RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FAM182BQ5T319 152 aa16.14■□□□□ 0.17
CCDC88C-208ENST00000554165 COL5A2P05997 1499 aaPredicted RBP16.14■□□□□ 0.17
CCDC88C-208ENST00000554165 MYOM1P52179 1685 aa16.14■□□□□ 0.17
CCDC88C-208ENST00000554165 OVOS2A0A0J9YW53 1432 aa16.13■□□□□ 0.17
CCDC88C-208ENST00000554165 OVOS2Q6IE36 1432 aa16.13■□□□□ 0.17
CCDC88C-208ENST00000554165 FYB1O15117 783 aa16.12■□□□□ 0.17
CCDC88C-208ENST00000554165 GGNBP2Q9H3C7 697 aa16.12■□□□□ 0.17
CCDC88C-208ENST00000554165 RGPD5Q99666 1765 aa16.11■□□□□ 0.17
CCDC88C-208ENST00000554165 KRT27Q7Z3Y8 459 aa16.11■□□□□ 0.17
CCDC88C-208ENST00000554165 EP400Q96L91 3159 aa16.11■□□□□ 0.17
CCDC88C-208ENST00000554165 USP54Q70EL1 1684 aa16.11■□□□□ 0.17
CCDC88C-208ENST00000554165 TCP11L2Q8N4U5 519 aa16.09■□□□□ 0.17
CCDC88C-208ENST00000554165 COG3Q96JB2 828 aa16.09■□□□□ 0.17
CCDC88C-208ENST00000554165 NSD3Q9BZ95 1437 aa16.09■□□□□ 0.17
CCDC88C-208ENST00000554165 THSD7AQ9UPZ6 1657 aa16.08■□□□□ 0.17
CCDC88C-208ENST00000554165 TOM1L2Q6ZVM7 507 aa16.08■□□□□ 0.16
CCDC88C-208ENST00000554165 CRB1P82279 1406 aa16.08■□□□□ 0.16
CCDC88C-208ENST00000554165 CSB-PGBD3P0DP91 1061 aa16.07■□□□□ 0.16
CCDC88C-208ENST00000554165 BARGINQ6ZT62 677 aa16.07■□□□□ 0.16
CCDC88C-208ENST00000554165 WDR17Q8IZU2 1322 aa16.07■□□□□ 0.16
CCDC88C-208ENST00000554165 MAP3K19Q56UN5 1328 aa16.06■□□□□ 0.16
CCDC88C-208ENST00000554165 LTN1O94822 1766 aa16.05■□□□□ 0.16
CCDC88C-208ENST00000554165 RRS1Q15050 365 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-208ENST00000554165 PANK3Q9H999 370 aa16.05■□□□□ 0.16
CCDC88C-208ENST00000554165 LTV1Q96GA3 475 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-208ENST00000554165 KIF7Q2M1P5 1343 aa16.03■□□□□ 0.16
CCDC88C-208ENST00000554165 ANKRD24Q8TF21 1146 aa16.03■□□□□ 0.16
CCDC88C-208ENST00000554165 IP6K1Q92551 441 aa16.03■□□□□ 0.16
CCDC88C-208ENST00000554165 CARD10Q9BWT7 1032 aa16.03■□□□□ 0.16
CCDC88C-208ENST00000554165 THRAP3Q9Y2W1 955 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-208ENST00000554165 ERBB3P21860 1342 aa16.02■□□□□ 0.16
CCDC88C-208ENST00000554165 DEFB132Q7Z7B7 95 aa16.02■□□□□ 0.16
CCDC88C-208ENST00000554165 NLRP2Q9NX02 1062 aa16.02■□□□□ 0.16
CCDC88C-208ENST00000554165 KIF20BQ96Q89 1820 aa16.01■□□□□ 0.15
CCDC88C-208ENST00000554165 HOXC9P31274 260 aa16.01■□□□□ 0.15
CCDC88C-208ENST00000554165 AMPHP49418 695 aa16.01■□□□□ 0.15
CCDC88C-208ENST00000554165 PDE3BQ13370 1112 aa16■□□□□ 0.15
CCDC88C-208ENST00000554165 ABCC6O95255 1503 aa15.99■□□□□ 0.15
CCDC88C-208ENST00000554165 EMILIN1Q9Y6C2 1016 aa15.99■□□□□ 0.15
CCDC88C-208ENST00000554165 BLMP54132 1417 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-208ENST00000554165 CGNL1Q0VF96 1302 aa15.98■□□□□ 0.15
CCDC88C-208ENST00000554165 DISP2A7MBM2 1401 aa15.98■□□□□ 0.15
CCDC88C-208ENST00000554165 TNNT2P45379 298 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-208ENST00000554165 TRIM37O94972 964 aa15.97■□□□□ 0.15
CCDC88C-208ENST00000554165 HSP90AB2PQ58FF8 381 aa15.97■□□□□ 0.15
CCDC88C-208ENST00000554165 CCDC125Q86Z20 511 aa15.97■□□□□ 0.15
CCDC88C-208ENST00000554165 PEAK1Q9H792 1746 aa15.97■□□□□ 0.15
CCDC88C-208ENST00000554165 PARP4Q9UKK3 1724 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-208ENST00000554165 DDB1Q16531 1140 aa15.96■□□□□ 0.15
CCDC88C-208ENST00000554165 FAM196AQ6ZSG2 479 aa15.96■□□□□ 0.15
CCDC88C-208ENST00000554165 MARCH10Q8NA82 808 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-208ENST00000554165 LRRC37A3O60309 1634 aa15.96■□□□□ 0.15
CCDC88C-208ENST00000554165 WASHC2AQ641Q2 1341 aa15.95■□□□□ 0.14
CCDC88C-208ENST00000554165 PPM1GO15355 546 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-208ENST00000554165 PTF1AQ7RTS3 328 aa15.95■□□□□ 0.14
CCDC88C-208ENST00000554165 CCDC7Q96M83 1385 aa15.95■□□□□ 0.14
CCDC88C-208ENST00000554165 WNK3Q9BYP7 1800 aa15.94■□□□□ 0.14
CCDC88C-208ENST00000554165 SF3B2Q13435 895 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-208ENST00000554165 USHBP1Q8N6Y0 703 aa15.94■□□□□ 0.14
CCDC88C-208ENST00000554165 RGPD2P0DJD1 1756 aa15.94■□□□□ 0.14
CCDC88C-208ENST00000554165 RTL1A6NKG5 1358 aa15.93■□□□□ 0.14
CCDC88C-208ENST00000554165 NBPF6Q5VWK0 638 aa15.93■□□□□ 0.14
CCDC88C-208ENST00000554165 NBPF4Q96M43 638 aa15.93■□□□□ 0.14
CCDC88C-208ENST00000554165 POLKQ9UBT6 870 aa15.93■□□□□ 0.14
CCDC88C-208ENST00000554165 EXOC5O00471 708 aa15.92■□□□□ 0.14
CCDC88C-208ENST00000554165 IL2RBP14784 551 aa15.92■□□□□ 0.14
CCDC88C-208ENST00000554165 EN1Q05925 392 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-208ENST00000554165 CDCA7Q9BWT1 371 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-208ENST00000554165 FLT4P35916 1363 aa15.91■□□□□ 0.14
CCDC88C-208ENST00000554165 AMER1Q5JTC6 1135 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-208ENST00000554165 KNSTRNQ9Y448 316 aa15.91■□□□□ 0.14
CCDC88C-208ENST00000554165 INSRP06213 1382 aa15.9■□□□□ 0.14
CCDC88C-208ENST00000554165 PER1O15534 1290 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-208ENST00000554165 TNS1Q9HBL0 1735 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-208ENST00000554165 MAP2P11137 1827 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 OVOS2A0A0G2JMS6 1433 aa15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 APBA3O96018 575 aa15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 BAG6P46379 1132 aa15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 CNGB1Q14028 1251 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 MORC1Q86VD1 984 aa15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 FAM208AQ9UK61 1670 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-208ENST00000554165 ANKRD26Q9UPS8 1709 aa15.88■□□□□ 0.13
CCDC88C-208ENST00000554165 TNS2Q63HR2 1409 aa15.88■□□□□ 0.13
CCDC88C-208ENST00000554165 EZH2Q15910 746 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-208ENST00000554165 MEGF6O75095 1541 aa15.88■□□□□ 0.13
CCDC88C-208ENST00000554165 RGPD1P0DJD0 1748 aa15.88■□□□□ 0.13
CCDC88C-208ENST00000554165 DDX54Q8TDD1 881 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-208ENST00000554165 CAMKK2Q96RR4 588 aa15.87■□□□□ 0.13
CCDC88C-208ENST00000554165 KCNQ2O43526 872 aa15.86■□□□□ 0.13
CCDC88C-208ENST00000554165 ACSBG1Q96GR2 724 aa15.86■□□□□ 0.13
CCDC88C-208ENST00000554165 NSD2O96028 1365 aa15.86■□□□□ 0.13
CCDC88C-208ENST00000554165 KIF24Q5T7B8 1368 aa15.86■□□□□ 0.13
CCDC88C-208ENST00000554165 CC2D1BQ5T0F9 858 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-208ENST00000554165 SMG6Q86US8 1419 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-208ENST00000554165 SBF2Q86WG5 1849 aa15.84■□□□□ 0.13
CCDC88C-208ENST00000554165 EIF4A2Q14240 407 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-208ENST00000554165 EYA1Q99502 592 aa15.84■□□□□ 0.13
CCDC88C-208ENST00000554165 ZCRB1Q8TBF4 217 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-208ENST00000554165 BCL11BQ9C0K0 894 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-208ENST00000554165 BCL9O00512 1426 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms