RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 AXIN2Q9Y2T1 843 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 ABCC6O95255 1503 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 OVOS2A0A0J9YW53 1432 aa13.22□□□□□ -0.29
VIPAS39-207ENST00000555854 OVOS2Q6IE36 1432 aa13.22□□□□□ -0.29
VIPAS39-207ENST00000555854 ARHGEF25Q86VW2 580 aa13.22□□□□□ -0.29
VIPAS39-207ENST00000555854 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
VIPAS39-207ENST00000555854 SLC12A5Q9H2X9 1139 aa13.22□□□□□ -0.29
VIPAS39-207ENST00000555854 EDC4Q6P2E9 1401 aaKnown RBP13.22□□□□□ -0.29
VIPAS39-207ENST00000555854 ST20-MTHFSA0A0A6YYL1 179 aa13.21□□□□□ -0.29
VIPAS39-207ENST00000555854 NME9Q86XW9 330 aa13.21□□□□□ -0.29
VIPAS39-207ENST00000555854 TCP11L2Q8N4U5 519 aa13.21□□□□□ -0.29
VIPAS39-207ENST00000555854 USP47Q96K76 1375 aa13.2□□□□□ -0.3
VIPAS39-207ENST00000555854 ZBTB7CA1YPR0 619 aa13.2□□□□□ -0.3
VIPAS39-207ENST00000555854 SOX12O15370 315 aa13.2□□□□□ -0.3
VIPAS39-207ENST00000555854 LTN1O94822 1766 aa13.2□□□□□ -0.3
VIPAS39-207ENST00000555854 EVA1CP58658 441 aa13.19□□□□□ -0.3
VIPAS39-207ENST00000555854 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.19□□□□□ -0.3
VIPAS39-207ENST00000555854 RREB1Q92766 1687 aa13.18□□□□□ -0.3
VIPAS39-207ENST00000555854 WDR17Q8IZU2 1322 aa13.18□□□□□ -0.3
VIPAS39-207ENST00000555854 TMC1Q8TDI8 760 aa13.18□□□□□ -0.3
VIPAS39-207ENST00000555854 PUS7Q96PZ0 661 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-207ENST00000555854 THRAP3Q9Y2W1 955 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-207ENST00000555854 MYOM1P52179 1685 aa13.18□□□□□ -0.3
VIPAS39-207ENST00000555854 KCNH5Q8NCM2 988 aa13.17□□□□□ -0.3
VIPAS39-207ENST00000555854 NINLQ9Y2I6 1382 aa13.17□□□□□ -0.3
VIPAS39-207ENST00000555854 NUP188Q5SRE5 1749 aa13.16□□□□□ -0.3
VIPAS39-207ENST00000555854 BAG6P46379 1132 aa13.16□□□□□ -0.3
VIPAS39-207ENST00000555854 EN1Q05925 392 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-207ENST00000555854 C1QBPQ07021 282 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-207ENST00000555854 SF3B2Q13435 895 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-207ENST00000555854 TRIM37O94972 964 aa13.15□□□□□ -0.3
VIPAS39-207ENST00000555854 SBF2Q86WG5 1849 aa13.15□□□□□ -0.3
VIPAS39-207ENST00000555854 OVOS2A0A0G2JMS6 1433 aa13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 LRP5O75197 1615 aa13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 NPM3O75607 178 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 FAM196AQ6ZSG2 479 aa13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 TOM1L2Q6ZVM7 507 aa13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 HDGFL2Q7Z4V5 671 aaPredicted RBP13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 ANKRD36BQ8N2N9 1353 aa13.14□□□□□ -0.31
VIPAS39-207ENST00000555854 ERBB3P21860 1342 aa13.13□□□□□ -0.31
VIPAS39-207ENST00000555854 EZH2Q15910 746 aaKnown RBP13.13□□□□□ -0.31
VIPAS39-207ENST00000555854 NCBP3Q53F19 620 aaKnown RBP13.13□□□□□ -0.31
VIPAS39-207ENST00000555854 CAMKK2Q96RR4 588 aa13.13□□□□□ -0.31
VIPAS39-207ENST00000555854 TNS2Q63HR2 1409 aa13.13□□□□□ -0.31
VIPAS39-207ENST00000555854 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
VIPAS39-207ENST00000555854 PDE3BQ13370 1112 aa13.12□□□□□ -0.31
VIPAS39-207ENST00000555854 CARD10Q9BWT7 1032 aa13.12□□□□□ -0.31
VIPAS39-207ENST00000555854 TERF2IPQ9NYB0 399 aa13.12□□□□□ -0.31
VIPAS39-207ENST00000555854 RGPD3A6NKT7 1758 aaPredicted RBP13.12□□□□□ -0.31
VIPAS39-207ENST00000555854 RGPD4Q7Z3J3 1758 aa13.12□□□□□ -0.31
VIPAS39-207ENST00000555854 PSDA5PKW4 1024 aaPredicted RBP13.11□□□□□ -0.31
VIPAS39-207ENST00000555854 PTF1AQ7RTS3 328 aa13.11□□□□□ -0.31
VIPAS39-207ENST00000555854 PCGF6Q9BYE7 350 aa13.11□□□□□ -0.31
VIPAS39-207ENST00000555854 BCL9O00512 1426 aa13.11□□□□□ -0.31
VIPAS39-207ENST00000555854 FAM208AQ9UK61 1670 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-207ENST00000555854 CCDC7Q96M83 1385 aa13.1□□□□□ -0.31
VIPAS39-207ENST00000555854 MARCH10Q8NA82 808 aaPredicted RBP13.1□□□□□ -0.31
VIPAS39-207ENST00000555854 PARD3Q8TEW0 1356 aa13.09□□□□□ -0.31
VIPAS39-207ENST00000555854 KIF20BQ96Q89 1820 aa13.09□□□□□ -0.31
VIPAS39-207ENST00000555854 APBA3O96018 575 aa13.09□□□□□ -0.31
VIPAS39-207ENST00000555854 FBLN1P23142 703 aa13.09□□□□□ -0.31
VIPAS39-207ENST00000555854 DDB1Q16531 1140 aa13.09□□□□□ -0.31
VIPAS39-207ENST00000555854 CSB-PGBD3P0DP91 1061 aa13.08□□□□□ -0.32
VIPAS39-207ENST00000555854 TMF1P82094 1093 aa13.08□□□□□ -0.32
VIPAS39-207ENST00000555854 ANKRD24Q8TF21 1146 aa13.08□□□□□ -0.32
VIPAS39-207ENST00000555854 TIMELESSQ9UNS1 1208 aa13.08□□□□□ -0.32
VIPAS39-207ENST00000555854 MAP3K19Q56UN5 1328 aa13.08□□□□□ -0.32
VIPAS39-207ENST00000555854 NHSQ6T4R5 1651 aa13.07□□□□□ -0.32
VIPAS39-207ENST00000555854 SHANK3Q9BYB0 1731 aa13.07□□□□□ -0.32
VIPAS39-207ENST00000555854 RGPD2P0DJD1 1756 aa13.07□□□□□ -0.32
VIPAS39-207ENST00000555854 R3HDM1Q15032 1099 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-207ENST00000555854 CDCA7Q9BWT1 371 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-207ENST00000555854 NSD3Q9BZ95 1437 aa13.05□□□□□ -0.32
VIPAS39-207ENST00000555854 FYB1O15117 783 aa13.05□□□□□ -0.32
VIPAS39-207ENST00000555854 SLC24A1O60721 1099 aa13.05□□□□□ -0.32
VIPAS39-207ENST00000555854 IP6K1Q92551 441 aa13.05□□□□□ -0.32
VIPAS39-207ENST00000555854 RTL1A6NKG5 1358 aa13.05□□□□□ -0.32
VIPAS39-207ENST00000555854 MEGF6O75095 1541 aa13.04□□□□□ -0.32
VIPAS39-207ENST00000555854 HOXC9P31274 260 aa13.04□□□□□ -0.32
VIPAS39-207ENST00000555854 COG3Q96JB2 828 aa13.04□□□□□ -0.32
VIPAS39-207ENST00000555854 CARD14Q9BXL6 1004 aa13.04□□□□□ -0.32
VIPAS39-207ENST00000555854 GGNBP2Q9H3C7 697 aa13.04□□□□□ -0.32
VIPAS39-207ENST00000555854 NLRP2Q9NX02 1062 aa13.04□□□□□ -0.32
VIPAS39-207ENST00000555854 ANKRD26Q9UPS8 1709 aa13.03□□□□□ -0.32
VIPAS39-207ENST00000555854 ANO8Q9HCE9 1232 aaPredicted RBP13.03□□□□□ -0.32
VIPAS39-207ENST00000555854 PAPPAQ13219 1627 aa13.02□□□□□ -0.32
VIPAS39-207ENST00000555854 IL2RBP14784 551 aa13.02□□□□□ -0.33
VIPAS39-207ENST00000555854 RRS1Q15050 365 aaKnown RBP13.02□□□□□ -0.33
VIPAS39-207ENST00000555854 BCL11BQ9C0K0 894 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-207ENST00000555854 CASZ1Q86V15 1759 aa13.02□□□□□ -0.33
VIPAS39-207ENST00000555854 C11orf95C9JLR9 678 aaPredicted RBP13.01□□□□□ -0.33
VIPAS39-207ENST00000555854 PROM2Q8N271 834 aa13.01□□□□□ -0.33
VIPAS39-207ENST00000555854 LTV1Q96GA3 475 aaPredicted RBP13.01□□□□□ -0.33
VIPAS39-207ENST00000555854 BTAF1O14981 1849 aa13□□□□□ -0.33
VIPAS39-207ENST00000555854 EXOC5O00471 708 aa13□□□□□ -0.33
VIPAS39-207ENST00000555854 PLSCR1O15162 318 aa13□□□□□ -0.33
VIPAS39-207ENST00000555854 KCNQ2O43526 872 aa13□□□□□ -0.33
VIPAS39-207ENST00000555854 CDCA8Q53HL2 280 aa13□□□□□ -0.33
VIPAS39-207ENST00000555854 DOT1LQ8TEK3 1739 aa12.99□□□□□ -0.33
VIPAS39-207ENST00000555854 HSPA5P11021 654 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms