RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 IP6K1Q92551 441 aa16.38■□□□□ 0.21
RABGGTA-215ENST00000560207 QTRT2Q9H974 415 aaKnown RBP16.38■□□□□ 0.21
RABGGTA-215ENST00000560207 CAMTA1Q9Y6Y1 1673 aa16.37■□□□□ 0.21
RABGGTA-215ENST00000560207 RBM6P78332 1123 aaKnown RBP16.37■□□□□ 0.21
RABGGTA-215ENST00000560207 FLT4P35916 1363 aa16.37■□□□□ 0.21
RABGGTA-215ENST00000560207 ATRNO75882 1429 aa16.36■□□□□ 0.21
RABGGTA-215ENST00000560207 SOX12O15370 315 aa16.36■□□□□ 0.21
RABGGTA-215ENST00000560207 CHRNA2Q15822 529 aa16.36■□□□□ 0.21
RABGGTA-215ENST00000560207 MAP3K19Q56UN5 1328 aa16.36■□□□□ 0.21
RABGGTA-215ENST00000560207 SMG6Q86US8 1419 aaKnown RBP16.36■□□□□ 0.21
RABGGTA-215ENST00000560207 COL5A2P05997 1499 aaPredicted RBP16.35■□□□□ 0.21
RABGGTA-215ENST00000560207 CDK12Q9NYV4 1490 aaPredicted RBP16.35■□□□□ 0.21
RABGGTA-215ENST00000560207 RXRBP28702 533 aa16.35■□□□□ 0.21
RABGGTA-215ENST00000560207 DDX10Q13206 875 aaKnown RBP16.35■□□□□ 0.21
RABGGTA-215ENST00000560207 ILDR2Q71H61 639 aa16.35■□□□□ 0.21
RABGGTA-215ENST00000560207 THRAP3Q9Y2W1 955 aaKnown RBP16.35■□□□□ 0.21
RABGGTA-215ENST00000560207 ZBTB7CA1YPR0 619 aa16.34■□□□□ 0.21
RABGGTA-215ENST00000560207 GJD4Q96KN9 370 aaPredicted RBP16.34■□□□□ 0.21
RABGGTA-215ENST00000560207 RGS17Q9UGC6 210 aaPredicted RBP16.34■□□□□ 0.21
RABGGTA-215ENST00000560207 WDR17Q8IZU2 1322 aa16.34■□□□□ 0.21
RABGGTA-215ENST00000560207 INSRP06213 1382 aa16.34■□□□□ 0.21
RABGGTA-215ENST00000560207 CRB1P82279 1406 aa16.34■□□□□ 0.21
RABGGTA-215ENST00000560207 HOXC9P31274 260 aa16.33■□□□□ 0.2
RABGGTA-215ENST00000560207 RALBP1Q15311 655 aa16.32■□□□□ 0.2
RABGGTA-215ENST00000560207 CC2D1BQ5T0F9 858 aaKnown RBP16.32■□□□□ 0.2
RABGGTA-215ENST00000560207 CDCA7Q9BWT1 371 aaPredicted RBP16.32■□□□□ 0.2
RABGGTA-215ENST00000560207 CCDC9Q9Y3X0 531 aaKnown RBP16.32■□□□□ 0.2
RABGGTA-215ENST00000560207 ERBB3P21860 1342 aa16.31■□□□□ 0.2
RABGGTA-215ENST00000560207 SPATA31A5Q5VU36 1347 aa16.31■□□□□ 0.2
RABGGTA-215ENST00000560207 SPATA31A7Q8IWB4 1347 aa16.31■□□□□ 0.2
RABGGTA-215ENST00000560207 CSB-PGBD3P0DP91 1061 aa16.31■□□□□ 0.2
RABGGTA-215ENST00000560207 STRN4Q9NRL3 753 aa16.31■□□□□ 0.2
RABGGTA-215ENST00000560207 POLKQ9UBT6 870 aa16.31■□□□□ 0.2
RABGGTA-215ENST00000560207 RRS1Q15050 365 aaKnown RBP16.3■□□□□ 0.2
RABGGTA-215ENST00000560207 TOM1L2Q6ZVM7 507 aa16.3■□□□□ 0.2
RABGGTA-215ENST00000560207 CARD10Q9BWT7 1032 aa16.3■□□□□ 0.2
RABGGTA-215ENST00000560207 AXIN2Q9Y2T1 843 aa16.3■□□□□ 0.2
RABGGTA-215ENST00000560207 SPATA31A1Q5TZJ5 1347 aa16.29■□□□□ 0.2
RABGGTA-215ENST00000560207 PEAK1Q9H792 1746 aa16.29■□□□□ 0.2
RABGGTA-215ENST00000560207 ONECUT3O60422 494 aaPredicted RBP16.29■□□□□ 0.2
RABGGTA-215ENST00000560207 POTEAQ6S8J7 498 aa16.29■□□□□ 0.2
RABGGTA-215ENST00000560207 BARGINQ6ZT62 677 aa16.29■□□□□ 0.2
RABGGTA-215ENST00000560207 ANKRD24Q8TF21 1146 aa16.29■□□□□ 0.2
RABGGTA-215ENST00000560207 TCP11L2Q8N4U5 519 aa16.28■□□□□ 0.2
RABGGTA-215ENST00000560207 GLI3P10071 1580 aa16.28■□□□□ 0.2
RABGGTA-215ENST00000560207 PARD3Q8TEW0 1356 aa16.27■□□□□ 0.2
RABGGTA-215ENST00000560207 WNK3Q9BYP7 1800 aa16.27■□□□□ 0.2
RABGGTA-215ENST00000560207 PPM1GO15355 546 aaPredicted RBP16.27■□□□□ 0.2
RABGGTA-215ENST00000560207 TNNT2P45379 298 aaPredicted RBP16.27■□□□□ 0.2
RABGGTA-215ENST00000560207 CFAP53Q96M91 514 aa16.27■□□□□ 0.2
RABGGTA-215ENST00000560207 EMILIN1Q9Y6C2 1016 aa16.27■□□□□ 0.2
RABGGTA-215ENST00000560207 PLEKHG2Q9H7P9 1386 aa16.26■□□□□ 0.19
RABGGTA-215ENST00000560207 LARP1Q6PKG0 1096 aaKnown RBP16.26■□□□□ 0.19
RABGGTA-215ENST00000560207 PARP4Q9UKK3 1724 aaKnown RBP16.25■□□□□ 0.19
RABGGTA-215ENST00000560207 SOCS7O14512 581 aa16.25■□□□□ 0.19
RABGGTA-215ENST00000560207 HSP90AB2PQ58FF8 381 aa16.25■□□□□ 0.19
RABGGTA-215ENST00000560207 FBLN1P23142 703 aa16.24■□□□□ 0.19
RABGGTA-215ENST00000560207 MTHFSP49914 203 aa16.24■□□□□ 0.19
RABGGTA-215ENST00000560207 NLRP2Q9NX02 1062 aa16.24■□□□□ 0.19
RABGGTA-215ENST00000560207 RGPD2P0DJD1 1756 aa16.23■□□□□ 0.19
RABGGTA-215ENST00000560207 THSD7AQ9UPZ6 1657 aa16.23■□□□□ 0.19
RABGGTA-215ENST00000560207 PPP2R1AP30153 589 aa16.22■□□□□ 0.19
RABGGTA-215ENST00000560207 NUDCQ9Y266 331 aa16.21■□□□□ 0.19
RABGGTA-215ENST00000560207 MYBBP1AQ9BQG0 1328 aaKnown RBP16.2■□□□□ 0.18
RABGGTA-215ENST00000560207 DIAPH1O60610 1272 aaKnown RBP16.2■□□□□ 0.18
RABGGTA-215ENST00000560207 IL2RBP14784 551 aa16.2■□□□□ 0.18
RABGGTA-215ENST00000560207 FAM98CQ17RN3 349 aaKnown RBP16.2■□□□□ 0.18
RABGGTA-215ENST00000560207 LTV1Q96GA3 475 aaPredicted RBP16.2■□□□□ 0.18
RABGGTA-215ENST00000560207 USP35Q9P2H5 1018 aa16.2■□□□□ 0.18
RABGGTA-215ENST00000560207 NCAPD2Q15021 1401 aa16.19■□□□□ 0.18
RABGGTA-215ENST00000560207 BRWD3Q6RI45 1802 aa16.19■□□□□ 0.18
RABGGTA-215ENST00000560207 ANP32CO43423 234 aa16.19■□□□□ 0.18
RABGGTA-215ENST00000560207 EIF4A2Q14240 407 aaKnown RBP16.19■□□□□ 0.18
RABGGTA-215ENST00000560207 SEPT12Q8IYM1 358 aa16.19■□□□□ 0.18
RABGGTA-215ENST00000560207 PRKRIP1Q9H875 184 aaPredicted RBP16.19■□□□□ 0.18
RABGGTA-215ENST00000560207 A0A0G2JS52 829 aa16.18■□□□□ 0.18
RABGGTA-215ENST00000560207 MYT1Q01538 1121 aa16.18■□□□□ 0.18
RABGGTA-215ENST00000560207 RAPGEF4Q8WZA2 1011 aa16.18■□□□□ 0.18
RABGGTA-215ENST00000560207 RGPD1P0DJD0 1748 aa16.18■□□□□ 0.18
RABGGTA-215ENST00000560207 RGS12O14924 1447 aa16.18■□□□□ 0.18
RABGGTA-215ENST00000560207 EXOC5O00471 708 aa16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 PDE3BQ13370 1112 aa16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 CNGB1Q14028 1251 aaPredicted RBP16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 NBPF6Q5VWK0 638 aa16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 NBPF4Q96M43 638 aa16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 DISP2A7MBM2 1401 aa16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 IGSF1Q8N6C5 1336 aa16.17■□□□□ 0.18
RABGGTA-215ENST00000560207 DDB1Q16531 1140 aa16.16■□□□□ 0.18
RABGGTA-215ENST00000560207 EYA1Q99502 592 aa16.16■□□□□ 0.18
RABGGTA-215ENST00000560207 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.16■□□□□ 0.182e-8■□□□□ 10.7
RABGGTA-215ENST00000560207 TATP17735 454 aaPredicted RBP16.15■□□□□ 0.18
RABGGTA-215ENST00000560207 IL13P35225 146 aa16.15■□□□□ 0.18
RABGGTA-215ENST00000560207 KRT27Q7Z3Y8 459 aa16.15■□□□□ 0.18
RABGGTA-215ENST00000560207 LRRC37A3O60309 1634 aa16.15■□□□□ 0.18
RABGGTA-215ENST00000560207 PNNQ9H307 717 aaKnown RBP16.14■□□□□ 0.17
RABGGTA-215ENST00000560207 COL3A1P02461 1466 aaPredicted RBP16.14■□□□□ 0.17
RABGGTA-215ENST00000560207 KDRP35968 1356 aa16.13■□□□□ 0.17
RABGGTA-215ENST00000560207 OVOS2A0A0G2JMS6 1433 aa16.13■□□□□ 0.17
RABGGTA-215ENST00000560207 TNS2Q63HR2 1409 aa16.13■□□□□ 0.17
RABGGTA-215ENST00000560207 PKD1L3Q7Z443 1732 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms