RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 PER1O15534 1290 aaPredicted RBP8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 RAPGEF3O95398 923 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 PPP4CP60510 307 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 RALBP1Q15311 655 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 PPP1R18Q6NYC8 613 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 KIF13AQ9H1H9 1805 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 ADGRB3O60242 1522 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 SIGLEC1Q9BZZ2 1709 aa8.23□□□□□ -1.09
VIPAS39-204ENST00000553576 SETBP1Q9Y6X0 1596 aa8.22□□□□□ -1.09
VIPAS39-204ENST00000553576 TSPOAP1O95153 1857 aa8.22□□□□□ -1.09
VIPAS39-204ENST00000553576 SCAF11Q99590 1463 aaKnown RBP8.22□□□□□ -1.09
VIPAS39-204ENST00000553576 TMF1P82094 1093 aa8.22□□□□□ -1.09
VIPAS39-204ENST00000553576 AGLP35573 1532 aa8.22□□□□□ -1.09
VIPAS39-204ENST00000553576 GTPBP6O43824 516 aaPredicted RBP8.21□□□□□ -1.1
VIPAS39-204ENST00000553576 FAM69CQ0P6D2 419 aa8.21□□□□□ -1.1
VIPAS39-204ENST00000553576 ZNF775Q96BV0 537 aaPredicted RBP8.21□□□□□ -1.1
VIPAS39-204ENST00000553576 RBM33Q96EV2 1170 aaKnown RBP8.21□□□□□ -1.1
VIPAS39-204ENST00000553576 MTRQ99707 1265 aa8.21□□□□□ -1.1
VIPAS39-204ENST00000553576 MYO3AQ8NEV4 1616 aa8.21□□□□□ -1.1
VIPAS39-204ENST00000553576 UGGT1Q9NYU2 1555 aa8.2□□□□□ -1.1
VIPAS39-204ENST00000553576 CCDC184Q52MB2 194 aa8.2□□□□□ -1.1
VIPAS39-204ENST00000553576 CDCA8Q53HL2 280 aa8.2□□□□□ -1.1
VIPAS39-204ENST00000553576 GGT6Q6P531 493 aa8.2□□□□□ -1.1
VIPAS39-204ENST00000553576 TSKSQ9UJT2 592 aa8.2□□□□□ -1.1
VIPAS39-204ENST00000553576 PACS2Q86VP3 889 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 IL21Q9HBE4 155 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 MRS2Q9HD23 443 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 SLC52A1Q9NWF4 448 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 PDZRN3Q9UPQ7 1066 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 BRD4O60885 1362 aaPredicted RBP8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 DISP3Q9P2K9 1392 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 SBNO2Q9Y2G9 1366 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 ZFYVE9O95405 1425 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 YEATS2Q9ULM3 1422 aa8.19□□□□□ -1.1
VIPAS39-204ENST00000553576 SYNMO15061 1565 aa8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 PREX1Q8TCU6 1659 aa8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 MYO5BQ9ULV0 1848 aa8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 C14orf93Q9H972 538 aaKnown RBP8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 ADGRF5Q8IZF2 1346 aa8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 INSRP06213 1382 aa8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 EIF3AQ14152 1382 aaKnown RBP8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 PARD3Q8TEW0 1356 aa8.18□□□□□ -1.1
VIPAS39-204ENST00000553576 HNRNPUQ00839 825 aaKnown RBP eCLIP8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 SAMD7Q7Z3H4 446 aa8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 PNISRQ8TF01 805 aaKnown RBP8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 ZBED9Q6R2W3 1325 aa8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 MYBBP1AQ9BQG0 1328 aaKnown RBP8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 PIK3C2GO75747 1445 aa8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 KDM5AP29375 1690 aaKnown RBP8.17□□□□□ -1.1
VIPAS39-204ENST00000553576 LRPPRCP42704 1394 aaKnown RBP8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 CFAP70Q5T0N1 1121 aa8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 PUS7Q96PZ0 661 aaKnown RBP8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 POLR3GLQ9BT43 218 aa8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 RTN4Q9NQC3 1192 aaKnown RBP8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 NPC1L1Q9UHC9 1359 aa8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 SUPT16HQ9Y5B9 1047 aaKnown RBP8.16□□□□□ -1.1
VIPAS39-204ENST00000553576 MYOM1P52179 1685 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 TMEM131LA2VDJ0 1609 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 NEXMIFQ5QGS0 1516 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 DPYSL4O14531 572 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 CAMK2BQ13554 666 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 NLRP13Q86W25 1043 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 ZNF516Q92618 1163 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 DDX12PQ92771 950 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 PANK3Q9H999 370 aa8.15□□□□□ -1.1
VIPAS39-204ENST00000553576 ADGRB1O14514 1584 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 SMAPO00193 183 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 IDI1Q13907 227 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 TSR1Q2NL82 804 aaKnown RBP8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 ERICH6BQ5W0A0 696 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 CADPS2Q86UW7 1296 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 FAM9BQ8IZU0 186 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 TMC1Q8TDI8 760 aa8.14□□□□□ -1.11
VIPAS39-204ENST00000553576 EN1Q05925 392 aaPredicted RBP8.13□□□□□ -1.11
VIPAS39-204ENST00000553576 ERVK-7P63135 1459 aa8.13□□□□□ -1.11
VIPAS39-204ENST00000553576 SPATA31D1Q6ZQQ2 1576 aa8.12□□□□□ -1.11
VIPAS39-204ENST00000553576 ARHGEF40Q8TER5 1519 aa8.12□□□□□ -1.11
VIPAS39-204ENST00000553576 ARHGEF28Q8N1W1 1705 aaKnown RBP8.12□□□□□ -1.11
VIPAS39-204ENST00000553576 CLTCQ00610 1675 aaKnown RBP8.11□□□□□ -1.11
VIPAS39-204ENST00000553576 QRICH2Q9H0J4 1663 aa8.11□□□□□ -1.11
VIPAS39-204ENST00000553576 MAP3K7O43318 606 aa8.11□□□□□ -1.11
VIPAS39-204ENST00000553576 NKX2-3Q8TAU0 364 aa8.11□□□□□ -1.11
VIPAS39-204ENST00000553576 ASXL1Q8IXJ9 1541 aa8.11□□□□□ -1.11
VIPAS39-204ENST00000553576 CENPJQ9HC77 1338 aaPredicted RBP8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 APLP1P51693 650 aa8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 NBR1Q14596 966 aa8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 CDCA7LQ96GN5 454 aa8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 FAM198AQ9UFP1 575 aa8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 KNSTRNQ9Y448 316 aa8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 SMG6Q86US8 1419 aaKnown RBP8.1□□□□□ -1.11
VIPAS39-204ENST00000553576 C3orf80F5H4A9 247 aa8.09□□□□□ -1.11
VIPAS39-204ENST00000553576 NEFLP07196 543 aa8.09□□□□□ -1.11
VIPAS39-204ENST00000553576 PRSS12P56730 875 aa8.08□□□□□ -1.12
VIPAS39-204ENST00000553576 USP32Q8NFA0 1604 aa8.07□□□□□ -1.12
VIPAS39-204ENST00000553576 GGCXP38435 758 aa8.07□□□□□ -1.12
VIPAS39-204ENST00000553576 PDE3BQ13370 1112 aa8.07□□□□□ -1.12
VIPAS39-204ENST00000553576 TRIM67Q6ZTA4 783 aa8.07□□□□□ -1.12
VIPAS39-204ENST00000553576 TATDN2Q93075 761 aa8.07□□□□□ -1.12
VIPAS39-204ENST00000553576 SETD1AO15047 1707 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms