RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 RABEP1Q15276 862 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 EXOC6BQ9Y2D4 811 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 NCOA3Q9Y6Q9 1424 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 CD109Q6YHK3 1445 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 NPHP1O15259 732 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 DIAPH1O60610 1272 aaKnown RBP10.85□□□□□ -0.67
SYNE2-217ENST00000555022 ZNF445P59923 1031 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 LRSAM1Q6UWE0 723 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 ZRANB1Q9UGI0 708 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 PALD1Q9ULE6 856 aa10.85□□□□□ -0.67
SYNE2-217ENST00000555022 NAA30Q147X3 362 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-217ENST00000555022 TRAPPC8Q9Y2L5 1435 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 NUTM2FA1L443 756 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 F6X3S4 739 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 AAMPQ13685 434 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 TAOK2Q9UL54 1235 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 ZNF710Q8N1W2 664 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 USP26Q9BXU7 913 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 SHANK2Q9UPX8 1470 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 NOS1P29475 1434 aa10.84□□□□□ -0.67
SYNE2-217ENST00000555022 CPA1P15085 419 aa10.83□□□□□ -0.67
SYNE2-217ENST00000555022 TWISTNBQ3B726 338 aaPredicted RBP10.83□□□□□ -0.67
SYNE2-217ENST00000555022 EFCAB2Q5VUJ9 269 aa10.83□□□□□ -0.67
SYNE2-217ENST00000555022 ZNF592Q92610 1267 aa10.83□□□□□ -0.67
SYNE2-217ENST00000555022 PHF23Q9BUL5 403 aaPredicted RBP10.83□□□□□ -0.67
SYNE2-217ENST00000555022 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.83□□□□□ -0.67
SYNE2-217ENST00000555022 V9GYY5 206 aaPredicted RBP10.83□□□□□ -0.67
SYNE2-217ENST00000555022 CFAP65Q6ZU64 1925 aaKnown RBP10.83□□□□□ -0.68
SYNE2-217ENST00000555022 ADCY5O95622 1261 aa10.83□□□□□ -0.68
SYNE2-217ENST00000555022 GIMAP6Q6P9H5 292 aa10.83□□□□□ -0.68
SYNE2-217ENST00000555022 TMX3Q96JJ7 454 aa10.83□□□□□ -0.68
SYNE2-217ENST00000555022 CGNQ9P2M7 1197 aaKnown RBP10.83□□□□□ -0.68
SYNE2-217ENST00000555022 DYNC1I1O14576 645 aa10.83□□□□□ -0.68
SYNE2-217ENST00000555022 EMILIN1Q9Y6C2 1016 aa10.83□□□□□ -0.68
SYNE2-217ENST00000555022 TTC22Q5TAA0 569 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 ZNF771Q7L3S4 317 aaPredicted RBP10.82□□□□□ -0.68
SYNE2-217ENST00000555022 FBXW7Q969H0 707 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 MEIS3Q99687 375 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 MBIPQ9NS73 344 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 CNPY2Q9Y2B0 182 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 CLASP1Q7Z460 1538 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 PTPRTO14522 1441 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 ZNF500O60304 480 aaPredicted RBP10.82□□□□□ -0.68
SYNE2-217ENST00000555022 INTS3Q68E01 1043 aaKnown RBP10.82□□□□□ -0.68
SYNE2-217ENST00000555022 NGEFQ8N5V2 710 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 BBXQ8WY36 941 aaPredicted RBP10.82□□□□□ -0.68
SYNE2-217ENST00000555022 PTMSP20962 102 aa10.82□□□□□ -0.68
SYNE2-217ENST00000555022 RRS1Q15050 365 aaKnown RBP10.82□□□□□ -0.68
SYNE2-217ENST00000555022 NOLC1Q14978 699 aaKnown RBP eCLIP10.81□□□□□ -0.68
SYNE2-217ENST00000555022 CSPP1Q1MSJ5 1256 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 MRPL50Q8N5N7 158 aaKnown RBP10.81□□□□□ -0.68
SYNE2-217ENST00000555022 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.81□□□□□ -0.68
SYNE2-217ENST00000555022 CCDC94Q9BW85 323 aaPredicted RBP10.81□□□□□ -0.68
SYNE2-217ENST00000555022 NUP160Q12769 1436 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 VAMP4O75379 141 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 CAMK4Q16566 473 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 CASC1Q6TDU7 716 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 USP48Q86UV5 1035 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 GCC1Q96CN9 775 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 PLEKHF1Q96S99 279 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 SYNJ2O15056 1496 aa10.81□□□□□ -0.68
SYNE2-217ENST00000555022 RSPH4AQ5TD94 716 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 DRC7Q8IY82 874 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 PLCD3Q8N3E9 789 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 PDLIM2Q96JY6 352 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 BCL2L12Q9HB09 334 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 PYCARDQ9ULZ3 195 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 EIF2AK4Q9P2K8 1649 aaKnown RBP10.8□□□□□ -0.68
SYNE2-217ENST00000555022 IL1RAPL2Q9NP60 686 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 ERICH4A6NGS2 130 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 MCM10Q7L590 875 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 MAP7D2Q96T17 732 aa10.8□□□□□ -0.68
SYNE2-217ENST00000555022 ZSCAN20P17040 1043 aaPredicted RBP10.79□□□□□ -0.68
SYNE2-217ENST00000555022 FOSBP53539 338 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 FERMT3Q86UX7 667 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 FAM173BQ6P4H8 233 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 SMAP1Q8IYB5 467 aaPredicted RBP10.79□□□□□ -0.68
SYNE2-217ENST00000555022 PDCL2Q8N4E4 241 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 C16orf45Q96MC5 204 aaPredicted RBP10.79□□□□□ -0.68
SYNE2-217ENST00000555022 CABP1Q9NZU7 370 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 ATP10AO60312 1499 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 FYB1O15117 783 aa10.79□□□□□ -0.68
SYNE2-217ENST00000555022 NPC1L1Q9UHC9 1359 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 NCKAP5LQ9HCH0 1330 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 RIOK3O14730 519 aaKnown RBP10.78□□□□□ -0.68
SYNE2-217ENST00000555022 KIF3AQ9Y496 699 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 MYOM1P52179 1685 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 MADDQ8WXG6 1647 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 IQSEC2Q5JU85 1478 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 ZNF518AQ6AHZ1 1483 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 SCAPERQ9BY12 1400 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 EVC2Q86UK5 1308 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 PPFIA3O75145 1194 aa10.78□□□□□ -0.68
SYNE2-217ENST00000555022 KDM5AP29375 1690 aaKnown RBP10.78□□□□□ -0.68
SYNE2-217ENST00000555022 VPS37CA5D8V6 355 aaPredicted RBP10.77□□□□□ -0.68
SYNE2-217ENST00000555022 SYTL4Q96C24 671 aaPredicted RBP10.77□□□□□ -0.68
SYNE2-217ENST00000555022 KANK1Q14678 1352 aa10.77□□□□□ -0.69
SYNE2-217ENST00000555022 LRMPQ12912 555 aa10.77□□□□□ -0.69
SYNE2-217ENST00000555022 PRAM1Q96QH2 718 aa10.77□□□□□ -0.69
SYNE2-217ENST00000555022 CYP2E1P05181 493 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms