RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 ZBTB7CA1YPR0 619 aa13.11□□□□□ -0.31
TMEM260-213ENST00000556929 ZC3H6P61129 1189 aaKnown RBP13.11□□□□□ -0.31
TMEM260-213ENST00000556929 RGPD5Q99666 1765 aa13.11□□□□□ -0.31
TMEM260-213ENST00000556929 COL14A1Q05707 1796 aaKnown RBP13.1□□□□□ -0.31
TMEM260-213ENST00000556929 FBLN1P23142 703 aa13.1□□□□□ -0.31
TMEM260-213ENST00000556929 AMPHP49418 695 aa13.1□□□□□ -0.31
TMEM260-213ENST00000556929 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
TMEM260-213ENST00000556929 CFAP53Q96M91 514 aa13.1□□□□□ -0.31
TMEM260-213ENST00000556929 POLKQ9UBT6 870 aa13.1□□□□□ -0.31
TMEM260-213ENST00000556929 SMG6Q86US8 1419 aaKnown RBP13.1□□□□□ -0.31
TMEM260-213ENST00000556929 PEAK1Q9H792 1746 aa13.1□□□□□ -0.31
TMEM260-213ENST00000556929 RTL1A6NKG5 1358 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 CPDO75976 1380 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 ABCC6O95255 1503 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 NUTM2BA6NNL0 878 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-213ENST00000556929 NUTM2EB1AL46 878 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-213ENST00000556929 PPM1GO15355 546 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-213ENST00000556929 MTHFSP49914 203 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 ARHGEF25Q86VW2 580 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 NUTM2AQ8IVF1 878 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-213ENST00000556929 EMILIN1Q9Y6C2 1016 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 COL18A1P39060 1754 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 MAP3K19Q56UN5 1328 aa13.09□□□□□ -0.31
TMEM260-213ENST00000556929 FLT4P35916 1363 aa13.08□□□□□ -0.31
TMEM260-213ENST00000556929 KIAA0232Q92628 1395 aa13.08□□□□□ -0.31
TMEM260-213ENST00000556929 MIER1Q8N108 512 aa13.08□□□□□ -0.32
TMEM260-213ENST00000556929 PRDM11Q9NQV5 511 aa13.08□□□□□ -0.32
TMEM260-213ENST00000556929 CDK12Q9NYV4 1490 aaPredicted RBP13.08□□□□□ -0.32
TMEM260-213ENST00000556929 CCER2I3L3R5 266 aa13.07□□□□□ -0.32
TMEM260-213ENST00000556929 HOXC9P31274 260 aa13.07□□□□□ -0.32
TMEM260-213ENST00000556929 IP6K1Q92551 441 aa13.07□□□□□ -0.32
TMEM260-213ENST00000556929 PLCH1Q4KWH8 1693 aa13.07□□□□□ -0.32
TMEM260-213ENST00000556929 BLMP54132 1417 aaPredicted RBP13.06□□□□□ -0.32
TMEM260-213ENST00000556929 LMO7Q8WWI1 1683 aa13.06□□□□□ -0.32
TMEM260-213ENST00000556929 FAM208AQ9UK61 1670 aaKnown RBP13.06□□□□□ -0.32
TMEM260-213ENST00000556929 NWD2Q9ULI1 1742 aa13.06□□□□□ -0.32
TMEM260-213ENST00000556929 ADAMTS2O95450 1211 aa13.06□□□□□ -0.32
TMEM260-213ENST00000556929 MEX3CQ5U5Q3 659 aaKnown RBP13.05□□□□□ -0.32
TMEM260-213ENST00000556929 INSRP06213 1382 aa13.05□□□□□ -0.32
TMEM260-213ENST00000556929 LRP6O75581 1613 aa13.04□□□□□ -0.32
TMEM260-213ENST00000556929 CHRNA2Q15822 529 aa13.04□□□□□ -0.32
TMEM260-213ENST00000556929 MRS2Q9HD23 443 aa13.04□□□□□ -0.32
TMEM260-213ENST00000556929 ATF5Q9Y2D1 282 aaPredicted RBP13.04□□□□□ -0.32
TMEM260-213ENST00000556929 RGPD2P0DJD1 1756 aa13.03□□□□□ -0.32
TMEM260-213ENST00000556929 FAM83GA6ND36 823 aa13.03□□□□□ -0.32
TMEM260-213ENST00000556929 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
TMEM260-213ENST00000556929 HSP90AB2PQ58FF8 381 aa13.03□□□□□ -0.32
TMEM260-213ENST00000556929 NUDCQ9Y266 331 aa13.03□□□□□ -0.32
TMEM260-213ENST00000556929 COL3A1P02461 1466 aaPredicted RBP13.02□□□□□ -0.33
TMEM260-213ENST00000556929 CAMTA1Q9Y6Y1 1673 aa13.02□□□□□ -0.33
TMEM260-213ENST00000556929 NRAPQ86VF7 1730 aa13.02□□□□□ -0.33
TMEM260-213ENST00000556929 EVA1CP58658 441 aa13.01□□□□□ -0.33
TMEM260-213ENST00000556929 ANKRD24Q8TF21 1146 aa13.01□□□□□ -0.33
TMEM260-213ENST00000556929 NGLY1Q96IV0 654 aa13.01□□□□□ -0.33
TMEM260-213ENST00000556929 C8orf37Q96NL8 207 aa13.01□□□□□ -0.33
TMEM260-213ENST00000556929 BTG4Q9NY30 223 aa13.01□□□□□ -0.33
TMEM260-213ENST00000556929 AXIN2Q9Y2T1 843 aa13.01□□□□□ -0.33
TMEM260-213ENST00000556929 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.01□□□□□ -0.33
TMEM260-213ENST00000556929 COL5A2P05997 1499 aaPredicted RBP13□□□□□ -0.33
TMEM260-213ENST00000556929 CSB-PGBD3P0DP91 1061 aa13□□□□□ -0.33
TMEM260-213ENST00000556929 EIF4A2Q14240 407 aaKnown RBP13□□□□□ -0.33
TMEM260-213ENST00000556929 WDR43Q15061 677 aaKnown RBP eCLIP13□□□□□ -0.33
TMEM260-213ENST00000556929 CCDC184Q52MB2 194 aa13□□□□□ -0.33
TMEM260-213ENST00000556929 LTV1Q96GA3 475 aaPredicted RBP13□□□□□ -0.33
TMEM260-213ENST00000556929 RGPD1P0DJD0 1748 aa12.99□□□□□ -0.33
TMEM260-213ENST00000556929 SLIT2O94813 1529 aa12.99□□□□□ -0.33
TMEM260-213ENST00000556929 ERBB3P21860 1342 aa12.99□□□□□ -0.33
TMEM260-213ENST00000556929 U2SURPO15042 1029 aaKnown RBP12.99□□□□□ -0.33
TMEM260-213ENST00000556929 IL13P35225 146 aa12.99□□□□□ -0.33
TMEM260-213ENST00000556929 STRN4Q9NRL3 753 aa12.99□□□□□ -0.33
TMEM260-213ENST00000556929 WDR17Q8IZU2 1322 aa12.98□□□□□ -0.33
TMEM260-213ENST00000556929 POLA2Q14181 598 aa12.98□□□□□ -0.33
TMEM260-213ENST00000556929 ILDR1Q86SU0 546 aaPredicted RBP12.98□□□□□ -0.33
TMEM260-213ENST00000556929 FNBP4Q8N3X1 1017 aaPredicted RBP12.97□□□□□ -0.33
TMEM260-213ENST00000556929 U2AF1L5P0DN76 240 aaPredicted RBP12.96□□□□□ -0.33
TMEM260-213ENST00000556929 U2AF1Q01081 240 aaKnown RBP eCLIP12.96□□□□□ -0.33
TMEM260-213ENST00000556929 TOM1L2Q6ZVM7 507 aa12.96□□□□□ -0.33
TMEM260-213ENST00000556929 UNC5CLQ8IV45 518 aa12.96□□□□□ -0.33
TMEM260-213ENST00000556929 PNISRQ8TF01 805 aaKnown RBP12.96□□□□□ -0.33
TMEM260-213ENST00000556929 PNNQ9H307 717 aaKnown RBP12.96□□□□□ -0.33
TMEM260-213ENST00000556929 USP21Q9UK80 565 aa12.96□□□□□ -0.33
TMEM260-213ENST00000556929 CRB1P82279 1406 aa12.96□□□□□ -0.34
TMEM260-213ENST00000556929 AFF2P51816 1311 aa12.95□□□□□ -0.34
TMEM260-213ENST00000556929 IGSF1Q8N6C5 1336 aa12.95□□□□□ -0.34
TMEM260-213ENST00000556929 FAM9BQ8IZU0 186 aa12.95□□□□□ -0.34
TMEM260-213ENST00000556929 EYA1Q99502 592 aa12.95□□□□□ -0.34
TMEM260-213ENST00000556929 NLRP2Q9NX02 1062 aa12.95□□□□□ -0.34
TMEM260-213ENST00000556929 WNK3Q9BYP7 1800 aa12.95□□□□□ -0.34
TMEM260-213ENST00000556929 BCL9LQ86UU0 1499 aa12.94□□□□□ -0.34
TMEM260-213ENST00000556929 NBPF6Q5VWK0 638 aa12.94□□□□□ -0.34
TMEM260-213ENST00000556929 NBPF4Q96M43 638 aa12.94□□□□□ -0.34
TMEM260-213ENST00000556929 CARD10Q9BWT7 1032 aa12.94□□□□□ -0.34
TMEM260-213ENST00000556929 PARP4Q9UKK3 1724 aaKnown RBP12.93□□□□□ -0.34
TMEM260-213ENST00000556929 NEFMP07197 916 aa12.93□□□□□ -0.34
TMEM260-213ENST00000556929 SULT6B1Q6IMI4 303 aa12.93□□□□□ -0.34
TMEM260-213ENST00000556929 LARP1Q6PKG0 1096 aaKnown RBP12.93□□□□□ -0.34
TMEM260-213ENST00000556929 ADAMTS8Q9UP79 889 aa12.93□□□□□ -0.34
TMEM260-213ENST00000556929 CCDC9Q9Y3X0 531 aaKnown RBP12.93□□□□□ -0.34
TMEM260-213ENST00000556929 FCHSD2O94868 740 aa12.92□□□□□ -0.34
TMEM260-213ENST00000556929 HMOX1P09601 288 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms