RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 ROCK2O75116 1388 aaKnown RBP18.84■□□□□ 0.61
TPM1-220ENST00000559556 APBA3O96018 575 aa18.84■□□□□ 0.61
TPM1-220ENST00000559556 NLRP6P59044 892 aa18.84■□□□□ 0.61
TPM1-220ENST00000559556 FAM208AQ9UK61 1670 aaKnown RBP18.82■□□□□ 0.6
TPM1-220ENST00000559556 NHSQ6T4R5 1651 aa18.82■□□□□ 0.6
TPM1-220ENST00000559556 SBNO2Q9Y2G9 1366 aa18.81■□□□□ 0.6
TPM1-220ENST00000559556 C11orf95C9JLR9 678 aaPredicted RBP18.8■□□□□ 0.6
TPM1-220ENST00000559556 SIN3AQ96ST3 1273 aa18.8■□□□□ 0.6
TPM1-220ENST00000559556 BTAF1O14981 1849 aa18.79■□□□□ 0.6
TPM1-220ENST00000559556 TTC21BQ7Z4L5 1316 aa18.78■□□□□ 0.6
TPM1-220ENST00000559556 WDR17Q8IZU2 1322 aa18.78■□□□□ 0.6
TPM1-220ENST00000559556 TTC21AQ8NDW8 1320 aa18.78■□□□□ 0.6
TPM1-220ENST00000559556 ZNF692Q9BU19 519 aaPredicted RBP18.78■□□□□ 0.6
TPM1-220ENST00000559556 RGPD2P0DJD1 1756 aa18.78■□□□□ 0.6
TPM1-220ENST00000559556 ZBTB7CA1YPR0 619 aa18.77■□□□□ 0.6
TPM1-220ENST00000559556 BCL9O00512 1426 aa18.76■□□□□ 0.59
TPM1-220ENST00000559556 ARHGEF25Q86VW2 580 aa18.76■□□□□ 0.59
TPM1-220ENST00000559556 KTN1Q86UP2 1357 aaKnown RBP18.76■□□□□ 0.59
TPM1-220ENST00000559556 CD163L1Q9NR16 1453 aa18.76■□□□□ 0.59
TPM1-220ENST00000559556 TOM1L2Q6ZVM7 507 aa18.75■□□□□ 0.59
TPM1-220ENST00000559556 KCNH5Q8NCM2 988 aa18.75■□□□□ 0.59
TPM1-220ENST00000559556 AXIN2Q9Y2T1 843 aa18.75■□□□□ 0.59
TPM1-220ENST00000559556 CHD4Q14839 1912 aa18.74■□□□□ 0.59
TPM1-220ENST00000559556 DDB1Q16531 1140 aa18.74■□□□□ 0.59
TPM1-220ENST00000559556 NEUROD1Q13562 356 aa18.73■□□□□ 0.59
TPM1-220ENST00000559556 QSER1Q2KHR3 1735 aa18.73■□□□□ 0.59
TPM1-220ENST00000559556 TNS2Q63HR2 1409 aa18.73■□□□□ 0.59
TPM1-220ENST00000559556 NBPF14Q5TI25 921 aa18.72■□□□□ 0.59
TPM1-220ENST00000559556 CDCA7Q9BWT1 371 aaPredicted RBP18.72■□□□□ 0.59
TPM1-220ENST00000559556 MYOM1P52179 1685 aa18.72■□□□□ 0.59
TPM1-220ENST00000559556 SHANK3Q9BYB0 1731 aa18.71■□□□□ 0.59
TPM1-220ENST00000559556 USP31Q70CQ4 1352 aa18.71■□□□□ 0.59
TPM1-220ENST00000559556 PLSCR1O15162 318 aa18.71■□□□□ 0.59
TPM1-220ENST00000559556 TUBGCP6Q96RT7 1819 aa18.71■□□□□ 0.59
TPM1-220ENST00000559556 CCDC7Q96M83 1385 aa18.7■□□□□ 0.58
TPM1-220ENST00000559556 CARD10Q9BWT7 1032 aa18.7■□□□□ 0.58
TPM1-220ENST00000559556 UTRNP46939 3433 aa18.7■□□□□ 0.58
TPM1-220ENST00000559556 PAPPAQ13219 1627 aa18.7■□□□□ 0.58
TPM1-220ENST00000559556 KIF20BQ96Q89 1820 aa18.7■□□□□ 0.58
TPM1-220ENST00000559556 MARCH10Q8NA82 808 aaPredicted RBP18.68■□□□□ 0.58
TPM1-220ENST00000559556 BCL11BQ9C0K0 894 aaPredicted RBP18.68■□□□□ 0.58
TPM1-220ENST00000559556 EDC4Q6P2E9 1401 aaKnown RBP18.67■□□□□ 0.58
TPM1-220ENST00000559556 SOX12O15370 315 aa18.67■□□□□ 0.58
TPM1-220ENST00000559556 DOT1LQ8TEK3 1739 aa18.66■□□□□ 0.58
TPM1-220ENST00000559556 PTF1AQ7RTS3 328 aa18.65■□□□□ 0.58
TPM1-220ENST00000559556 LY75O60449 1722 aa18.65■□□□□ 0.58
TPM1-220ENST00000559556 COL24A1Q17RW2 1714 aa18.65■□□□□ 0.58
TPM1-220ENST00000559556 CSB-PGBD3P0DP91 1061 aa18.64■□□□□ 0.57
TPM1-220ENST00000559556 CARD11Q9BXL7 1154 aa18.64■□□□□ 0.57
TPM1-220ENST00000559556 SPON1Q9HCB6 807 aa18.64■□□□□ 0.57
TPM1-220ENST00000559556 ANO8Q9HCE9 1232 aaPredicted RBP18.64■□□□□ 0.57
TPM1-220ENST00000559556 ERBB3P21860 1342 aa18.64■□□□□ 0.57
TPM1-220ENST00000559556 NINLQ9Y2I6 1382 aa18.64■□□□□ 0.57
TPM1-220ENST00000559556 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.63■□□□□ 0.57
TPM1-220ENST00000559556 A0A1W2PP64 1363 aa18.63■□□□□ 0.57
TPM1-220ENST00000559556 KCNQ2O43526 872 aa18.62■□□□□ 0.57
TPM1-220ENST00000559556 TONSLQ96HA7 1378 aa18.62■□□□□ 0.57
TPM1-220ENST00000559556 NME9Q86XW9 330 aa18.61■□□□□ 0.57
TPM1-220ENST00000559556 EXOC5O00471 708 aa18.6■□□□□ 0.57
TPM1-220ENST00000559556 HDGFL2Q7Z4V5 671 aaPredicted RBP18.6■□□□□ 0.57
TPM1-220ENST00000559556 PROM2Q8N271 834 aa18.6■□□□□ 0.57
TPM1-220ENST00000559556 GOLGB1Q14789 3259 aaKnown RBP18.59■□□□□ 0.57
TPM1-220ENST00000559556 PUS7Q96PZ0 661 aaKnown RBP18.59■□□□□ 0.57
TPM1-220ENST00000559556 TAF1LQ8IZX4 1826 aa18.58■□□□□ 0.57
TPM1-220ENST00000559556 SLC12A5Q9H2X9 1139 aa18.58■□□□□ 0.56
TPM1-220ENST00000559556 TMC1Q8TDI8 760 aa18.57■□□□□ 0.56
TPM1-220ENST00000559556 TERF2IPQ9NYB0 399 aa18.57■□□□□ 0.56
TPM1-220ENST00000559556 PPP1R1BQ9UD71 204 aaPredicted RBP18.57■□□□□ 0.56
TPM1-220ENST00000559556 ITGB4P16144 1822 aa18.57■□□□□ 0.56
TPM1-220ENST00000559556 TXNRD1Q16881 649 aa18.56■□□□□ 0.56
TPM1-220ENST00000559556 MAP2P11137 1827 aaKnown RBP18.56■□□□□ 0.56
TPM1-220ENST00000559556 IL2RBP14784 551 aa18.55■□□□□ 0.56
TPM1-220ENST00000559556 ANKRD24Q8TF21 1146 aa18.55■□□□□ 0.56
TPM1-220ENST00000559556 NLRP2Q9NX02 1062 aa18.55■□□□□ 0.56
TPM1-220ENST00000559556 ANKRD26Q9UPS8 1709 aa18.54■□□□□ 0.56
TPM1-220ENST00000559556 PDGFDQ9GZP0 370 aaPredicted RBP18.54■□□□□ 0.56
TPM1-220ENST00000559556 TESK2Q96S53 571 aa18.53■□□□□ 0.56
TPM1-220ENST00000559556 SLC15A2Q16348 729 aa18.52■□□□□ 0.56
TPM1-220ENST00000559556 STK32BQ9NY57 414 aa18.52■□□□□ 0.56
TPM1-220ENST00000559556 C5P01031 1676 aa18.51■□□□□ 0.55
TPM1-220ENST00000559556 PKD1L3Q7Z443 1732 aa18.5■□□□□ 0.55
TPM1-220ENST00000559556 PTGER2P43116 358 aa18.5■□□□□ 0.55
TPM1-220ENST00000559556 IP6K1Q92551 441 aa18.5■□□□□ 0.55
TPM1-220ENST00000559556 ACSBG1Q96GR2 724 aa18.5■□□□□ 0.55
TPM1-220ENST00000559556 ZBTB7AO95365 584 aa18.49■□□□□ 0.55
TPM1-220ENST00000559556 ANKRD36BQ8N2N9 1353 aa18.49■□□□□ 0.55
TPM1-220ENST00000559556 ST20-MTHFSA0A0A6YYL1 179 aa18.48■□□□□ 0.55
TPM1-220ENST00000559556 YY1P25490 414 aa18.48■□□□□ 0.55
TPM1-220ENST00000559556 RTL1A6NKG5 1358 aa18.47■□□□□ 0.55
TPM1-220ENST00000559556 TOGARAM1Q9Y4F4 1720 aa18.47■□□□□ 0.55
TPM1-220ENST00000559556 SLC24A1O60721 1099 aa18.47■□□□□ 0.55
TPM1-220ENST00000559556 MEGF6O75095 1541 aa18.46■□□□□ 0.55
TPM1-220ENST00000559556 MAP3K19Q56UN5 1328 aa18.46■□□□□ 0.55
TPM1-220ENST00000559556 DCAF8L1A6NGE4 600 aa18.45■□□□□ 0.54
TPM1-220ENST00000559556 COG3Q96JB2 828 aa18.45■□□□□ 0.54
TPM1-220ENST00000559556 SGIP1Q9BQI5 828 aa18.45■□□□□ 0.54
TPM1-220ENST00000559556 MTFR1LQ9H019 292 aa18.45■□□□□ 0.54
TPM1-220ENST00000559556 HOXC9P31274 260 aa18.44■□□□□ 0.54
TPM1-220ENST00000559556 ATF5Q9Y2D1 282 aaPredicted RBP18.44■□□□□ 0.54
TPM1-220ENST00000559556 UBR3Q6ZT12 1888 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms