RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PHF23Q9BUL5 403 aaPredicted RBP29.73■■■□□ 2.35
SNX1-210ENST00000560260 AXIN2Q9Y2T1 843 aa29.73■■■□□ 2.35
SNX1-210ENST00000560260 USP21Q9UK80 565 aa29.72■■■□□ 2.35
SNX1-210ENST00000560260 MAP2P11137 1827 aaKnown RBP29.72■■■□□ 2.35
SNX1-210ENST00000560260 COL5A2P05997 1499 aaPredicted RBP29.72■■■□□ 2.35
SNX1-210ENST00000560260 EMILIN1Q9Y6C2 1016 aa29.71■■■□□ 2.35
SNX1-210ENST00000560260 ATRNO75882 1429 aa29.7■■■□□ 2.34
SNX1-210ENST00000560260 SMG6Q86US8 1419 aaKnown RBP29.69■■■□□ 2.34
SNX1-210ENST00000560260 RTL1A6NKG5 1358 aa29.69■■■□□ 2.34
SNX1-210ENST00000560260 UNC5CLQ8IV45 518 aa29.69■■■□□ 2.34
SNX1-210ENST00000560260 POLKQ9UBT6 870 aa29.68■■■□□ 2.34
SNX1-210ENST00000560260 HOXC9P31274 260 aa29.67■■■□□ 2.34
SNX1-210ENST00000560260 POTEAQ6S8J7 498 aa29.66■■■□□ 2.34
SNX1-210ENST00000560260 IP6K1Q92551 441 aa29.66■■■□□ 2.34
SNX1-210ENST00000560260 ZNF772Q68DY9 489 aaPredicted RBP29.65■■■□□ 2.34
SNX1-210ENST00000560260 BLMP54132 1417 aaPredicted RBP29.64■■■□□ 2.34
SNX1-210ENST00000560260 FLT4P35916 1363 aa29.64■■■□□ 2.34
SNX1-210ENST00000560260 PARD3Q8TEW0 1356 aa29.64■■■□□ 2.34
SNX1-210ENST00000560260 AMPHP49418 695 aa29.64■■■□□ 2.34
SNX1-210ENST00000560260 KIF24Q5T7B8 1368 aa29.63■■■□□ 2.33
SNX1-210ENST00000560260 GLI3P10071 1580 aa29.63■■■□□ 2.33
SNX1-210ENST00000560260 STRN4Q9NRL3 753 aa29.63■■■□□ 2.33
SNX1-210ENST00000560260 ERBB3P21860 1342 aa29.6■■■□□ 2.33
SNX1-210ENST00000560260 VPS72Q15906 364 aa29.6■■■□□ 2.33
SNX1-210ENST00000560260 LARP1Q6PKG0 1096 aaKnown RBP29.6■■■□□ 2.33
SNX1-210ENST00000560260 TRPC5Q9UL62 973 aaPredicted RBP29.6■■■□□ 2.33
SNX1-210ENST00000560260 CDK12Q9NYV4 1490 aaPredicted RBP29.6■■■□□ 2.33
SNX1-210ENST00000560260 PPM1GO15355 546 aaPredicted RBP29.59■■■□□ 2.33
SNX1-210ENST00000560260 HSP90AB2PQ58FF8 381 aa29.59■■■□□ 2.33
SNX1-210ENST00000560260 QTRT2Q9H974 415 aaKnown RBP29.59■■■□□ 2.33
SNX1-210ENST00000560260 INSRP06213 1382 aa29.58■■■□□ 2.33
SNX1-210ENST00000560260 WDR17Q8IZU2 1322 aa29.57■■■□□ 2.33
SNX1-210ENST00000560260 ANKRD24Q8TF21 1146 aa29.57■■■□□ 2.32
SNX1-210ENST00000560260 SPATA31A5Q5VU36 1347 aa29.56■■■□□ 2.32
SNX1-210ENST00000560260 SPATA31A7Q8IWB4 1347 aa29.56■■■□□ 2.32
SNX1-210ENST00000560260 RGPD2P0DJD1 1756 aa29.56■■■□□ 2.32
SNX1-210ENST00000560260 FAM208AQ9UK61 1670 aaKnown RBP29.56■■■□□ 2.32
SNX1-210ENST00000560260 EVA1CP58658 441 aa29.55■■■□□ 2.32
SNX1-210ENST00000560260 LTV1Q96GA3 475 aaPredicted RBP29.55■■■□□ 2.32
SNX1-210ENST00000560260 CRB1P82279 1406 aa29.55■■■□□ 2.32
SNX1-210ENST00000560260 PPP2R1AP30153 589 aa29.54■■■□□ 2.32
SNX1-210ENST00000560260 MTHFSP49914 203 aa29.53■■■□□ 2.32
SNX1-210ENST00000560260 SPATA31A1Q5TZJ5 1347 aa29.53■■■□□ 2.32
SNX1-210ENST00000560260 GJD4Q96KN9 370 aaPredicted RBP29.52■■■□□ 2.32
SNX1-210ENST00000560260 CCDC9Q9Y3X0 531 aaKnown RBP29.52■■■□□ 2.32
SNX1-210ENST00000560260 COL3A1P02461 1466 aaPredicted RBP29.52■■■□□ 2.32
SNX1-210ENST00000560260 CSB-PGBD3P0DP91 1061 aa29.51■■■□□ 2.32
SNX1-210ENST00000560260 WNK3Q9BYP7 1800 aa29.5■■■□□ 2.31
SNX1-210ENST00000560260 RBM6P78332 1123 aaKnown RBP29.49■■■□□ 2.31
SNX1-210ENST00000560260 TOM1L2Q6ZVM7 507 aa29.48■■■□□ 2.31
SNX1-210ENST00000560260 PRKRIP1Q9H875 184 aaPredicted RBP29.48■■■□□ 2.31
SNX1-210ENST00000560260 EIF4A2Q14240 407 aaKnown RBP29.47■■■□□ 2.31
SNX1-210ENST00000560260 RALBP1Q15311 655 aa29.47■■■□□ 2.31
SNX1-210ENST00000560260 USP35Q9P2H5 1018 aa29.47■■■□□ 2.31
SNX1-210ENST00000560260 THSD7AQ9UPZ6 1657 aa29.47■■■□□ 2.31
SNX1-210ENST00000560260 RGS12O14924 1447 aa29.46■■■□□ 2.31
SNX1-210ENST00000560260 RXRBP28702 533 aa29.45■■■□□ 2.31
SNX1-210ENST00000560260 CARD10Q9BWT7 1032 aa29.45■■■□□ 2.31
SNX1-210ENST00000560260 NLRP2Q9NX02 1062 aa29.45■■■□□ 2.31
SNX1-210ENST00000560260 NBPF6Q5VWK0 638 aa29.44■■■□□ 2.3
SNX1-210ENST00000560260 NBPF4Q96M43 638 aa29.44■■■□□ 2.3
SNX1-210ENST00000560260 RGPD1P0DJD0 1748 aa29.43■■■□□ 2.3
SNX1-210ENST00000560260 NCAPD2Q15021 1401 aa29.43■■■□□ 2.3
SNX1-210ENST00000560260 TCP11L2Q8N4U5 519 aa29.43■■■□□ 2.3
SNX1-210ENST00000560260 DISP2A7MBM2 1401 aa29.42■■■□□ 2.3
SNX1-210ENST00000560260 FAM98CQ17RN3 349 aaKnown RBP29.42■■■□□ 2.3
SNX1-210ENST00000560260 USHBP1Q8N6Y0 703 aa29.42■■■□□ 2.3
SNX1-210ENST00000560260 MYBBP1AQ9BQG0 1328 aaKnown RBP29.41■■■□□ 2.3
SNX1-210ENST00000560260 IL13P35225 146 aa29.4■■■□□ 2.3
SNX1-210ENST00000560260 BARGINQ6ZT62 677 aa29.39■■■□□ 2.3
SNX1-210ENST00000560260 EYA1Q99502 592 aa29.39■■■□□ 2.3
SNX1-210ENST00000560260 ONECUT3O60422 494 aaPredicted RBP29.38■■■□□ 2.29
SNX1-210ENST00000560260 THRAP3Q9Y2W1 955 aaKnown RBP29.38■■■□□ 2.29
SNX1-210ENST00000560260 LRRC37A3O60309 1634 aa29.38■■■□□ 2.29
SNX1-210ENST00000560260 PARP4Q9UKK3 1724 aaKnown RBP29.37■■■□□ 2.29
SNX1-210ENST00000560260 IGSF1Q8N6C5 1336 aa29.36■■■□□ 2.29
SNX1-210ENST00000560260 BRWD3Q6RI45 1802 aa29.36■■■□□ 2.29
SNX1-210ENST00000560260 MEGF6O75095 1541 aa29.36■■■□□ 2.29
SNX1-210ENST00000560260 DIAPH1O60610 1272 aaKnown RBP29.34■■■□□ 2.29
SNX1-210ENST00000560260 ILDR2Q71H61 639 aa29.34■■■□□ 2.29
SNX1-210ENST00000560260 SEPT12Q8IYM1 358 aa29.34■■■□□ 2.29
SNX1-210ENST00000560260 ANP32CO43423 234 aa29.32■■■□□ 2.28
SNX1-210ENST00000560260 CFAP53Q96M91 514 aa29.32■■■□□ 2.28
SNX1-210ENST00000560260 AEBP1Q8IUX7 1158 aa29.29■■■□□ 2.28
SNX1-210ENST00000560260 A0A0G2JS52 829 aa29.28■■■□□ 2.28
SNX1-210ENST00000560260 IL2RBP14784 551 aa29.28■■■□□ 2.28
SNX1-210ENST00000560260 MYT1Q01538 1121 aa29.28■■■□□ 2.28
SNX1-210ENST00000560260 SHANK3Q9BYB0 1731 aa29.27■■■□□ 2.28
SNX1-210ENST00000560260 OVOS2A0A0G2JMS6 1433 aa29.27■■■□□ 2.28
SNX1-210ENST00000560260 TNS2Q63HR2 1409 aa29.27■■■□□ 2.28
SNX1-210ENST00000560260 KDRP35968 1356 aa29.27■■■□□ 2.28
SNX1-210ENST00000560260 CCDC184Q52MB2 194 aa29.24■■■□□ 2.27
SNX1-210ENST00000560260 CDCA7Q9BWT1 371 aaPredicted RBP29.24■■■□□ 2.27
SNX1-210ENST00000560260 PKD1L3Q7Z443 1732 aa29.24■■■□□ 2.27
SNX1-210ENST00000560260 SULT6B1Q6IMI4 303 aa29.23■■■□□ 2.27
SNX1-210ENST00000560260 U2SURPO15042 1029 aaKnown RBP29.22■■■□□ 2.27
SNX1-210ENST00000560260 HMOX1P09601 288 aa29.21■■■□□ 2.27
SNX1-210ENST00000560260 DIEXFQ68CQ4 756 aaKnown RBP29.21■■■□□ 2.27
SNX1-210ENST00000560260 RAPGEF4Q8WZA2 1011 aa29.2■■■□□ 2.27
SNX1-210ENST00000560260 DDB1Q16531 1140 aa29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms