RNA–Protein interactions for RNA: ENST00000558911.1

LRRC28-212, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-212ENST00000558911 NBPF14Q5TI25 921 aa6.62□□□□□ -1.35
LRRC28-212ENST00000558911 PRPF38BQ5VTL8 546 aaKnown RBP6.62□□□□□ -1.35
LRRC28-212ENST00000558911 TRIM66O15016 1216 aa6.61□□□□□ -1.35
LRRC28-212ENST00000558911 GSK3AP49840 483 aa6.61□□□□□ -1.35
LRRC28-212ENST00000558911 CCDC155Q8N6L0 562 aa6.61□□□□□ -1.35
LRRC28-212ENST00000558911 HELBQ8NG08 1087 aaPredicted RBP6.61□□□□□ -1.35
LRRC28-212ENST00000558911 RTL5Q5HYW3 569 aaPredicted RBP6.6□□□□□ -1.35
LRRC28-212ENST00000558911 PPP1R26Q5T8A7 1209 aaPredicted RBP6.6□□□□□ -1.35
LRRC28-212ENST00000558911 MYSM1Q5VVJ2 828 aa6.6□□□□□ -1.35
LRRC28-212ENST00000558911 SH3RF1Q7Z6J0 888 aa6.6□□□□□ -1.35
LRRC28-212ENST00000558911 VWA5B2Q8N398 1253 aa6.6□□□□□ -1.35
LRRC28-212ENST00000558911 AGBL1Q96MI9 1066 aa6.6□□□□□ -1.35
LRRC28-212ENST00000558911 C1QTNF2Q9BXJ5 285 aa6.6□□□□□ -1.35
LRRC28-212ENST00000558911 RNF225M0QZC1 329 aaPredicted RBP6.59□□□□□ -1.35
LRRC28-212ENST00000558911 RELBQ01201 579 aa6.59□□□□□ -1.35
LRRC28-212ENST00000558911 RNFT1Q5M7Z0 435 aa6.59□□□□□ -1.35
LRRC28-212ENST00000558911 SH3BP5LQ7L8J4 393 aa6.59□□□□□ -1.35
LRRC28-212ENST00000558911 WHAMMQ8TF30 809 aa6.59□□□□□ -1.35
LRRC28-212ENST00000558911 PGPEP1Q9NXJ5 209 aa6.59□□□□□ -1.35
LRRC28-212ENST00000558911 LILRB3O75022 631 aa6.58□□□□□ -1.36
LRRC28-212ENST00000558911 IRS1P35568 1242 aa6.58□□□□□ -1.36
LRRC28-212ENST00000558911 ERFEQ4G0M1 354 aa6.58□□□□□ -1.36
LRRC28-212ENST00000558911 ZNF385CQ66K41 422 aaPredicted RBP6.58□□□□□ -1.36
LRRC28-212ENST00000558911 GPAT2Q6NUI2 795 aa6.58□□□□□ -1.36
LRRC28-212ENST00000558911 ATP1B4Q9UN42 357 aaPredicted RBP6.58□□□□□ -1.36
LRRC28-212ENST00000558911 MAP4K5Q9Y4K4 846 aa6.58□□□□□ -1.36
LRRC28-212ENST00000558911 MARSP56192 900 aaKnown RBP6.57□□□□□ -1.36
LRRC28-212ENST00000558911 RAB15P59190 212 aa6.57□□□□□ -1.36
LRRC28-212ENST00000558911 TRMT44Q8IYL2 757 aaKnown RBP6.57□□□□□ -1.36
LRRC28-212ENST00000558911 AK7Q96M32 723 aa6.57□□□□□ -1.36
LRRC28-212ENST00000558911 ARHGAP9Q9BRR9 750 aa6.57□□□□□ -1.36
LRRC28-212ENST00000558911 POLMQ9NP87 494 aaPredicted RBP6.57□□□□□ -1.36
LRRC28-212ENST00000558911 POLR3EQ9NVU0 708 aa6.57□□□□□ -1.36
LRRC28-212ENST00000558911 SPINT1O43278 529 aa6.56□□□□□ -1.36
LRRC28-212ENST00000558911 CTSOP43234 321 aaPredicted RBP6.56□□□□□ -1.36
LRRC28-212ENST00000558911 ZBTB33Q86T24 672 aa6.56□□□□□ -1.36
LRRC28-212ENST00000558911 SLC10A4Q96EP9 437 aa6.56□□□□□ -1.36
LRRC28-212ENST00000558911 KCTD15Q96SI1 283 aaPredicted RBP6.56□□□□□ -1.36
LRRC28-212ENST00000558911 INSM2Q96T92 566 aaPredicted RBP6.56□□□□□ -1.36
LRRC28-212ENST00000558911 ZNF395Q9H8N7 513 aaPredicted RBP6.56□□□□□ -1.36
LRRC28-212ENST00000558911 SLC35F4A4IF30 521 aa6.55□□□□□ -1.36
LRRC28-212ENST00000558911 CTDSPL2Q05D32 466 aa6.55□□□□□ -1.36
LRRC28-212ENST00000558911 TPRNQ4KMQ1 711 aa6.55□□□□□ -1.36
LRRC28-212ENST00000558911 SV2AQ7L0J3 742 aa6.55□□□□□ -1.36
LRRC28-212ENST00000558911 ITGA6P23229 1130 aa6.54□□□□□ -1.36
LRRC28-212ENST00000558911 CLK2P49760 499 aaKnown RBP6.54□□□□□ -1.36
LRRC28-212ENST00000558911 PDE4DQ08499 809 aa6.54□□□□□ -1.36
LRRC28-212ENST00000558911 Q6ZVU0 165 aa6.54□□□□□ -1.36
LRRC28-212ENST00000558911 LRRN4Q8WUT4 740 aa6.53□□□□□ -1.36
LRRC28-212ENST00000558911 NANOS1Q8WY41 292 aaKnown RBP6.53□□□□□ -1.36
LRRC28-212ENST00000558911 DHX9Q08211 1270 aaKnown RBP6.52□□□□□ -1.37
LRRC28-212ENST00000558911 GPKOWQ92917 476 aaPredicted RBP eCLIP6.52□□□□□ -1.37
LRRC28-212ENST00000558911 TMPRSS4Q9NRS4 437 aa6.52□□□□□ -1.37
LRRC28-212ENST00000558911 ADAMTS2O95450 1211 aa6.51□□□□□ -1.37
LRRC28-212ENST00000558911 NR6A1Q15406 480 aa6.51□□□□□ -1.37
LRRC28-212ENST00000558911 INTS6LQ5JSJ4 861 aaKnown RBP6.51□□□□□ -1.37
LRRC28-212ENST00000558911 ILDR2Q71H61 639 aa6.51□□□□□ -1.37
LRRC28-212ENST00000558911 MAP3K10Q02779 954 aa6.5□□□□□ -1.37
LRRC28-212ENST00000558911 TUSC1Q2TAM9 212 aa6.5□□□□□ -1.37
LRRC28-212ENST00000558911 PDXDC2PQ6P474 469 aa6.5□□□□□ -1.37
LRRC28-212ENST00000558911 LYPD4Q6UWN0 246 aa6.5□□□□□ -1.37
LRRC28-212ENST00000558911 SLC24A3Q9HC58 644 aa6.5□□□□□ -1.37
LRRC28-212ENST00000558911 FKBPLQ9UIM3 349 aa6.5□□□□□ -1.37
LRRC28-212ENST00000558911 ARHGEF15O94989 841 aa6.49□□□□□ -1.37
LRRC28-212ENST00000558911 SLURP2P0DP57 97 aa6.49□□□□□ -1.37
LRRC28-212ENST00000558911 RNF217Q8TC41 542 aa6.49□□□□□ -1.37
LRRC28-212ENST00000558911 SCARF2Q96GP6 870 aaPredicted RBP6.49□□□□□ -1.37
LRRC28-212ENST00000558911 DNMT3AQ9Y6K1 912 aaPredicted RBP6.49□□□□□ -1.37
LRRC28-212ENST00000558911 RHOQP17081 205 aa6.48□□□□□ -1.37
LRRC28-212ENST00000558911 PRICKLE2Q7Z3G6 844 aa6.48□□□□□ -1.37
LRRC28-212ENST00000558911 ZNF784Q8NCA9 323 aaPredicted RBP6.48□□□□□ -1.37
LRRC28-212ENST00000558911 CDV3Q9UKY7 258 aaKnown RBP6.48□□□□□ -1.37
LRRC28-212ENST00000558911 SENP3-EIF4A1A0A087X0R7 540 aa6.47□□□□□ -1.37
LRRC28-212ENST00000558911 PTK2Q05397 1052 aa6.47□□□□□ -1.37
LRRC28-212ENST00000558911 ADAM32Q8TC27 787 aa6.47□□□□□ -1.37
LRRC28-212ENST00000558911 RSPH6AQ9H0K4 717 aa6.47□□□□□ -1.37
LRRC28-212ENST00000558911 GPR25O00155 361 aa6.46□□□□□ -1.38
LRRC28-212ENST00000558911 CELA2BP08218 269 aaPredicted RBP6.46□□□□□ -1.38
LRRC28-212ENST00000558911 KANK3Q6NY19 840 aa6.46□□□□□ -1.38
LRRC28-212ENST00000558911 CUEDC1Q9NWM3 386 aaPredicted RBP6.46□□□□□ -1.38
LRRC28-212ENST00000558911 AP1G2O75843 785 aa6.45□□□□□ -1.38
LRRC28-212ENST00000558911 ADH1AP07327 375 aa6.45□□□□□ -1.38
LRRC28-212ENST00000558911 ADD1P35611 737 aaKnown RBP6.45□□□□□ -1.38
LRRC28-212ENST00000558911 FOXD4L5Q5VV16 416 aaPredicted RBP6.45□□□□□ -1.38
LRRC28-212ENST00000558911 RIPOR1Q6ZS17 1223 aa6.45□□□□□ -1.38
LRRC28-212ENST00000558911 LYSMD3Q7Z3D4 306 aa6.45□□□□□ -1.38
LRRC28-212ENST00000558911 DZIP3Q86Y13 1208 aaKnown RBP6.45□□□□□ -1.38
LRRC28-212ENST00000558911 OCSTAMPQ9BR26 566 aa6.45□□□□□ -1.38
LRRC28-212ENST00000558911 ERVH48-1M5A8F1 160 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 IGHA1P01876 353 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 PTGIRP43119 386 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 SRSF11Q05519 484 aaKnown RBP6.44□□□□□ -1.38
LRRC28-212ENST00000558911 NBPF20Q3BBV1 942 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 NEDD1Q8NHV4 660 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 EPS8L1Q8TE68 723 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 CYLDQ9NQC7 956 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 TIMELESSQ9UNS1 1208 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 CNTNAP5Q8WYK1 1306 aa6.44□□□□□ -1.38
LRRC28-212ENST00000558911 FOXK2Q01167 660 aa6.43□□□□□ -1.38
LRRC28-212ENST00000558911 GAS6Q14393 721 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms