RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
USP3-217ENST00000560070 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
USP3-217ENST00000560070 ITSN1Q15811 1721 aa11.73□□□□□ -0.53
USP3-217ENST00000560070 MAP3K19Q56UN5 1328 aa11.73□□□□□ -0.53
USP3-217ENST00000560070 FAM182BQ5T319 152 aa11.73□□□□□ -0.53
USP3-217ENST00000560070 AATKQ6ZMQ8 1374 aa11.73□□□□□ -0.53
USP3-217ENST00000560070 MORC1Q86VD1 984 aa11.73□□□□□ -0.53
USP3-217ENST00000560070 ANKRD24Q8TF21 1146 aa11.73□□□□□ -0.53
USP3-217ENST00000560070 CCDC7Q96M83 1385 aa11.72□□□□□ -0.53
USP3-217ENST00000560070 SPATA31A1Q5TZJ5 1347 aa11.72□□□□□ -0.53
USP3-217ENST00000560070 TCP11L2Q8N4U5 519 aa11.72□□□□□ -0.53
USP3-217ENST00000560070 IP6K1Q92551 441 aa11.72□□□□□ -0.53
USP3-217ENST00000560070 ALS2Q96Q42 1657 aa11.71□□□□□ -0.53
USP3-217ENST00000560070 ONECUT3O60422 494 aaPredicted RBP11.71□□□□□ -0.53
USP3-217ENST00000560070 CC2D1BQ5T0F9 858 aaKnown RBP11.71□□□□□ -0.53
USP3-217ENST00000560070 EMILIN1Q9Y6C2 1016 aa11.71□□□□□ -0.53
USP3-217ENST00000560070 RGS12O14924 1447 aa11.7□□□□□ -0.54
USP3-217ENST00000560070 HOXC9P31274 260 aa11.7□□□□□ -0.54
USP3-217ENST00000560070 OVOS2A0A0J9YW53 1432 aa11.69□□□□□ -0.54
USP3-217ENST00000560070 OVOS2Q6IE36 1432 aa11.69□□□□□ -0.54
USP3-217ENST00000560070 CAMTA1Q9Y6Y1 1673 aa11.69□□□□□ -0.54
USP3-217ENST00000560070 HSP90AB2PQ58FF8 381 aa11.69□□□□□ -0.54
USP3-217ENST00000560070 KRT27Q7Z3Y8 459 aa11.69□□□□□ -0.54
USP3-217ENST00000560070 WDR17Q8IZU2 1322 aa11.68□□□□□ -0.54
USP3-217ENST00000560070 PER1O15534 1290 aaPredicted RBP11.68□□□□□ -0.54
USP3-217ENST00000560070 PDE3BQ13370 1112 aa11.68□□□□□ -0.54
USP3-217ENST00000560070 USHBP1Q8N6Y0 703 aa11.68□□□□□ -0.54
USP3-217ENST00000560070 UPF1Q92900 1129 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP3-217ENST00000560070 CARD10Q9BWT7 1032 aa11.68□□□□□ -0.54
USP3-217ENST00000560070 POLKQ9UBT6 870 aa11.68□□□□□ -0.54
USP3-217ENST00000560070 SLIT3O75094 1523 aa11.68□□□□□ -0.54
USP3-217ENST00000560070 DDX10Q13206 875 aaKnown RBP11.67□□□□□ -0.54
USP3-217ENST00000560070 AMER1Q5JTC6 1135 aaPredicted RBP11.67□□□□□ -0.54
USP3-217ENST00000560070 PIK3C2AO00443 1686 aa11.67□□□□□ -0.54
USP3-217ENST00000560070 BARGINQ6ZT62 677 aa11.66□□□□□ -0.54
USP3-217ENST00000560070 THRAP3Q9Y2W1 955 aaKnown RBP11.66□□□□□ -0.54
USP3-217ENST00000560070 NRKQ7Z2Y5 1582 aa11.66□□□□□ -0.54
USP3-217ENST00000560070 ERBB3P21860 1342 aa11.65□□□□□ -0.54
USP3-217ENST00000560070 COL5A2P05997 1499 aaPredicted RBP11.65□□□□□ -0.54
USP3-217ENST00000560070 EXOC5O00471 708 aa11.65□□□□□ -0.54
USP3-217ENST00000560070 NBPF6Q5VWK0 638 aa11.65□□□□□ -0.54
USP3-217ENST00000560070 NBPF4Q96M43 638 aa11.65□□□□□ -0.54
USP3-217ENST00000560070 CRB1P82279 1406 aa11.65□□□□□ -0.54
USP3-217ENST00000560070 DDB1Q16531 1140 aa11.64□□□□□ -0.55
USP3-217ENST00000560070 NFAT5O94916 1531 aa11.64□□□□□ -0.55
USP3-217ENST00000560070 COL14A1Q05707 1796 aaKnown RBP11.64□□□□□ -0.55
USP3-217ENST00000560070 CDK12Q9NYV4 1490 aaPredicted RBP11.63□□□□□ -0.55
USP3-217ENST00000560070 DDX54Q8TDD1 881 aaKnown RBP11.63□□□□□ -0.55
USP3-217ENST00000560070 PHRF1Q9P1Y6 1649 aaKnown RBP11.63□□□□□ -0.55
USP3-217ENST00000560070 GLI3P10071 1580 aa11.62□□□□□ -0.55
USP3-217ENST00000560070 AKAP12Q02952 1782 aa11.62□□□□□ -0.55
USP3-217ENST00000560070 IL2RBP14784 551 aa11.62□□□□□ -0.55
USP3-217ENST00000560070 MTHFSP49914 203 aa11.62□□□□□ -0.55
USP3-217ENST00000560070 TRIM37O94972 964 aa11.61□□□□□ -0.55
USP3-217ENST00000560070 SF3B2Q13435 895 aaKnown RBP11.61□□□□□ -0.55
USP3-217ENST00000560070 EIF4A2Q14240 407 aaKnown RBP11.61□□□□□ -0.55
USP3-217ENST00000560070 MARCH10Q8NA82 808 aaPredicted RBP11.61□□□□□ -0.55
USP3-217ENST00000560070 MON2Q7Z3U7 1717 aa11.6□□□□□ -0.55
USP3-217ENST00000560070 ABCA3Q99758 1704 aa11.6□□□□□ -0.55
USP3-217ENST00000560070 INSRP06213 1382 aa11.6□□□□□ -0.55
USP3-217ENST00000560070 FLT4P35916 1363 aa11.6□□□□□ -0.55
USP3-217ENST00000560070 EYA1Q99502 592 aa11.6□□□□□ -0.55
USP3-217ENST00000560070 CDCA7Q9BWT1 371 aaPredicted RBP11.6□□□□□ -0.55
USP3-217ENST00000560070 TATP17735 454 aaPredicted RBP11.59□□□□□ -0.55
USP3-217ENST00000560070 FAM196AQ6ZSG2 479 aa11.59□□□□□ -0.55
USP3-217ENST00000560070 DEFB132Q7Z7B7 95 aa11.59□□□□□ -0.55
USP3-217ENST00000560070 RAPGEF4Q8WZA2 1011 aa11.59□□□□□ -0.55
USP3-217ENST00000560070 ACSBG1Q96GR2 724 aa11.59□□□□□ -0.55
USP3-217ENST00000560070 BLMP54132 1417 aaPredicted RBP11.59□□□□□ -0.55
USP3-217ENST00000560070 PLCH1Q4KWH8 1693 aa11.59□□□□□ -0.55
USP3-217ENST00000560070 CRYBG1Q9Y4K1 1723 aa11.58□□□□□ -0.56
USP3-217ENST00000560070 NSD2O96028 1365 aa11.58□□□□□ -0.56
USP3-217ENST00000560070 ZNF316A6NFI3 1004 aaPredicted RBP11.58□□□□□ -0.56
USP3-217ENST00000560070 ZCRB1Q8TBF4 217 aaKnown RBP11.58□□□□□ -0.56
USP3-217ENST00000560070 MYOM1P52179 1685 aa11.58□□□□□ -0.56
USP3-217ENST00000560070 RTL1A6NKG5 1358 aa11.57□□□□□ -0.56
USP3-217ENST00000560070 APBA3O96018 575 aa11.57□□□□□ -0.56
USP3-217ENST00000560070 PTF1AQ7RTS3 328 aa11.57□□□□□ -0.56
USP3-217ENST00000560070 SMG6Q86US8 1419 aaKnown RBP11.57□□□□□ -0.56
USP3-217ENST00000560070 LMO7Q8WWI1 1683 aa11.56□□□□□ -0.56
USP3-217ENST00000560070 EN1Q05925 392 aaPredicted RBP11.56□□□□□ -0.56
USP3-217ENST00000560070 CCDC125Q86Z20 511 aa11.56□□□□□ -0.56
USP3-217ENST00000560070 MARF1Q9Y4F3 1742 aaKnown RBP11.56□□□□□ -0.56
USP3-217ENST00000560070 U2SURPO15042 1029 aaKnown RBP11.55□□□□□ -0.56
USP3-217ENST00000560070 KCNQ2O43526 872 aa11.55□□□□□ -0.56
USP3-217ENST00000560070 PPP2R1AP30153 589 aa11.55□□□□□ -0.56
USP3-217ENST00000560070 IL13P35225 146 aa11.55□□□□□ -0.56
USP3-217ENST00000560070 RNF216Q9NWF9 866 aaPredicted RBP11.55□□□□□ -0.56
USP3-217ENST00000560070 NRAPQ86VF7 1730 aa11.55□□□□□ -0.56
USP3-217ENST00000560070 NWD2Q9ULI1 1742 aa11.55□□□□□ -0.56
USP3-217ENST00000560070 KIF24Q5T7B8 1368 aa11.54□□□□□ -0.56
USP3-217ENST00000560070 DIAPH1O60610 1272 aaKnown RBP11.54□□□□□ -0.56
USP3-217ENST00000560070 HMOX1P09601 288 aa11.54□□□□□ -0.56
USP3-217ENST00000560070 SULT6B1Q6IMI4 303 aa11.54□□□□□ -0.56
USP3-217ENST00000560070 AEBP1Q8IUX7 1158 aa11.54□□□□□ -0.56
USP3-217ENST00000560070 COL18A1P39060 1754 aa11.54□□□□□ -0.56
USP3-217ENST00000560070 BAG6P46379 1132 aa11.53□□□□□ -0.56
USP3-217ENST00000560070 EZH2Q15910 746 aaKnown RBP11.53□□□□□ -0.56
USP3-217ENST00000560070 SYTL4Q96C24 671 aaPredicted RBP11.53□□□□□ -0.56
USP3-217ENST00000560070 DISP2A7MBM2 1401 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms