RNA–Protein interactions for RNA: ENST00000555906.5

PRKCH-219, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 459 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-219	ENST00000555906	CD163L1	Q9NR16	1453 aa		28.08	■■■□□ 2.09
PRKCH-219	ENST00000555906	RGPD3	A6NKT7	1758 aa	Predicted RBP	28.07	■■■□□ 2.08
PRKCH-219	ENST00000555906	RGPD4	Q7Z3J3	1758 aa		28.07	■■■□□ 2.08
PRKCH-219	ENST00000555906	SBF2	Q86WG5	1849 aa		28.07	■■■□□ 2.08
PRKCH-219	ENST00000555906	OVOS2	A0A0G2JMS6	1433 aa		28.05	■■■□□ 2.08
PRKCH-219	ENST00000555906	OVOS2	A0A0J9YW53	1432 aa		28.05	■■■□□ 2.08
PRKCH-219	ENST00000555906	PSD	A5PKW4	1024 aa	Predicted RBP	28.05	■■■□□ 2.08
PRKCH-219	ENST00000555906	OVOS2	Q6IE36	1432 aa		28.05	■■■□□ 2.08
PRKCH-219	ENST00000555906	WDR17	Q8IZU2	1322 aa		28.05	■■■□□ 2.08
PRKCH-219	ENST00000555906	LTN1	O94822	1766 aa		28.04	■■■□□ 2.08
PRKCH-219	ENST00000555906	EZH2	Q15910	746 aa	Known RBP	28.04	■■■□□ 2.08
PRKCH-219	ENST00000555906	ARHGEF25	Q86VW2	580 aa		28.04	■■■□□ 2.08
PRKCH-219	ENST00000555906	CAMKK2	Q96RR4	588 aa		28.04	■■■□□ 2.08
PRKCH-219	ENST00000555906	USP31	Q70CQ4	1352 aa		28.02	■■■□□ 2.08
PRKCH-219	ENST00000555906	C11orf95	C9JLR9	678 aa	Predicted RBP	28.02	■■■□□ 2.08
PRKCH-219	ENST00000555906	TOM1L2	Q6ZVM7	507 aa		28.02	■■■□□ 2.08
PRKCH-219	ENST00000555906	APBA3	O96018	575 aa		28.01	■■■□□ 2.07
PRKCH-219	ENST00000555906	AXIN2	Q9Y2T1	843 aa		28.01	■■■□□ 2.07
PRKCH-219	ENST00000555906	EDC4	Q6P2E9	1401 aa	Known RBP	27.99	■■■□□ 2.07
PRKCH-219	ENST00000555906	SOX12	O15370	315 aa		27.97	■■■□□ 2.07
PRKCH-219	ENST00000555906	R3HDM1	Q15032	1099 aa	Known RBP	27.97	■■■□□ 2.07
PRKCH-219	ENST00000555906	CDCA7	Q9BWT1	371 aa	Predicted RBP	27.96	■■■□□ 2.07
PRKCH-219	ENST00000555906	DDB1	Q16531	1140 aa		27.95	■■■□□ 2.06
PRKCH-219	ENST00000555906	PUS7	Q96PZ0	661 aa	Known RBP	27.95	■■■□□ 2.06
PRKCH-219	ENST00000555906	BCL9	O00512	1426 aa		27.94	■■■□□ 2.06
PRKCH-219	ENST00000555906	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	27.94	■■■□□ 2.06
PRKCH-219	ENST00000555906	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	27.94	■■■□□ 2.06
PRKCH-219	ENST00000555906	CARD10	Q9BWT7	1032 aa		27.94	■■■□□ 2.06
PRKCH-219	ENST00000555906		A0A1W2PP64	1363 aa		27.94	■■■□□ 2.06
PRKCH-219	ENST00000555906	NINL	Q9Y2I6	1382 aa		27.94	■■■□□ 2.06
PRKCH-219	ENST00000555906	TMC1	Q8TDI8	760 aa		27.93	■■■□□ 2.06
PRKCH-219	ENST00000555906	CCDC7	Q96M83	1385 aa		27.93	■■■□□ 2.06
PRKCH-219	ENST00000555906	CSB-PGBD3	P0DP91	1061 aa		27.91	■■■□□ 2.06
PRKCH-219	ENST00000555906	NME9	Q86XW9	330 aa		27.91	■■■□□ 2.06
PRKCH-219	ENST00000555906	TNS2	Q63HR2	1409 aa		27.91	■■■□□ 2.06
PRKCH-219	ENST00000555906	TRIM26	Q12899	539 aa	Predicted RBP	27.9	■■■□□ 2.06
PRKCH-219	ENST00000555906	SLC12A5	Q9H2X9	1139 aa		27.9	■■■□□ 2.06
PRKCH-219	ENST00000555906	TERF2IP	Q9NYB0	399 aa		27.9	■■■□□ 2.06
PRKCH-219	ENST00000555906	FAM208A	Q9UK61	1670 aa	Known RBP	27.89	■■■□□ 2.06
PRKCH-219	ENST00000555906	TESK2	Q96S53	571 aa		27.88	■■■□□ 2.05
PRKCH-219	ENST00000555906	ERBB3	P21860	1342 aa		27.87	■■■□□ 2.05
PRKCH-219	ENST00000555906	NHS	Q6T4R5	1651 aa		27.84	■■■□□ 2.05
PRKCH-219	ENST00000555906	NBPF14	Q5TI25	921 aa		27.84	■■■□□ 2.05
PRKCH-219	ENST00000555906	MARCH10	Q8NA82	808 aa	Predicted RBP	27.84	■■■□□ 2.05
PRKCH-219	ENST00000555906	ST20-MTHFS	A0A0A6YYL1	179 aa		27.83	■■■□□ 2.05
PRKCH-219	ENST00000555906	SLC24A1	O60721	1099 aa		27.83	■■■□□ 2.05
PRKCH-219	ENST00000555906	BCL11B	Q9C0K0	894 aa	Predicted RBP	27.83	■■■□□ 2.05
PRKCH-219	ENST00000555906	PLSCR1	O15162	318 aa		27.81	■■■□□ 2.04
PRKCH-219	ENST00000555906	ANKRD36B	Q8N2N9	1353 aa		27.78	■■■□□ 2.04
PRKCH-219	ENST00000555906	USP47	Q96K76	1375 aa		27.78	■■■□□ 2.04
PRKCH-219	ENST00000555906	EXOC5	O00471	708 aa		27.78	■■■□□ 2.04
PRKCH-219	ENST00000555906	CASZ1	Q86V15	1759 aa		27.78	■■■□□ 2.04
PRKCH-219	ENST00000555906	ANKRD24	Q8TF21	1146 aa		27.76	■■■□□ 2.03
PRKCH-219	ENST00000555906	PTF1A	Q7RTS3	328 aa		27.75	■■■□□ 2.03
PRKCH-219	ENST00000555906	NLRP2	Q9NX02	1062 aa		27.75	■■■□□ 2.03
PRKCH-219	ENST00000555906	KIF20B	Q96Q89	1820 aa		27.74	■■■□□ 2.03
PRKCH-219	ENST00000555906	IL2RB	P14784	551 aa		27.72	■■■□□ 2.03
PRKCH-219	ENST00000555906	MYOM1	P52179	1685 aa		27.72	■■■□□ 2.03
PRKCH-219	ENST00000555906	BTAF1	O14981	1849 aa		27.71	■■■□□ 2.03
PRKCH-219	ENST00000555906	TMF1	P82094	1093 aa		27.7	■■■□□ 2.02
PRKCH-219	ENST00000555906	IP6K1	Q92551	441 aa		27.7	■■■□□ 2.02
PRKCH-219	ENST00000555906	COG3	Q96JB2	828 aa		27.7	■■■□□ 2.02
PRKCH-219	ENST00000555906	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.69	■■■□□ 2.02
PRKCH-219	ENST00000555906	RGPD2	P0DJD1	1756 aa		27.68	■■■□□ 2.02
PRKCH-219	ENST00000555906	RTL1	A6NKG5	1358 aa		27.68	■■■□□ 2.02
PRKCH-219	ENST00000555906	PAPPA	Q13219	1627 aa		27.67	■■■□□ 2.02
PRKCH-219	ENST00000555906	SHANK3	Q9BYB0	1731 aa		27.67	■■■□□ 2.02
PRKCH-219	ENST00000555906	MAP3K19	Q56UN5	1328 aa		27.67	■■■□□ 2.02
PRKCH-219	ENST00000555906	PROM2	Q8N271	834 aa		27.66	■■■□□ 2.02
PRKCH-219	ENST00000555906	SPON1	Q9HCB6	807 aa		27.64	■■■□□ 2.02
PRKCH-219	ENST00000555906	HOXC9	P31274	260 aa		27.63	■■■□□ 2.01
PRKCH-219	ENST00000555906	TXNRD1	Q16881	649 aa		27.63	■■■□□ 2.01
PRKCH-219	ENST00000555906	KAT6B	Q8WYB5	2073 aa		27.63	■■■□□ 2.01
PRKCH-219	ENST00000555906	DOT1L	Q8TEK3	1739 aa		27.62	■■■□□ 2.01
PRKCH-219	ENST00000555906	KCNQ2	O43526	872 aa		27.62	■■■□□ 2.01
PRKCH-219	ENST00000555906	CDCA8	Q53HL2	280 aa		27.62	■■■□□ 2.01
PRKCH-219	ENST00000555906	CLSPN	Q9HAW4	1339 aa		27.61	■■■□□ 2.01
PRKCH-219	ENST00000555906	ACSBG1	Q96GR2	724 aa		27.6	■■■□□ 2.01
PRKCH-219	ENST00000555906	TIMELESS	Q9UNS1	1208 aa		27.6	■■■□□ 2.01
PRKCH-219	ENST00000555906	AMPH	P49418	695 aa		27.59	■■■□□ 2.01
PRKCH-219	ENST00000555906	LTV1	Q96GA3	475 aa	Predicted RBP	27.59	■■■□□ 2.01
PRKCH-219	ENST00000555906	FYB1	O15117	783 aa		27.57	■■■□□ 2
PRKCH-219	ENST00000555906	STK32B	Q9NY57	414 aa		27.57	■■■□□ 2
PRKCH-219	ENST00000555906	PPP1R1B	Q9UD71	204 aa	Predicted RBP	27.57	■■■□□ 2
PRKCH-219	ENST00000555906	MEGF6	O75095	1541 aa		27.57	■■■□□ 2
PRKCH-219	ENST00000555906	GGNBP2	Q9H3C7	697 aa		27.55	■■■□□ 2
PRKCH-219	ENST00000555906	SMG6	Q86US8	1419 aa	Known RBP	27.55	■■■□□ 2
PRKCH-219	ENST00000555906	QSER1	Q2KHR3	1735 aa		27.55	■■■□□ 2
PRKCH-219	ENST00000555906	ANKRD26	Q9UPS8	1709 aa		27.55	■■■□□ 2
PRKCH-219	ENST00000555906	FBLN1	P23142	703 aa		27.54	■■■□□ 2
PRKCH-219	ENST00000555906	SLC15A2	Q16348	729 aa		27.54	■■■□□ 2
PRKCH-219	ENST00000555906	KIF24	Q5T7B8	1368 aa		27.52	■■■□□ 2
PRKCH-219	ENST00000555906	RRS1	Q15050	365 aa	Known RBP	27.52	■■■□□ 2
PRKCH-219	ENST00000555906	PDGFD	Q9GZP0	370 aa	Predicted RBP	27.52	■■■□□ 2
PRKCH-219	ENST00000555906	LY75	O60449	1722 aa		27.52	■■■□□ 2
PRKCH-219	ENST00000555906	NSD3	Q9BZ95	1437 aa		27.51	■■□□□ 1.99
PRKCH-219	ENST00000555906	FLT4	P35916	1363 aa		27.5	■■□□□ 1.99
PRKCH-219	ENST00000555906	DDX54	Q8TDD1	881 aa	Known RBP	27.49	■■□□□ 1.99
PRKCH-219	ENST00000555906	INSR	P06213	1382 aa		27.48	■■□□□ 1.99
PRKCH-219	ENST00000555906	TUBGCP6	Q96RT7	1819 aa		27.47	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms