RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 TOM1L2Q6ZVM7 507 aa13.18□□□□□ -0.3
SYNE2-209ENST00000553308 CABP1Q9NZU7 370 aa13.18□□□□□ -0.3
SYNE2-209ENST00000553308 CPSF1Q10570 1443 aaKnown RBP13.17□□□□□ -0.3
SYNE2-209ENST00000553308 PLSCR1O15162 318 aa13.17□□□□□ -0.3
SYNE2-209ENST00000553308 AKAP12Q02952 1782 aa13.17□□□□□ -0.3
SYNE2-209ENST00000553308 PDGFDQ9GZP0 370 aaPredicted RBP13.16□□□□□ -0.3
SYNE2-209ENST00000553308 AXIN2Q9Y2T1 843 aa13.16□□□□□ -0.3
SYNE2-209ENST00000553308 WDR17Q8IZU2 1322 aa13.15□□□□□ -0.3
SYNE2-209ENST00000553308 RGPD5Q99666 1765 aa13.15□□□□□ -0.3
SYNE2-209ENST00000553308 MARCH10Q8NA82 808 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-209ENST00000553308 BCL11BQ9C0K0 894 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-209ENST00000553308 MYOM1P52179 1685 aa13.15□□□□□ -0.31
SYNE2-209ENST00000553308 PROM2Q8N271 834 aa13.14□□□□□ -0.31
SYNE2-209ENST00000553308 BCL9O00512 1426 aa13.13□□□□□ -0.31
SYNE2-209ENST00000553308 TRPM1Q7Z4N2 1603 aa13.13□□□□□ -0.31
SYNE2-209ENST00000553308 SOX12O15370 315 aa13.13□□□□□ -0.31
SYNE2-209ENST00000553308 ZBTB7AO95365 584 aa13.13□□□□□ -0.31
SYNE2-209ENST00000553308 DCAF8L1A6NGE4 600 aa13.12□□□□□ -0.31
SYNE2-209ENST00000553308 ARHGEF25Q86VW2 580 aa13.12□□□□□ -0.31
SYNE2-209ENST00000553308 NFAT5O94916 1531 aa13.12□□□□□ -0.31
SYNE2-209ENST00000553308 TTC21BQ7Z4L5 1316 aa13.12□□□□□ -0.31
SYNE2-209ENST00000553308 EVC2Q86UK5 1308 aa13.12□□□□□ -0.31
SYNE2-209ENST00000553308 CSB-PGBD3P0DP91 1061 aa13.11□□□□□ -0.31
SYNE2-209ENST00000553308 PTGER2P43116 358 aa13.11□□□□□ -0.31
SYNE2-209ENST00000553308 CDCA7Q9BWT1 371 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-209ENST00000553308 TXNRD1Q16881 649 aa13.1□□□□□ -0.31
SYNE2-209ENST00000553308 CARD10Q9BWT7 1032 aa13.1□□□□□ -0.31
SYNE2-209ENST00000553308 TNS2Q63HR2 1409 aa13.1□□□□□ -0.31
SYNE2-209ENST00000553308 KCNH5Q8NCM2 988 aa13.09□□□□□ -0.31
SYNE2-209ENST00000553308 STK32BQ9NY57 414 aa13.09□□□□□ -0.31
SYNE2-209ENST00000553308 ATF5Q9Y2D1 282 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-209ENST00000553308 NHSQ6T4R5 1651 aa13.08□□□□□ -0.31
SYNE2-209ENST00000553308 L3MBTL2Q969R5 705 aa13.08□□□□□ -0.32
SYNE2-209ENST00000553308 TTC21AQ8NDW8 1320 aa13.08□□□□□ -0.32
SYNE2-209ENST00000553308 ABCC6O95255 1503 aa13.08□□□□□ -0.32
SYNE2-209ENST00000553308 CCDC7Q96M83 1385 aa13.07□□□□□ -0.32
SYNE2-209ENST00000553308 EXOC5O00471 708 aa13.07□□□□□ -0.32
SYNE2-209ENST00000553308 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
SYNE2-209ENST00000553308 ZNF692Q9BU19 519 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-209ENST00000553308 MON2Q7Z3U7 1717 aa13.07□□□□□ -0.32
SYNE2-209ENST00000553308 PAPPAQ13219 1627 aa13.06□□□□□ -0.32
SYNE2-209ENST00000553308 FHDC1Q9C0D6 1143 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-209ENST00000553308 ROCK2O75116 1388 aaKnown RBP13.06□□□□□ -0.32
SYNE2-209ENST00000553308 KTN1Q86UP2 1357 aaKnown RBP13.06□□□□□ -0.32
SYNE2-209ENST00000553308 ACSBG1Q96GR2 724 aa13.05□□□□□ -0.32
SYNE2-209ENST00000553308 USP54Q70EL1 1684 aa13.05□□□□□ -0.32
SYNE2-209ENST00000553308 ZNF784Q8NCA9 323 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-209ENST00000553308 SGIP1Q9BQI5 828 aa13.04□□□□□ -0.32
SYNE2-209ENST00000553308 SYT17Q9BSW7 474 aa13.04□□□□□ -0.32
SYNE2-209ENST00000553308 MTFR1LQ9H019 292 aa13.04□□□□□ -0.32
SYNE2-209ENST00000553308 BTAF1O14981 1849 aa13.04□□□□□ -0.32
SYNE2-209ENST00000553308 LTN1O94822 1766 aa13.03□□□□□ -0.32
SYNE2-209ENST00000553308 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.03□□□□□ -0.32
SYNE2-209ENST00000553308 ERBB3P21860 1342 aa13.03□□□□□ -0.32
SYNE2-209ENST00000553308 NME9Q86XW9 330 aa13.02□□□□□ -0.33
SYNE2-209ENST00000553308 SIN3AQ96ST3 1273 aa13.02□□□□□ -0.33
SYNE2-209ENST00000553308 NLRP2Q9NX02 1062 aa13.02□□□□□ -0.33
SYNE2-209ENST00000553308 USP31Q70CQ4 1352 aa13.02□□□□□ -0.33
SYNE2-209ENST00000553308 CD163L1Q9NR16 1453 aa13.02□□□□□ -0.33
SYNE2-209ENST00000553308 IL2RBP14784 551 aa13.01□□□□□ -0.33
SYNE2-209ENST00000553308 ZNF827Q17R98 1081 aa13.01□□□□□ -0.33
SYNE2-209ENST00000553308 SBNO2Q9Y2G9 1366 aa13.01□□□□□ -0.33
SYNE2-209ENST00000553308 ANKRD24Q8TF21 1146 aa12.99□□□□□ -0.33
SYNE2-209ENST00000553308 ARXQ96QS3 562 aa12.99□□□□□ -0.33
SYNE2-209ENST00000553308 LRRC4BQ9NT99 713 aa12.99□□□□□ -0.33
SYNE2-209ENST00000553308 CHD4Q14839 1912 aa12.99□□□□□ -0.33
SYNE2-209ENST00000553308 MAP3K5Q99683 1374 aa12.98□□□□□ -0.33
SYNE2-209ENST00000553308 NEUROD1Q13562 356 aa12.98□□□□□ -0.33
SYNE2-209ENST00000553308 TMC1Q8TDI8 760 aa12.96□□□□□ -0.33
SYNE2-209ENST00000553308 QSER1Q2KHR3 1735 aa12.96□□□□□ -0.34
SYNE2-209ENST00000553308 EDC4Q6P2E9 1401 aaKnown RBP12.96□□□□□ -0.34
SYNE2-209ENST00000553308 TUBGCP6Q96RT7 1819 aa12.95□□□□□ -0.34
SYNE2-209ENST00000553308 AKT1S1Q96B36 256 aa12.95□□□□□ -0.34
SYNE2-209ENST00000553308 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
SYNE2-209ENST00000553308 A0A1W2PP64 1363 aa12.94□□□□□ -0.34
SYNE2-209ENST00000553308 COL24A1Q17RW2 1714 aa12.94□□□□□ -0.34
SYNE2-209ENST00000553308 KAT6BQ8WYB5 2073 aa12.94□□□□□ -0.34
SYNE2-209ENST00000553308 FAM208AQ9UK61 1670 aaKnown RBP12.94□□□□□ -0.34
SYNE2-209ENST00000553308 SENP3-EIF4A1A0A087X0R7 540 aa12.94□□□□□ -0.34
SYNE2-209ENST00000553308 HDGFL2Q7Z4V5 671 aaPredicted RBP12.94□□□□□ -0.34
SYNE2-209ENST00000553308 KLHL34Q8N239 644 aa12.94□□□□□ -0.34
SYNE2-209ENST00000553308 DOT1LQ8TEK3 1739 aa12.93□□□□□ -0.34
SYNE2-209ENST00000553308 PNPLA7Q6ZV29 1317 aa12.93□□□□□ -0.34
SYNE2-209ENST00000553308 KCNQ4P56696 695 aa12.93□□□□□ -0.34
SYNE2-209ENST00000553308 GPR162Q16538 588 aa12.93□□□□□ -0.34
SYNE2-209ENST00000553308 DDX54Q8TDD1 881 aaKnown RBP12.93□□□□□ -0.34
SYNE2-209ENST00000553308 LTV1Q96GA3 475 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-209ENST00000553308 C1QTNF8P60827 252 aa12.92□□□□□ -0.34
SYNE2-209ENST00000553308 SLC27A3Q5K4L6 730 aa12.92□□□□□ -0.34
SYNE2-209ENST00000553308 CARD11Q9BXL7 1154 aa12.92□□□□□ -0.34
SYNE2-209ENST00000553308 SHANK3Q9BYB0 1731 aa12.92□□□□□ -0.34
SYNE2-209ENST00000553308 LY75O60449 1722 aa12.91□□□□□ -0.34
SYNE2-209ENST00000553308 SLC16A10Q8TF71 515 aa12.91□□□□□ -0.34
SYNE2-209ENST00000553308 IP6K1Q92551 441 aa12.91□□□□□ -0.34
SYNE2-209ENST00000553308 SYTL4Q96C24 671 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-209ENST00000553308 NSD2O96028 1365 aa12.91□□□□□ -0.34
SYNE2-209ENST00000553308 RGPD2P0DJD1 1756 aa12.9□□□□□ -0.34
SYNE2-209ENST00000553308 POLD1P28340 1107 aa12.9□□□□□ -0.34
SYNE2-209ENST00000553308 PRIM1P49642 420 aaKnown RBP12.9□□□□□ -0.34
SYNE2-209ENST00000553308 PELP1Q8IZL8 1130 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms