26
SMAD3-215ENST00000560424 CABP1Q9NZU7 370 aa13.42□□□□□ -0.26
SMAD3-215ENST00000560424 KAT6BQ8WYB5 2073 aa13.42□□□□□ -0.26
SMAD3-215ENST00000560424 ATP10DQ9P241 1426 aa13.41□□□□□ -0.26
SMAD3-215ENST00000560424 GOLGB1Q14789 3259 aaKnown RBP13.41□□□□□ -0.26
SMAD3-215ENST00000560424 ARHGEF25Q86VW2 580 aa13.41□□□□□ -0.26
SMAD3-215ENST00000560424 NLGN2Q8NFZ4 835 aa13.41□□□□□ -0.26
SMAD3-215ENST00000560424 QRICH2Q9H0J4 1663 aa13.4□□□□□ -0.26
SMAD3-215ENST00000560424 CENPJQ9HC77 1338 aaPredicted RBP13.4□□□□□ -0.26
SMAD3-215ENST00000560424 RGPD5Q99666 1765 aa13.4□□□□□ -0.26
SMAD3-215ENST00000560424 MSH5O43196 834 aa13.4□□□□□ -0.26
SMAD3-215ENST00000560424 SLC27A3Q5K4L6 730 aa13.4□□□□□ -0.26
SMAD3-215ENST00000560424 BTAF1O14981 1849 aa13.4□□□□□ -0.26
SMAD3-215ENST00000560424 PIK3C2AO00443 1686 aa13.4□□□□□ -0.26
SMAD3-215ENST00000560424 ABCC6O95255 1503 aa13.39□□□□□ -0.27
SMAD3-215ENST00000560424 TRPM1Q7Z4N2 1603 aa13.39□□□□□ -0.27
SMAD3-215ENST00000560424 ZNF526Q8TF50 670 aaPredicted RBP13.39□□□□□ -0.27
SMAD3-215ENST00000560424 NLRP2Q9NX02 1062 aa13.39□□□□□ -0.27
SMAD3-215ENST00000560424 IL2RBP14784 551 aa13.38□□□□□ -0.27
SMAD3-215ENST00000560424 YBX3P16989 372 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMAD3-215ENST00000560424 AKT1S1Q96B36 256 aa13.38□□□□□ -0.27
SMAD3-215ENST00000560424 LRRC4BQ9NT99 713 aa13.38□□□□□ -0.27
SMAD3-215ENST00000560424 PNPLA7Q6ZV29 1317 aa13.38□□□□□ -0.27
SMAD3-215ENST00000560424 QSER1Q2KHR3 1735 aa13.37□□□□□ -0.27
SMAD3-215ENST00000560424 KIAA1210Q9ULL0 1709 aa13.36□□□□□ -0.27
SMAD3-215ENST00000560424 SYTL4Q96C24 671 aaPredicted RBP13.36□□□□□ -0.27
SMAD3-215ENST00000560424 ZNF692Q9BU19 519 aaPredicted RBP13.36□□□□□ -0.27
SMAD3-215ENST00000560424 TTC21BQ7Z4L5 1316 aa13.36□□□□□ -0.27
SMAD3-215ENST00000560424 RAB3GAP2Q9H2M9 1393 aa13.35□□□□□ -0.27
SMAD3-215ENST00000560424 TTC21AQ8NDW8 1320 aa13.35□□□□□ -0.27
SMAD3-215ENST00000560424 EVC2Q86UK5 1308 aa13.34□□□□□ -0.27
SMAD3-215ENST00000560424 DDX54Q8TDD1 881 aaKnown RBP13.33□□□□□ -0.28
SMAD3-215ENST00000560424 ERBB3P21860 1342 aa13.33□□□□□ -0.28
SMAD3-215ENST00000560424 COL24A1Q17RW2 1714 aa13.33□□□□□ -0.28
SMAD3-215ENST00000560424 NBPF1Q3BBV0 1214 aa13.32□□□□□ -0.28
SMAD3-215ENST00000560424 NFAT5O94916 1531 aa13.31□□□□□ -0.28
SMAD3-215ENST00000560424 KCNQ4P56696 695 aa13.31□□□□□ -0.28
SMAD3-215ENST00000560424 TUBGCP6Q96RT7 1819 aa13.31□□□□□ -0.28
SMAD3-215ENST00000560424 APLP1P51693 650 aa13.3□□□□□ -0.28
SMAD3-215ENST00000560424 MSL1Q68DK7 614 aa13.3□□□□□ -0.28
SMAD3-215ENST00000560424 ANKRD24Q8TF21 1146 aa13.3□□□□□ -0.28
SMAD3-215ENST00000560424 CCNL1Q9UK58 526 aaPredicted RBP13.3□□□□□ -0.28
SMAD3-215ENST00000560424 KTN1Q86UP2 1357 aaKnown RBP13.3□□□□□ -0.28
SMAD3-215ENST00000560424 CD2APQ9Y5K6 639 aa13.29□□□□□ -0.28
SMAD3-215ENST00000560424 HMGB2P26583 209 aaKnown RBP13.28□□□□□ -0.28
SMAD3-215ENST00000560424 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
SMAD3-215ENST00000560424 ADCY9O60503 1353 aa13.28□□□□□ -0.28
SMAD3-215ENST00000560424 COL23A1Q86Y22 540 aaPredicted RBP13.27□□□□□ -0.29
SMAD3-215ENST00000560424 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.27□□□□□ -0.29
SMAD3-215ENST00000560424 LTN1O94822 1766 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms