RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SLIT2O94813 1529 aa17.4■□□□□ 0.38
SHMT2-227ENST00000557269 PLCH1Q4KWH8 1693 aa17.39■□□□□ 0.37
SHMT2-227ENST00000557269 AMPHP49418 695 aa17.39■□□□□ 0.37
SHMT2-227ENST00000557269 MTHFSP49914 203 aa17.39■□□□□ 0.37
SHMT2-227ENST00000557269 RALBP1Q15311 655 aa17.39■□□□□ 0.37
SHMT2-227ENST00000557269 BCL9LQ86UU0 1499 aa17.38■□□□□ 0.37
SHMT2-227ENST00000557269 HSP90AB2PQ58FF8 381 aa17.38■□□□□ 0.37
SHMT2-227ENST00000557269 AFF2P51816 1311 aa17.38■□□□□ 0.37
SHMT2-227ENST00000557269 RGPD5Q99666 1765 aa17.38■□□□□ 0.37
SHMT2-227ENST00000557269 SMG6Q86US8 1419 aaKnown RBP17.38■□□□□ 0.37
SHMT2-227ENST00000557269 RGS17Q9UGC6 210 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-227ENST00000557269 RTL1A6NKG5 1358 aa17.36■□□□□ 0.37
SHMT2-227ENST00000557269 FLT4P35916 1363 aa17.36■□□□□ 0.37
SHMT2-227ENST00000557269 DIEXFQ68CQ4 756 aaKnown RBP17.35■□□□□ 0.37
SHMT2-227ENST00000557269 LTV1Q96GA3 475 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-227ENST00000557269 STRN4Q9NRL3 753 aa17.35■□□□□ 0.37
SHMT2-227ENST00000557269 USP21Q9UK80 565 aa17.35■□□□□ 0.37
SHMT2-227ENST00000557269 KIF24Q5T7B8 1368 aa17.35■□□□□ 0.37
SHMT2-227ENST00000557269 COL5A2P05997 1499 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-227ENST00000557269 NRAPQ86VF7 1730 aa17.35■□□□□ 0.37
SHMT2-227ENST00000557269 ANP32CO43423 234 aa17.34■□□□□ 0.37
SHMT2-227ENST00000557269 ABCC6O95255 1503 aa17.34■□□□□ 0.37
SHMT2-227ENST00000557269 UNC5CLQ8IV45 518 aa17.34■□□□□ 0.37
SHMT2-227ENST00000557269 NWD2Q9ULI1 1742 aa17.33■□□□□ 0.37
SHMT2-227ENST00000557269 CDK12Q9NYV4 1490 aaPredicted RBP17.33■□□□□ 0.37
SHMT2-227ENST00000557269 BLMP54132 1417 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-227ENST00000557269 INSRP06213 1382 aa17.33■□□□□ 0.36
SHMT2-227ENST00000557269 MYBBP1AQ9BQG0 1328 aaKnown RBP17.33■□□□□ 0.36
SHMT2-227ENST00000557269 LARP1Q6PKG0 1096 aaKnown RBP17.33■□□□□ 0.36
SHMT2-227ENST00000557269 ANKRD24Q8TF21 1146 aa17.33■□□□□ 0.36
SHMT2-227ENST00000557269 ERBB3P21860 1342 aa17.32■□□□□ 0.36
SHMT2-227ENST00000557269 EVA1CP58658 441 aa17.32■□□□□ 0.36
SHMT2-227ENST00000557269 EIF4A2Q14240 407 aaKnown RBP17.31■□□□□ 0.36
SHMT2-227ENST00000557269 COL3A1P02461 1466 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-227ENST00000557269 CCDC184Q52MB2 194 aa17.3■□□□□ 0.36
SHMT2-227ENST00000557269 WDR17Q8IZU2 1322 aa17.29■□□□□ 0.36
SHMT2-227ENST00000557269 CSB-PGBD3P0DP91 1061 aa17.29■□□□□ 0.36
SHMT2-227ENST00000557269 IL13P35225 146 aa17.29■□□□□ 0.36
SHMT2-227ENST00000557269 VPS72Q15906 364 aa17.29■□□□□ 0.36
SHMT2-227ENST00000557269 PHF23Q9BUL5 403 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-227ENST00000557269 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.29■□□□□ 0.36
SHMT2-227ENST00000557269 ATRNO75882 1429 aa17.29■□□□□ 0.36
SHMT2-227ENST00000557269 NBPF6Q5VWK0 638 aa17.28■□□□□ 0.36
SHMT2-227ENST00000557269 ZNF772Q68DY9 489 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-227ENST00000557269 POTEAQ6S8J7 498 aa17.28■□□□□ 0.36
SHMT2-227ENST00000557269 NBPF4Q96M43 638 aa17.28■□□□□ 0.36
SHMT2-227ENST00000557269 QTRT2Q9H974 415 aaKnown RBP17.28■□□□□ 0.36
SHMT2-227ENST00000557269 RGPD2P0DJD1 1756 aa17.28■□□□□ 0.36
SHMT2-227ENST00000557269 SPATA31A5Q5VU36 1347 aa17.27■□□□□ 0.36
SHMT2-227ENST00000557269 SPATA31A7Q8IWB4 1347 aa17.27■□□□□ 0.36
SHMT2-227ENST00000557269 TOM1L2Q6ZVM7 507 aa17.27■□□□□ 0.36
SHMT2-227ENST00000557269 NLRP2Q9NX02 1062 aa17.27■□□□□ 0.36
SHMT2-227ENST00000557269 TRPC5Q9UL62 973 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-227ENST00000557269 USHBP1Q8N6Y0 703 aa17.26■□□□□ 0.35
SHMT2-227ENST00000557269 EYA1Q99502 592 aa17.26■□□□□ 0.35
SHMT2-227ENST00000557269 USP35Q9P2H5 1018 aa17.26■□□□□ 0.35
SHMT2-227ENST00000557269 CCDC9Q9Y3X0 531 aaKnown RBP17.26■□□□□ 0.35
SHMT2-227ENST00000557269 CRB1P82279 1406 aa17.26■□□□□ 0.35
SHMT2-227ENST00000557269 SPATA31A1Q5TZJ5 1347 aa17.25■□□□□ 0.35
SHMT2-227ENST00000557269 DIAPH1O60610 1272 aaKnown RBP17.25■□□□□ 0.35
SHMT2-227ENST00000557269 MIER1Q8N108 512 aa17.25■□□□□ 0.35
SHMT2-227ENST00000557269 CFAP53Q96M91 514 aa17.25■□□□□ 0.35
SHMT2-227ENST00000557269 GLI3P10071 1580 aa17.24■□□□□ 0.35
SHMT2-227ENST00000557269 GJD4Q96KN9 370 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-227ENST00000557269 CARD10Q9BWT7 1032 aa17.24■□□□□ 0.35
SHMT2-227ENST00000557269 RGPD1P0DJD0 1748 aa17.22■□□□□ 0.35
SHMT2-227ENST00000557269 FAM208AQ9UK61 1670 aaKnown RBP17.22■□□□□ 0.35
SHMT2-227ENST00000557269 IGSF1Q8N6C5 1336 aa17.21■□□□□ 0.35
SHMT2-227ENST00000557269 AEBP1Q8IUX7 1158 aa17.21■□□□□ 0.35
SHMT2-227ENST00000557269 TCP11L2Q8N4U5 519 aa17.21■□□□□ 0.35
SHMT2-227ENST00000557269 U2SURPO15042 1029 aaKnown RBP17.2■□□□□ 0.34
SHMT2-227ENST00000557269 NCAPD2Q15021 1401 aa17.2■□□□□ 0.34
SHMT2-227ENST00000557269 HMOX1P09601 288 aa17.19■□□□□ 0.34
SHMT2-227ENST00000557269 RBM6P78332 1123 aaKnown RBP17.19■□□□□ 0.34
SHMT2-227ENST00000557269 FAM98CQ17RN3 349 aaKnown RBP17.19■□□□□ 0.34
SHMT2-227ENST00000557269 RXRBP28702 533 aa17.18■□□□□ 0.34
SHMT2-227ENST00000557269 SULT6B1Q6IMI4 303 aa17.18■□□□□ 0.34
SHMT2-227ENST00000557269 BARGINQ6ZT62 677 aa17.18■□□□□ 0.34
SHMT2-227ENST00000557269 MRS2Q9HD23 443 aa17.18■□□□□ 0.34
SHMT2-227ENST00000557269 DISP2A7MBM2 1401 aa17.17■□□□□ 0.34
SHMT2-227ENST00000557269 ONECUT3O60422 494 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-227ENST00000557269 THRAP3Q9Y2W1 955 aaKnown RBP17.17■□□□□ 0.34
SHMT2-227ENST00000557269 MEGF6O75095 1541 aa17.16■□□□□ 0.34
SHMT2-227ENST00000557269 U2AF1L5P0DN76 240 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-227ENST00000557269 U2AF1Q01081 240 aaKnown RBP eCLIP17.16■□□□□ 0.34
SHMT2-227ENST00000557269 NUDCQ9Y266 331 aa17.16■□□□□ 0.34
SHMT2-227ENST00000557269 KDRP35968 1356 aa17.15■□□□□ 0.34
SHMT2-227ENST00000557269 IL2RBP14784 551 aa17.15■□□□□ 0.34
SHMT2-227ENST00000557269 WNK3Q9BYP7 1800 aa17.14■□□□□ 0.34
SHMT2-227ENST00000557269 THSD7AQ9UPZ6 1657 aa17.14■□□□□ 0.33
SHMT2-227ENST00000557269 SEPT12Q8IYM1 358 aa17.14■□□□□ 0.33
SHMT2-227ENST00000557269 PNISRQ8TF01 805 aaKnown RBP17.14■□□□□ 0.33
SHMT2-227ENST00000557269 CCER2I3L3R5 266 aa17.13■□□□□ 0.33
SHMT2-227ENST00000557269 RSPH6AQ9H0K4 717 aa17.13■□□□□ 0.33
SHMT2-227ENST00000557269 ADAMTS8Q9UP79 889 aa17.13■□□□□ 0.33
SHMT2-227ENST00000557269 RAPGEF4Q8WZA2 1011 aa17.12■□□□□ 0.33
SHMT2-227ENST00000557269 RGS12O14924 1447 aa17.12■□□□□ 0.33
SHMT2-227ENST00000557269 A0A0G2JS52 829 aa17.11■□□□□ 0.33
SHMT2-227ENST00000557269 TATP17735 454 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-227ENST00000557269 MYT1Q01538 1121 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms