RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 WDR17Q8IZU2 1322 aa17.98■□□□□ 0.47
LINC00643-202ENST00000553426 R3HDM1Q15032 1099 aaKnown RBP17.98■□□□□ 0.47
LINC00643-202ENST00000553426 EZH2Q15910 746 aaKnown RBP17.98■□□□□ 0.47
LINC00643-202ENST00000553426 DDB1Q16531 1140 aa17.98■□□□□ 0.47
LINC00643-202ENST00000553426 PUS7Q96PZ0 661 aaKnown RBP17.98■□□□□ 0.47
LINC00643-202ENST00000553426 AXIN2Q9Y2T1 843 aa17.98■□□□□ 0.47
LINC00643-202ENST00000553426 PARD3Q8TEW0 1356 aa17.98■□□□□ 0.47
LINC00643-202ENST00000553426 TNS1Q9HBL0 1735 aaKnown RBP17.98■□□□□ 0.47
LINC00643-202ENST00000553426 CAMKK2Q96RR4 588 aa17.96■□□□□ 0.47
LINC00643-202ENST00000553426 SLC12A5Q9H2X9 1139 aa17.96■□□□□ 0.47
LINC00643-202ENST00000553426 PARP4Q9UKK3 1724 aaKnown RBP17.95■□□□□ 0.46
LINC00643-202ENST00000553426 USP31Q70CQ4 1352 aa17.94■□□□□ 0.46
LINC00643-202ENST00000553426 CARD10Q9BWT7 1032 aa17.94■□□□□ 0.46
LINC00643-202ENST00000553426 OVOS2A0A0G2JMS6 1433 aa17.94■□□□□ 0.46
LINC00643-202ENST00000553426 OVOS2A0A0J9YW53 1432 aa17.94■□□□□ 0.46
LINC00643-202ENST00000553426 OVOS2Q6IE36 1432 aa17.94■□□□□ 0.46
LINC00643-202ENST00000553426 MON2Q7Z3U7 1717 aa17.94■□□□□ 0.46
LINC00643-202ENST00000553426 EDC4Q6P2E9 1401 aaKnown RBP17.93■□□□□ 0.46
LINC00643-202ENST00000553426 ST20-MTHFSA0A0A6YYL1 179 aa17.93■□□□□ 0.46
LINC00643-202ENST00000553426 NBPF14Q5TI25 921 aa17.93■□□□□ 0.46
LINC00643-202ENST00000553426 NME9Q86XW9 330 aa17.93■□□□□ 0.46
LINC00643-202ENST00000553426 NINLQ9Y2I6 1382 aa17.92■□□□□ 0.46
LINC00643-202ENST00000553426 COL18A1P39060 1754 aa17.92■□□□□ 0.46
LINC00643-202ENST00000553426 CCDC7Q96M83 1385 aa17.91■□□□□ 0.46
LINC00643-202ENST00000553426 CD163L1Q9NR16 1453 aa17.91■□□□□ 0.46
LINC00643-202ENST00000553426 NFAT5O94916 1531 aa17.91■□□□□ 0.46
LINC00643-202ENST00000553426 ABCC6O95255 1503 aa17.91■□□□□ 0.46
LINC00643-202ENST00000553426 A0A1W2PP64 1363 aa17.91■□□□□ 0.46
LINC00643-202ENST00000553426 EXOC5O00471 708 aa17.9■□□□□ 0.46
LINC00643-202ENST00000553426 TESK2Q96S53 571 aa17.9■□□□□ 0.46
LINC00643-202ENST00000553426 NLRP2Q9NX02 1062 aa17.88■□□□□ 0.45
LINC00643-202ENST00000553426 LRRC37A3O60309 1634 aa17.87■□□□□ 0.45
LINC00643-202ENST00000553426 TMF1P82094 1093 aa17.87■□□□□ 0.45
LINC00643-202ENST00000553426 BCL11BQ9C0K0 894 aaPredicted RBP17.87■□□□□ 0.45
LINC00643-202ENST00000553426 MARCH10Q8NA82 808 aaPredicted RBP17.86■□□□□ 0.45
LINC00643-202ENST00000553426 COG3Q96JB2 828 aa17.86■□□□□ 0.45
LINC00643-202ENST00000553426 ERBB3P21860 1342 aa17.86■□□□□ 0.45
LINC00643-202ENST00000553426 RGPD5Q99666 1765 aa17.86■□□□□ 0.45
LINC00643-202ENST00000553426 PLSCR1O15162 318 aa17.85■□□□□ 0.45
LINC00643-202ENST00000553426 CDCA8Q53HL2 280 aa17.85■□□□□ 0.45
LINC00643-202ENST00000553426 USP54Q70EL1 1684 aa17.85■□□□□ 0.45
LINC00643-202ENST00000553426 USP47Q96K76 1375 aa17.84■□□□□ 0.45
LINC00643-202ENST00000553426 ANKRD24Q8TF21 1146 aa17.84■□□□□ 0.45
LINC00643-202ENST00000553426 TIMELESSQ9UNS1 1208 aa17.84■□□□□ 0.45
LINC00643-202ENST00000553426 RREB1Q92766 1687 aa17.83■□□□□ 0.45
LINC00643-202ENST00000553426 BCL9O00512 1426 aa17.83■□□□□ 0.45
LINC00643-202ENST00000553426 IL2RBP14784 551 aa17.83■□□□□ 0.44
LINC00643-202ENST00000553426 PEAK1Q9H792 1746 aa17.83■□□□□ 0.44
LINC00643-202ENST00000553426 WNK3Q9BYP7 1800 aa17.82■□□□□ 0.44
LINC00643-202ENST00000553426 NUP188Q5SRE5 1749 aa17.82■□□□□ 0.44
LINC00643-202ENST00000553426 IP6K1Q92551 441 aa17.82■□□□□ 0.44
LINC00643-202ENST00000553426 LTN1O94822 1766 aa17.81■□□□□ 0.44
LINC00643-202ENST00000553426 ANKRD36BQ8N2N9 1353 aa17.81■□□□□ 0.44
LINC00643-202ENST00000553426 TNS2Q63HR2 1409 aa17.81■□□□□ 0.44
LINC00643-202ENST00000553426 CLSPNQ9HAW4 1339 aa17.8■□□□□ 0.44
LINC00643-202ENST00000553426 YY1P25490 414 aa17.8■□□□□ 0.44
LINC00643-202ENST00000553426 AMPHP49418 695 aa17.8■□□□□ 0.44
LINC00643-202ENST00000553426 PCGF6Q9BYE7 350 aa17.8■□□□□ 0.44
LINC00643-202ENST00000553426 SBF2Q86WG5 1849 aa17.79■□□□□ 0.44
LINC00643-202ENST00000553426 LTV1Q96GA3 475 aaPredicted RBP17.78■□□□□ 0.44
LINC00643-202ENST00000553426 RGPD3A6NKT7 1758 aaPredicted RBP17.77■□□□□ 0.44
LINC00643-202ENST00000553426 RGPD4Q7Z3J3 1758 aa17.77■□□□□ 0.44
LINC00643-202ENST00000553426 PTF1AQ7RTS3 328 aa17.77■□□□□ 0.44
LINC00643-202ENST00000553426 MAP3K19Q56UN5 1328 aa17.75■□□□□ 0.43
LINC00643-202ENST00000553426 SPON1Q9HCB6 807 aa17.75■□□□□ 0.43
LINC00643-202ENST00000553426 PPP1R1BQ9UD71 204 aaPredicted RBP17.75■□□□□ 0.43
LINC00643-202ENST00000553426 HOXC9P31274 260 aa17.74■□□□□ 0.43
LINC00643-202ENST00000553426 TXNRD1Q16881 649 aa17.74■□□□□ 0.43
LINC00643-202ENST00000553426 ACSBG1Q96GR2 724 aa17.74■□□□□ 0.43
LINC00643-202ENST00000553426 FYB1O15117 783 aa17.73■□□□□ 0.43
LINC00643-202ENST00000553426 KCNQ2O43526 872 aa17.73■□□□□ 0.43
LINC00643-202ENST00000553426 GGNBP2Q9H3C7 697 aa17.73■□□□□ 0.43
LINC00643-202ENST00000553426 STK32BQ9NY57 414 aa17.73■□□□□ 0.43
LINC00643-202ENST00000553426 RTL1A6NKG5 1358 aa17.72■□□□□ 0.43
LINC00643-202ENST00000553426 PROM2Q8N271 834 aa17.72■□□□□ 0.43
LINC00643-202ENST00000553426 DDX54Q8TDD1 881 aaKnown RBP17.72■□□□□ 0.43
LINC00643-202ENST00000553426 FAM208AQ9UK61 1670 aaKnown RBP17.71■□□□□ 0.43
LINC00643-202ENST00000553426 UTRNP46939 3433 aa17.71■□□□□ 0.43
LINC00643-202ENST00000553426 FBLN1P23142 703 aa17.71■□□□□ 0.43
LINC00643-202ENST00000553426 SMG6Q86US8 1419 aaKnown RBP17.71■□□□□ 0.43
LINC00643-202ENST00000553426 RRS1Q15050 365 aaKnown RBP17.7■□□□□ 0.42
LINC00643-202ENST00000553426 ANO8Q9HCE9 1232 aaPredicted RBP17.7■□□□□ 0.42
LINC00643-202ENST00000553426 NHSQ6T4R5 1651 aa17.68■□□□□ 0.42
LINC00643-202ENST00000553426 DCAF8L1A6NGE4 600 aa17.68■□□□□ 0.42
LINC00643-202ENST00000553426 SLC15A2Q16348 729 aa17.68■□□□□ 0.42
LINC00643-202ENST00000553426 ZCRB1Q8TBF4 217 aaKnown RBP17.67■□□□□ 0.42
LINC00643-202ENST00000553426 KAT6BQ8WYB5 2073 aa17.67■□□□□ 0.42
LINC00643-202ENST00000553426 RAPGEF4Q8WZA2 1011 aa17.66■□□□□ 0.42
LINC00643-202ENST00000553426 SYTL4Q96C24 671 aaPredicted RBP17.66■□□□□ 0.42
LINC00643-202ENST00000553426 CGNL1Q0VF96 1302 aa17.66■□□□□ 0.42
LINC00643-202ENST00000553426 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
LINC00643-202ENST00000553426 CCER1Q8TC90 406 aaPredicted RBP17.65■□□□□ 0.42
LINC00643-202ENST00000553426 POLR3GLQ9BT43 218 aa17.65■□□□□ 0.42
LINC00643-202ENST00000553426 FLT4P35916 1363 aa17.65■□□□□ 0.42
LINC00643-202ENST00000553426 NSD3Q9BZ95 1437 aa17.64■□□□□ 0.42
LINC00643-202ENST00000553426 CASZ1Q86V15 1759 aa17.64■□□□□ 0.41
LINC00643-202ENST00000553426 ZBTB7AO95365 584 aa17.64■□□□□ 0.41
LINC00643-202ENST00000553426 NBPF6Q5VWK0 638 aa17.64■□□□□ 0.41
LINC00643-202ENST00000553426 NBPF4Q96M43 638 aa17.64■□□□□ 0.41
LINC00643-202ENST00000553426 PDGFDQ9GZP0 370 aaPredicted RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms