RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 CCDC9Q9Y3X0 531 aaKnown RBP17.18■□□□□ 0.34
LRRC28-206ENST00000558471 GLI3P10071 1580 aa17.17■□□□□ 0.34
LRRC28-206ENST00000558471 PER1O15534 1290 aaPredicted RBP17.16■□□□□ 0.34
LRRC28-206ENST00000558471 KNSTRNQ9Y448 316 aa17.16■□□□□ 0.34
LRRC28-206ENST00000558471 LARP1Q6PKG0 1096 aaKnown RBP17.15■□□□□ 0.34
LRRC28-206ENST00000558471 COL5A2P05997 1499 aaPredicted RBP17.15■□□□□ 0.34
LRRC28-206ENST00000558471 ANKRD26Q9UPS8 1709 aa17.15■□□□□ 0.34
LRRC28-206ENST00000558471 SPATA31A5Q5VU36 1347 aa17.15■□□□□ 0.34
LRRC28-206ENST00000558471 SPATA31A7Q8IWB4 1347 aa17.15■□□□□ 0.34
LRRC28-206ENST00000558471 MAP3K19Q56UN5 1328 aa17.14■□□□□ 0.33
LRRC28-206ENST00000558471 CDK12Q9NYV4 1490 aaPredicted RBP17.13■□□□□ 0.33
LRRC28-206ENST00000558471 RRS1Q15050 365 aaKnown RBP17.13■□□□□ 0.33
LRRC28-206ENST00000558471 MAP2P11137 1827 aaKnown RBP17.12■□□□□ 0.33
LRRC28-206ENST00000558471 ABCC6O95255 1503 aa17.12■□□□□ 0.33
LRRC28-206ENST00000558471 AMER1Q5JTC6 1135 aaPredicted RBP17.12■□□□□ 0.33
LRRC28-206ENST00000558471 IP6K1Q92551 441 aa17.12■□□□□ 0.33
LRRC28-206ENST00000558471 SPATA31A1Q5TZJ5 1347 aa17.12■□□□□ 0.33
LRRC28-206ENST00000558471 RGS12O14924 1447 aa17.12■□□□□ 0.33
LRRC28-206ENST00000558471 ONECUT3O60422 494 aaPredicted RBP17.11■□□□□ 0.33
LRRC28-206ENST00000558471 USP35Q9P2H5 1018 aa17.11■□□□□ 0.33
LRRC28-206ENST00000558471 NSD2O96028 1365 aa17.11■□□□□ 0.33
LRRC28-206ENST00000558471 HOXC9P31274 260 aa17.1■□□□□ 0.33
LRRC28-206ENST00000558471 TNNT2P45379 298 aaPredicted RBP17.1■□□□□ 0.33
LRRC28-206ENST00000558471 AMPHP49418 695 aa17.1■□□□□ 0.33
LRRC28-206ENST00000558471 WDR17Q8IZU2 1322 aa17.1■□□□□ 0.33
LRRC28-206ENST00000558471 CSB-PGBD3P0DP91 1061 aa17.09■□□□□ 0.33
LRRC28-206ENST00000558471 FAM98CQ17RN3 349 aaKnown RBP17.09■□□□□ 0.33
LRRC28-206ENST00000558471 TOM1L2Q6ZVM7 507 aa17.09■□□□□ 0.33
LRRC28-206ENST00000558471 PEAK1Q9H792 1746 aa17.08■□□□□ 0.32
LRRC28-206ENST00000558471 CRB1P82279 1406 aa17.08■□□□□ 0.32
LRRC28-206ENST00000558471 MORC1Q86VD1 984 aa17.08■□□□□ 0.32
LRRC28-206ENST00000558471 SEPT12Q8IYM1 358 aa17.08■□□□□ 0.32
LRRC28-206ENST00000558471 ANKRD24Q8TF21 1146 aa17.08■□□□□ 0.32
LRRC28-206ENST00000558471 EMILIN1Q9Y6C2 1016 aa17.08■□□□□ 0.32
LRRC28-206ENST00000558471 BRWD3Q6RI45 1802 aa17.07■□□□□ 0.32
LRRC28-206ENST00000558471 BLMP54132 1417 aaPredicted RBP17.07■□□□□ 0.32
LRRC28-206ENST00000558471 ERBB3P21860 1342 aa17.07■□□□□ 0.32
LRRC28-206ENST00000558471 CC2D1BQ5T0F9 858 aaKnown RBP17.07■□□□□ 0.32
LRRC28-206ENST00000558471 TCP11L2Q8N4U5 519 aa17.07■□□□□ 0.32
LRRC28-206ENST00000558471 LTV1Q96GA3 475 aaPredicted RBP17.07■□□□□ 0.32
LRRC28-206ENST00000558471 BARGINQ6ZT62 677 aa17.06■□□□□ 0.32
LRRC28-206ENST00000558471 POLKQ9UBT6 870 aa17.06■□□□□ 0.32
LRRC28-206ENST00000558471 RTL1A6NKG5 1358 aa17.05■□□□□ 0.32
LRRC28-206ENST00000558471 PPM1GO15355 546 aaPredicted RBP17.05■□□□□ 0.32
LRRC28-206ENST00000558471 CNGB1Q14028 1251 aaPredicted RBP17.05■□□□□ 0.32
LRRC28-206ENST00000558471 HSP90AB2PQ58FF8 381 aa17.05■□□□□ 0.32
LRRC28-206ENST00000558471 CARD10Q9BWT7 1032 aa17.05■□□□□ 0.32
LRRC28-206ENST00000558471 THRAP3Q9Y2W1 955 aaKnown RBP17.05■□□□□ 0.32
LRRC28-206ENST00000558471 KIF24Q5T7B8 1368 aa17.04■□□□□ 0.32
LRRC28-206ENST00000558471 NPC1L1Q9UHC9 1359 aa17.04■□□□□ 0.32
LRRC28-206ENST00000558471 A0A0G2JS52 829 aa17.04■□□□□ 0.32
LRRC28-206ENST00000558471 MYT1Q01538 1121 aa17.04■□□□□ 0.32
LRRC28-206ENST00000558471 NLRP2Q9NX02 1062 aa17.04■□□□□ 0.32
LRRC28-206ENST00000558471 RGPD2P0DJD1 1756 aa17.04■□□□□ 0.32
LRRC28-206ENST00000558471 FLT4P35916 1363 aa17.03■□□□□ 0.32
LRRC28-206ENST00000558471 SOCS7O14512 581 aa17.03■□□□□ 0.32
LRRC28-206ENST00000558471 DDX10Q13206 875 aaKnown RBP17.03■□□□□ 0.32
LRRC28-206ENST00000558471 THSD7AQ9UPZ6 1657 aa17.03■□□□□ 0.32
LRRC28-206ENST00000558471 INSRP06213 1382 aa17.02■□□□□ 0.32
LRRC28-206ENST00000558471 FAM208AQ9UK61 1670 aaKnown RBP17.01■□□□□ 0.31
LRRC28-206ENST00000558471 KRT27Q7Z3Y8 459 aa17■□□□□ 0.31
LRRC28-206ENST00000558471 WNK3Q9BYP7 1800 aa17■□□□□ 0.31
LRRC28-206ENST00000558471 NBPF6Q5VWK0 638 aa16.99■□□□□ 0.31
LRRC28-206ENST00000558471 NBPF4Q96M43 638 aa16.99■□□□□ 0.31
LRRC28-206ENST00000558471 PARP4Q9UKK3 1724 aaKnown RBP16.98■□□□□ 0.31
LRRC28-206ENST00000558471 SMG6Q86US8 1419 aaKnown RBP16.97■□□□□ 0.31
LRRC28-206ENST00000558471 ZNF316A6NFI3 1004 aaPredicted RBP16.97■□□□□ 0.31
LRRC28-206ENST00000558471 CDCA7Q9BWT1 371 aaPredicted RBP16.97■□□□□ 0.31
LRRC28-206ENST00000558471 DISP2A7MBM2 1401 aa16.96■□□□□ 0.31
LRRC28-206ENST00000558471 MTHFSP49914 203 aa16.96■□□□□ 0.31
LRRC28-206ENST00000558471 FAM182BQ5T319 152 aa16.96■□□□□ 0.31
LRRC28-206ENST00000558471 IL2RBP14784 551 aa16.95■□□□□ 0.3
LRRC28-206ENST00000558471 EIF4A2Q14240 407 aaKnown RBP16.95■□□□□ 0.3
LRRC28-206ENST00000558471 USHBP1Q8N6Y0 703 aa16.95■□□□□ 0.3
LRRC28-206ENST00000558471 PDE3BQ13370 1112 aa16.94■□□□□ 0.3
LRRC28-206ENST00000558471 DDB1Q16531 1140 aa16.94■□□□□ 0.3
LRRC28-206ENST00000558471 UPF1Q92900 1129 aaKnown RBP eCLIP16.94■□□□□ 0.3
LRRC28-206ENST00000558471 LRRC37A3O60309 1634 aa16.94■□□□□ 0.3
LRRC28-206ENST00000558471 EXOC5O00471 708 aa16.93■□□□□ 0.3
LRRC28-206ENST00000558471 EYA1Q99502 592 aa16.93■□□□□ 0.3
LRRC28-206ENST00000558471 PPP2R1AP30153 589 aa16.9■□□□□ 0.3
LRRC28-206ENST00000558471 IL13P35225 146 aa16.89■□□□□ 0.29
LRRC28-206ENST00000558471 MARCH10Q8NA82 808 aaPredicted RBP16.89■□□□□ 0.29
LRRC28-206ENST00000558471 MEGF6O75095 1541 aa16.89■□□□□ 0.29
LRRC28-206ENST00000558471 NCAPD2Q15021 1401 aa16.88■□□□□ 0.29
LRRC28-206ENST00000558471 EP400Q96L91 3159 aa16.88■□□□□ 0.29
LRRC28-206ENST00000558471 FAM196AQ6ZSG2 479 aa16.88■□□□□ 0.29
LRRC28-206ENST00000558471 RAPGEF4Q8WZA2 1011 aa16.88■□□□□ 0.29
LRRC28-206ENST00000558471 PARD3Q8TEW0 1356 aa16.88■□□□□ 0.29
LRRC28-206ENST00000558471 TNS2Q63HR2 1409 aa16.87■□□□□ 0.29
LRRC28-206ENST00000558471 IGSF1Q8N6C5 1336 aa16.87■□□□□ 0.29
LRRC28-206ENST00000558471 DIAPH1O60610 1272 aaKnown RBP16.86■□□□□ 0.29
LRRC28-206ENST00000558471 TATP17735 454 aaPredicted RBP16.86■□□□□ 0.29
LRRC28-206ENST00000558471 ZCRB1Q8TBF4 217 aaKnown RBP16.86■□□□□ 0.29
LRRC28-206ENST00000558471 OVOS2A0A0G2JMS6 1433 aa16.86■□□□□ 0.29
LRRC28-206ENST00000558471 RGPD1P0DJD0 1748 aa16.85■□□□□ 0.29
LRRC28-206ENST00000558471 CCDC125Q86Z20 511 aa16.85■□□□□ 0.29
LRRC28-206ENST00000558471 COL3A1P02461 1466 aaPredicted RBP16.85■□□□□ 0.29
LRRC28-206ENST00000558471 SHANK3Q9BYB0 1731 aa16.84■□□□□ 0.29
LRRC28-206ENST00000558471 SBF2Q86WG5 1849 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms