RNA–Protein interactions for RNA: ENST00000557623.5

SLIRP-211, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 865 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-211ENST00000557623 VPS72Q15906 364 aa17.36■□□□□ 0.37
SLIRP-211ENST00000557623 USP31Q70CQ4 1352 aa17.36■□□□□ 0.37
SLIRP-211ENST00000557623 GLI3P10071 1580 aa17.35■□□□□ 0.37
SLIRP-211ENST00000557623 LMO7Q8WWI1 1683 aa17.35■□□□□ 0.37
SLIRP-211ENST00000557623 RGS12O14924 1447 aa17.34■□□□□ 0.37
SLIRP-211ENST00000557623 CHRNA2Q15822 529 aa17.34■□□□□ 0.37
SLIRP-211ENST00000557623 KIF20BQ96Q89 1820 aa17.34■□□□□ 0.37
SLIRP-211ENST00000557623 CCDC9Q9Y3X0 531 aaKnown RBP17.34■□□□□ 0.37
SLIRP-211ENST00000557623 NME9Q86XW9 330 aa17.33■□□□□ 0.36
SLIRP-211ENST00000557623 LTN1O94822 1766 aa17.32■□□□□ 0.36
SLIRP-211ENST00000557623 COL18A1P39060 1754 aa17.32■□□□□ 0.36
SLIRP-211ENST00000557623 NFAT5O94916 1531 aa17.31■□□□□ 0.36
SLIRP-211ENST00000557623 RGPD5Q99666 1765 aa17.31■□□□□ 0.36
SLIRP-211ENST00000557623 EVA1CP58658 441 aa17.31■□□□□ 0.36
SLIRP-211ENST00000557623 POLR3GLQ9BT43 218 aa17.31■□□□□ 0.36
SLIRP-211ENST00000557623 CAMTA1Q9Y6Y1 1673 aa17.31■□□□□ 0.36
SLIRP-211ENST00000557623 OVOS2A0A0J9YW53 1432 aa17.3■□□□□ 0.36
SLIRP-211ENST00000557623 OVOS2Q6IE36 1432 aa17.3■□□□□ 0.36
SLIRP-211ENST00000557623 AATKQ6ZMQ8 1374 aa17.3■□□□□ 0.36
SLIRP-211ENST00000557623 ZBTB7CA1YPR0 619 aa17.3■□□□□ 0.36
SLIRP-211ENST00000557623 ZRANB1Q9UGI0 708 aa17.3■□□□□ 0.36
SLIRP-211ENST00000557623 ABCC6O95255 1503 aa17.3■□□□□ 0.36
SLIRP-211ENST00000557623 SOX12O15370 315 aa17.29■□□□□ 0.36
SLIRP-211ENST00000557623 BRWD3Q6RI45 1802 aa17.28■□□□□ 0.36
SLIRP-211ENST00000557623 ARHGEF25Q86VW2 580 aa17.28■□□□□ 0.36
SLIRP-211ENST00000557623 COG3Q96JB2 828 aa17.28■□□□□ 0.36
SLIRP-211ENST00000557623 STRN4Q9NRL3 753 aa17.28■□□□□ 0.36
SLIRP-211ENST00000557623 SPATA31A5Q5VU36 1347 aa17.27■□□□□ 0.36
SLIRP-211ENST00000557623 SPATA31A7Q8IWB4 1347 aa17.27■□□□□ 0.36
SLIRP-211ENST00000557623 COL5A2P05997 1499 aaPredicted RBP17.27■□□□□ 0.36
SLIRP-211ENST00000557623 ONECUT3O60422 494 aaPredicted RBP17.26■□□□□ 0.35
SLIRP-211ENST00000557623 NSD3Q9BZ95 1437 aa17.25■□□□□ 0.35
SLIRP-211ENST00000557623 FYB1O15117 783 aa17.25■□□□□ 0.35
SLIRP-211ENST00000557623 SPATA31A1Q5TZJ5 1347 aa17.24■□□□□ 0.35
SLIRP-211ENST00000557623 CARD14Q9BXL6 1004 aa17.24■□□□□ 0.35
SLIRP-211ENST00000557623 C11orf95C9JLR9 678 aaPredicted RBP17.23■□□□□ 0.35
SLIRP-211ENST00000557623 FAM98CQ17RN3 349 aaKnown RBP17.23■□□□□ 0.35
SLIRP-211ENST00000557623 SEPT12Q8IYM1 358 aa17.23■□□□□ 0.35
SLIRP-211ENST00000557623 ANKRD26Q9UPS8 1709 aa17.23■□□□□ 0.35
SLIRP-211ENST00000557623 THSD7AQ9UPZ6 1657 aa17.23■□□□□ 0.35
SLIRP-211ENST00000557623 CRB1P82279 1406 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 A0A0G2JS52 829 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 SPDYE2BA6NHP3 402 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 SPDYE6P0CI01 402 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 MYT1Q01538 1121 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 SPDYE2Q495Y8 402 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 LARP1Q6PKG0 1096 aaKnown RBP17.22■□□□□ 0.35
SLIRP-211ENST00000557623 GGNBP2Q9H3C7 697 aa17.22■□□□□ 0.35
SLIRP-211ENST00000557623 CGNL1Q0VF96 1302 aa17.21■□□□□ 0.35
SLIRP-211ENST00000557623 AXIN2Q9Y2T1 843 aa17.21■□□□□ 0.35
SLIRP-211ENST00000557623 THRAP3Q9Y2W1 955 aaKnown RBP17.21■□□□□ 0.35
SLIRP-211ENST00000557623 KIF7Q2M1P5 1343 aa17.21■□□□□ 0.34
SLIRP-211ENST00000557623 WDR17Q8IZU2 1322 aa17.21■□□□□ 0.34
SLIRP-211ENST00000557623 WNK3Q9BYP7 1800 aa17.2■□□□□ 0.34
SLIRP-211ENST00000557623 BARGINQ6ZT62 677 aa17.2■□□□□ 0.34
SLIRP-211ENST00000557623 TCP11L2Q8N4U5 519 aa17.2■□□□□ 0.34
SLIRP-211ENST00000557623 PANK3Q9H999 370 aa17.2■□□□□ 0.34
SLIRP-211ENST00000557623 USP35Q9P2H5 1018 aa17.2■□□□□ 0.34
SLIRP-211ENST00000557623 FAM208AQ9UK61 1670 aaKnown RBP17.2■□□□□ 0.34
SLIRP-211ENST00000557623 CSB-PGBD3P0DP91 1061 aa17.19■□□□□ 0.34
SLIRP-211ENST00000557623 TOM1L2Q6ZVM7 507 aa17.19■□□□□ 0.34
SLIRP-211ENST00000557623 BLMP54132 1417 aaPredicted RBP17.19■□□□□ 0.34
SLIRP-211ENST00000557623 KRT27Q7Z3Y8 459 aa17.18■□□□□ 0.34
SLIRP-211ENST00000557623 UPF1Q92900 1129 aaKnown RBP eCLIP17.18■□□□□ 0.34
SLIRP-211ENST00000557623 MAP2P11137 1827 aaKnown RBP17.18■□□□□ 0.34
SLIRP-211ENST00000557623 PARP4Q9UKK3 1724 aaKnown RBP17.18■□□□□ 0.34
SLIRP-211ENST00000557623 IP6K1Q92551 441 aa17.17■□□□□ 0.34
SLIRP-211ENST00000557623 AMPHP49418 695 aa17.16■□□□□ 0.34
SLIRP-211ENST00000557623 MAP3K19Q56UN5 1328 aa17.16■□□□□ 0.34
SLIRP-211ENST00000557623 RTL1A6NKG5 1358 aa17.15■□□□□ 0.34
SLIRP-211ENST00000557623 NSD2O96028 1365 aa17.15■□□□□ 0.34
SLIRP-211ENST00000557623 CCDC7Q96M83 1385 aa17.15■□□□□ 0.34
SLIRP-211ENST00000557623 CARD10Q9BWT7 1032 aa17.15■□□□□ 0.34
SLIRP-211ENST00000557623 ERBB3P21860 1342 aa17.15■□□□□ 0.34
SLIRP-211ENST00000557623 KNSTRNQ9Y448 316 aa17.14■□□□□ 0.33
SLIRP-211ENST00000557623 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
SLIRP-211ENST00000557623 HOXC9P31274 260 aa17.13■□□□□ 0.33
SLIRP-211ENST00000557623 RRS1Q15050 365 aaKnown RBP17.13■□□□□ 0.33
SLIRP-211ENST00000557623 ANKRD24Q8TF21 1146 aa17.13■□□□□ 0.33
SLIRP-211ENST00000557623 CDCA7Q9BWT1 371 aaPredicted RBP17.13■□□□□ 0.33
SLIRP-211ENST00000557623 FBLN1P23142 703 aa17.12■□□□□ 0.33
SLIRP-211ENST00000557623 CCDC125Q86Z20 511 aa17.12■□□□□ 0.33
SLIRP-211ENST00000557623 AKT1S1Q96B36 256 aa17.12■□□□□ 0.33
SLIRP-211ENST00000557623 WASHC2AQ641Q2 1341 aa17.12■□□□□ 0.33
SLIRP-211ENST00000557623 PEAK1Q9H792 1746 aa17.11■□□□□ 0.33
SLIRP-211ENST00000557623 RGPD2P0DJD1 1756 aa17.11■□□□□ 0.33
SLIRP-211ENST00000557623 PDE3BQ13370 1112 aa17.11■□□□□ 0.33
SLIRP-211ENST00000557623 NLRP2Q9NX02 1062 aa17.11■□□□□ 0.33
SLIRP-211ENST00000557623 LRRC37A3O60309 1634 aa17.1■□□□□ 0.33
SLIRP-211ENST00000557623 FLT4P35916 1363 aa17.1■□□□□ 0.33
SLIRP-211ENST00000557623 ZEB1P37275 1124 aaPredicted RBP17.09■□□□□ 0.33
SLIRP-211ENST00000557623 LTV1Q96GA3 475 aaPredicted RBP17.09■□□□□ 0.33
SLIRP-211ENST00000557623 SMG6Q86US8 1419 aaKnown RBP17.09■□□□□ 0.33
SLIRP-211ENST00000557623 RGPD1P0DJD0 1748 aa17.09■□□□□ 0.33
SLIRP-211ENST00000557623 INSRP06213 1382 aa17.08■□□□□ 0.32
SLIRP-211ENST00000557623 DDB1Q16531 1140 aa17.08■□□□□ 0.32
SLIRP-211ENST00000557623 DISP2A7MBM2 1401 aa17.07■□□□□ 0.32
SLIRP-211ENST00000557623 SF3B2Q13435 895 aaKnown RBP17.06■□□□□ 0.32
SLIRP-211ENST00000557623 FAM196AQ6ZSG2 479 aa17.06■□□□□ 0.32
SLIRP-211ENST00000557623 MORC1Q86VD1 984 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms