RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 COL18A1P39060 1754 aa14.94□□□□□ -0.02
SHMT2-220ENST00000555634 DIAPH1O60610 1272 aaKnown RBP14.94□□□□□ -0.02
SHMT2-220ENST00000555634 NEFMP07197 916 aa14.94□□□□□ -0.02
SHMT2-220ENST00000555634 PRDM11Q9NQV5 511 aa14.94□□□□□ -0.02
SHMT2-220ENST00000555634 EMILIN1Q9Y6C2 1016 aa14.94□□□□□ -0.02
SHMT2-220ENST00000555634 RGPD1P0DJD0 1748 aa14.94□□□□□ -0.02
SHMT2-220ENST00000555634 SPATA31A6Q5VVP1 1343 aa14.93□□□□□ -0.02
SHMT2-220ENST00000555634 PNNQ9H307 717 aaKnown RBP14.93□□□□□ -0.02
SHMT2-220ENST00000555634 INSRP06213 1382 aa14.93□□□□□ -0.02
SHMT2-220ENST00000555634 KIAA0232Q92628 1395 aa14.92□□□□□ -0.02
SHMT2-220ENST00000555634 CAMTA1Q9Y6Y1 1673 aa14.92□□□□□ -0.02
SHMT2-220ENST00000555634 RGPD2P0DJD1 1756 aa14.92□□□□□ -0.02
SHMT2-220ENST00000555634 PARP4Q9UKK3 1724 aaKnown RBP14.92□□□□□ -0.02
SHMT2-220ENST00000555634 HOXC9P31274 260 aa14.91□□□□□ -0.02
SHMT2-220ENST00000555634 ZC3H6P61129 1189 aaKnown RBP14.91□□□□□ -0.02
SHMT2-220ENST00000555634 CABLES1Q8TDN4 633 aa14.91□□□□□ -0.02
SHMT2-220ENST00000555634 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.91□□□□□ -0.02
SHMT2-220ENST00000555634 U2SURPO15042 1029 aaKnown RBP14.9□□□□□ -0.02
SHMT2-220ENST00000555634 ARHGEF25Q86VW2 580 aa14.9□□□□□ -0.02
SHMT2-220ENST00000555634 FAM9BQ8IZU0 186 aa14.9□□□□□ -0.02
SHMT2-220ENST00000555634 IP6K1Q92551 441 aa14.9□□□□□ -0.02
SHMT2-220ENST00000555634 WNK3Q9BYP7 1800 aa14.89□□□□□ -0.03
SHMT2-220ENST00000555634 NRAPQ86VF7 1730 aa14.89□□□□□ -0.03
SHMT2-220ENST00000555634 U2AF1L5P0DN76 240 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-220ENST00000555634 CSB-PGBD3P0DP91 1061 aa14.88□□□□□ -0.03
SHMT2-220ENST00000555634 HSPA1LP34931 641 aa14.88□□□□□ -0.03
SHMT2-220ENST00000555634 U2AF1Q01081 240 aaKnown RBP eCLIP14.88□□□□□ -0.03
SHMT2-220ENST00000555634 MEX3CQ5U5Q3 659 aaKnown RBP14.88□□□□□ -0.03
SHMT2-220ENST00000555634 MAPK8IP3Q9UPT6 1336 aa14.88□□□□□ -0.03
SHMT2-220ENST00000555634 NUTM2BA6NNL0 878 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-220ENST00000555634 NUTM2EB1AL46 878 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-220ENST00000555634 NUTM2AQ8IVF1 878 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-220ENST00000555634 COL5A2P05997 1499 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-220ENST00000555634 FBLN1P23142 703 aa14.85□□□□□ -0.03
SHMT2-220ENST00000555634 HSP90AB2PQ58FF8 381 aa14.85□□□□□ -0.03
SHMT2-220ENST00000555634 PNISRQ8TF01 805 aaKnown RBP14.85□□□□□ -0.03
SHMT2-220ENST00000555634 LTV1Q96GA3 475 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-220ENST00000555634 ADAMTS2O95450 1211 aa14.84□□□□□ -0.03
SHMT2-220ENST00000555634 EVA1CP58658 441 aa14.84□□□□□ -0.03
SHMT2-220ENST00000555634 EIF4A2Q14240 407 aaKnown RBP14.84□□□□□ -0.03
SHMT2-220ENST00000555634 CHRNA2Q15822 529 aa14.84□□□□□ -0.03
SHMT2-220ENST00000555634 CCDC184Q52MB2 194 aa14.84□□□□□ -0.03
SHMT2-220ENST00000555634 ANKRD24Q8TF21 1146 aa14.84□□□□□ -0.03
SHMT2-220ENST00000555634 ERBB3P21860 1342 aa14.84□□□□□ -0.03
SHMT2-220ENST00000555634 DLG5Q8TDM6 1919 aa14.83□□□□□ -0.04
SHMT2-220ENST00000555634 VIRMAQ69YN4 1812 aaKnown RBP14.82□□□□□ -0.04
SHMT2-220ENST00000555634 IL13P35225 146 aa14.82□□□□□ -0.04
SHMT2-220ENST00000555634 YTHDC1Q96MU7 727 aaKnown RBP14.81□□□□□ -0.04
SHMT2-220ENST00000555634 WDR17Q8IZU2 1322 aa14.81□□□□□ -0.04
SHMT2-220ENST00000555634 IGSF1Q8N6C5 1336 aa14.81□□□□□ -0.04
SHMT2-220ENST00000555634 PLEKHG2Q9H7P9 1386 aa14.81□□□□□ -0.04
SHMT2-220ENST00000555634 CRB1P82279 1406 aa14.81□□□□□ -0.04
SHMT2-220ENST00000555634 LRP6O75581 1613 aa14.81□□□□□ -0.04
SHMT2-220ENST00000555634 PKD1L3Q7Z443 1732 aa14.8□□□□□ -0.04
SHMT2-220ENST00000555634 FCHSD2O94868 740 aa14.8□□□□□ -0.04
SHMT2-220ENST00000555634 NLRP2Q9NX02 1062 aa14.8□□□□□ -0.04
SHMT2-220ENST00000555634 BTG4Q9NY30 223 aa14.8□□□□□ -0.04
SHMT2-220ENST00000555634 ADAMTS8Q9UP79 889 aa14.8□□□□□ -0.04
SHMT2-220ENST00000555634 KDRP35968 1356 aa14.79□□□□□ -0.04
SHMT2-220ENST00000555634 TOM1L2Q6ZVM7 507 aa14.79□□□□□ -0.04
SHMT2-220ENST00000555634 RUNDC1Q96C34 613 aa14.79□□□□□ -0.04
SHMT2-220ENST00000555634 C8orf37Q96NL8 207 aa14.79□□□□□ -0.04
SHMT2-220ENST00000555634 STRN4Q9NRL3 753 aa14.79□□□□□ -0.04
SHMT2-220ENST00000555634 SLIT2O94813 1529 aa14.78□□□□□ -0.04
SHMT2-220ENST00000555634 HMOX1P09601 288 aa14.78□□□□□ -0.04
SHMT2-220ENST00000555634 HNRNPUQ00839 825 aaKnown RBP eCLIP14.78□□□□□ -0.04
SHMT2-220ENST00000555634 SULT6B1Q6IMI4 303 aa14.78□□□□□ -0.04
SHMT2-220ENST00000555634 NGEFQ8N5V2 710 aa14.78□□□□□ -0.04
SHMT2-220ENST00000555634 NGLY1Q96IV0 654 aa14.78□□□□□ -0.04
SHMT2-220ENST00000555634 NCAPD2Q15021 1401 aa14.77□□□□□ -0.04
SHMT2-220ENST00000555634 PRKAR2BP31323 418 aa14.77□□□□□ -0.05
SHMT2-220ENST00000555634 RAPGEF4Q8WZA2 1011 aa14.77□□□□□ -0.05
SHMT2-220ENST00000555634 FAM83GA6ND36 823 aa14.76□□□□□ -0.05
SHMT2-220ENST00000555634 CCDC146Q8IYE0 955 aa14.76□□□□□ -0.05
SHMT2-220ENST00000555634 EYA1Q99502 592 aa14.76□□□□□ -0.05
SHMT2-220ENST00000555634 AXIN2Q9Y2T1 843 aa14.76□□□□□ -0.05
SHMT2-220ENST00000555634 LMOD3Q0VAK6 560 aa14.75□□□□□ -0.05
SHMT2-220ENST00000555634 RSPH6AQ9H0K4 717 aa14.75□□□□□ -0.05
SHMT2-220ENST00000555634 CCDC9Q9Y3X0 531 aaKnown RBP14.75□□□□□ -0.05
SHMT2-220ENST00000555634 TATP17735 454 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-220ENST00000555634 NBPF6Q5VWK0 638 aa14.73□□□□□ -0.05
SHMT2-220ENST00000555634 USHBP1Q8N6Y0 703 aa14.73□□□□□ -0.05
SHMT2-220ENST00000555634 GAS2L2Q8NHY3 880 aa14.73□□□□□ -0.05
SHMT2-220ENST00000555634 NBPF4Q96M43 638 aa14.73□□□□□ -0.05
SHMT2-220ENST00000555634 CARD10Q9BWT7 1032 aa14.73□□□□□ -0.05
SHMT2-220ENST00000555634 AMOTQ4VCS5 1084 aa14.72□□□□□ -0.05
SHMT2-220ENST00000555634 UNC5CLQ8IV45 518 aa14.72□□□□□ -0.05
SHMT2-220ENST00000555634 USP21Q9UK80 565 aa14.72□□□□□ -0.05
SHMT2-220ENST00000555634 LRRC37A3O60309 1634 aa14.72□□□□□ -0.05
SHMT2-220ENST00000555634 SHANK3Q9BYB0 1731 aa14.72□□□□□ -0.05
SHMT2-220ENST00000555634 ZBED9Q6R2W3 1325 aa14.71□□□□□ -0.05
SHMT2-220ENST00000555634 C1orf141Q5JVX7 400 aa14.71□□□□□ -0.05
SHMT2-220ENST00000555634 LARP1Q6PKG0 1096 aaKnown RBP14.71□□□□□ -0.05
SHMT2-220ENST00000555634 AEBP1Q8IUX7 1158 aa14.71□□□□□ -0.05
SHMT2-220ENST00000555634 CDCA7Q9BWT1 371 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-220ENST00000555634 SPG7Q9UQ90 795 aa14.71□□□□□ -0.05
SHMT2-220ENST00000555634 THRAP3Q9Y2W1 955 aaKnown RBP14.71□□□□□ -0.05
SHMT2-220ENST00000555634 SCN11AQ9UI33 1791 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 AFF2P51816 1311 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 OVOS2A0A0G2JMS6 1433 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms