RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 AXIN2Q9Y2T1 843 aa26.21■■□□□ 1.79
HDAC4-217ENST00000553145 USP35Q9P2H5 1018 aa26.19■■□□□ 1.78
HDAC4-217ENST00000553145 RGPD5Q99666 1765 aa26.19■■□□□ 1.78
HDAC4-217ENST00000553145 CRB1P82279 1406 aa26.16■■□□□ 1.78
HDAC4-217ENST00000553145 LTN1O94822 1766 aa26.16■■□□□ 1.78
HDAC4-217ENST00000553145 ABCC6O95255 1503 aa26.16■■□□□ 1.78
HDAC4-217ENST00000553145 KRT27Q7Z3Y8 459 aa26.16■■□□□ 1.78
HDAC4-217ENST00000553145 BARGINQ6ZT62 677 aa26.13■■□□□ 1.77
HDAC4-217ENST00000553145 TCP11L2Q8N4U5 519 aa26.13■■□□□ 1.77
HDAC4-217ENST00000553145 CARD14Q9BXL6 1004 aa26.13■■□□□ 1.77
HDAC4-217ENST00000553145 POLR3GLQ9BT43 218 aa26.12■■□□□ 1.77
HDAC4-217ENST00000553145 WDR17Q8IZU2 1322 aa26.12■■□□□ 1.77
HDAC4-217ENST00000553145 EP400Q96L91 3159 aa26.11■■□□□ 1.77
HDAC4-217ENST00000553145 FYB1O15117 783 aa26.11■■□□□ 1.77
HDAC4-217ENST00000553145 COG3Q96JB2 828 aa26.11■■□□□ 1.77
HDAC4-217ENST00000553145 KIF20BQ96Q89 1820 aa26.11■■□□□ 1.77
HDAC4-217ENST00000553145 GGNBP2Q9H3C7 697 aa26.1■■□□□ 1.77
HDAC4-217ENST00000553145 NSD3Q9BZ95 1437 aa26.1■■□□□ 1.77
HDAC4-217ENST00000553145 FAM182BQ5T319 152 aa26.09■■□□□ 1.77
HDAC4-217ENST00000553145 TOM1L2Q6ZVM7 507 aa26.09■■□□□ 1.77
HDAC4-217ENST00000553145 THRAP3Q9Y2W1 955 aaKnown RBP26.09■■□□□ 1.77
HDAC4-217ENST00000553145 C11orf95C9JLR9 678 aaPredicted RBP26.08■■□□□ 1.77
HDAC4-217ENST00000553145 FBLN1P23142 703 aa26.07■■□□□ 1.76
HDAC4-217ENST00000553145 WNK3Q9BYP7 1800 aa26.07■■□□□ 1.76
HDAC4-217ENST00000553145 BLMP54132 1417 aaPredicted RBP26.06■■□□□ 1.76
HDAC4-217ENST00000553145 PARP4Q9UKK3 1724 aaKnown RBP26.06■■□□□ 1.76
HDAC4-217ENST00000553145 CSB-PGBD3P0DP91 1061 aa26.05■■□□□ 1.76
HDAC4-217ENST00000553145 ERBB3P21860 1342 aa26.04■■□□□ 1.76
HDAC4-217ENST00000553145 MAP3K19Q56UN5 1328 aa26.04■■□□□ 1.76
HDAC4-217ENST00000553145 CCDC125Q86Z20 511 aa26.03■■□□□ 1.76
HDAC4-217ENST00000553145 LRRC37A3O60309 1634 aa26.03■■□□□ 1.76
HDAC4-217ENST00000553145 CARD10Q9BWT7 1032 aa26.02■■□□□ 1.76
HDAC4-217ENST00000553145 DISP2A7MBM2 1401 aa26■■□□□ 1.75
HDAC4-217ENST00000553145 ANKRD24Q8TF21 1146 aa26■■□□□ 1.75
HDAC4-217ENST00000553145 IP6K1Q92551 441 aa26■■□□□ 1.75
HDAC4-217ENST00000553145 HOXC9P31274 260 aa25.98■■□□□ 1.75
HDAC4-217ENST00000553145 RRS1Q15050 365 aaKnown RBP25.98■■□□□ 1.75
HDAC4-217ENST00000553145 CCDC7Q96M83 1385 aa25.97■■□□□ 1.75
HDAC4-217ENST00000553145 PDE3BQ13370 1112 aa25.97■■□□□ 1.75
HDAC4-217ENST00000553145 KIF7Q2M1P5 1343 aa25.96■■□□□ 1.75
HDAC4-217ENST00000553145 DEFB132Q7Z7B7 95 aa25.96■■□□□ 1.75
HDAC4-217ENST00000553145 PANK3Q9H999 370 aa25.96■■□□□ 1.75
HDAC4-217ENST00000553145 RGPD1P0DJD0 1748 aa25.96■■□□□ 1.75
HDAC4-217ENST00000553145 PEAK1Q9H792 1746 aa25.95■■□□□ 1.74
HDAC4-217ENST00000553145 TNS1Q9HBL0 1735 aaKnown RBP25.95■■□□□ 1.74
HDAC4-217ENST00000553145 AMPHP49418 695 aa25.95■■□□□ 1.74
HDAC4-217ENST00000553145 NLRP2Q9NX02 1062 aa25.95■■□□□ 1.74
HDAC4-217ENST00000553145 RTL1A6NKG5 1358 aa25.95■■□□□ 1.74
HDAC4-217ENST00000553145 CGNL1Q0VF96 1302 aa25.94■■□□□ 1.74
HDAC4-217ENST00000553145 FAM208AQ9UK61 1670 aaKnown RBP25.93■■□□□ 1.74
HDAC4-217ENST00000553145 SF3B2Q13435 895 aaKnown RBP25.93■■□□□ 1.74
HDAC4-217ENST00000553145 FAM196AQ6ZSG2 479 aa25.93■■□□□ 1.74
HDAC4-217ENST00000553145 LTV1Q96GA3 475 aaPredicted RBP25.93■■□□□ 1.74
HDAC4-217ENST00000553145 ANKRD26Q9UPS8 1709 aa25.92■■□□□ 1.74
HDAC4-217ENST00000553145 DDB1Q16531 1140 aa25.92■■□□□ 1.74
HDAC4-217ENST00000553145 CDCA7Q9BWT1 371 aaPredicted RBP25.92■■□□□ 1.74
HDAC4-217ENST00000553145 RGPD2P0DJD1 1756 aa25.89■■□□□ 1.73
HDAC4-217ENST00000553145 OVOS2A0A0G2JMS6 1433 aa25.88■■□□□ 1.73
HDAC4-217ENST00000553145 TRIM37O94972 964 aa25.88■■□□□ 1.73
HDAC4-217ENST00000553145 EMILIN1Q9Y6C2 1016 aa25.88■■□□□ 1.73
HDAC4-217ENST00000553145 TNS2Q63HR2 1409 aa25.88■■□□□ 1.73
HDAC4-217ENST00000553145 MARCH10Q8NA82 808 aaPredicted RBP25.87■■□□□ 1.73
HDAC4-217ENST00000553145 FLT4P35916 1363 aa25.86■■□□□ 1.73
HDAC4-217ENST00000553145 KIF24Q5T7B8 1368 aa25.85■■□□□ 1.73
HDAC4-217ENST00000553145 IL2RBP14784 551 aa25.85■■□□□ 1.73
HDAC4-217ENST00000553145 BAG6P46379 1132 aa25.85■■□□□ 1.73
HDAC4-217ENST00000553145 HSP90AB2PQ58FF8 381 aa25.85■■□□□ 1.73
HDAC4-217ENST00000553145 INSRP06213 1382 aa25.84■■□□□ 1.73
HDAC4-217ENST00000553145 EXOC5O00471 708 aa25.83■■□□□ 1.73
HDAC4-217ENST00000553145 SBF2Q86WG5 1849 aa25.82■■□□□ 1.72
HDAC4-217ENST00000553145 EN1Q05925 392 aaPredicted RBP25.82■■□□□ 1.72
HDAC4-217ENST00000553145 NSD2O96028 1365 aa25.82■■□□□ 1.72
HDAC4-217ENST00000553145 MAP2P11137 1827 aaKnown RBP25.81■■□□□ 1.72
HDAC4-217ENST00000553145 NBPF6Q5VWK0 638 aa25.81■■□□□ 1.72
HDAC4-217ENST00000553145 NBPF4Q96M43 638 aa25.81■■□□□ 1.72
HDAC4-217ENST00000553145 WASHC2AQ641Q2 1341 aa25.81■■□□□ 1.72
HDAC4-217ENST00000553145 SMG6Q86US8 1419 aaKnown RBP25.8■■□□□ 1.72
HDAC4-217ENST00000553145 TNNT2P45379 298 aaPredicted RBP25.8■■□□□ 1.72
HDAC4-217ENST00000553145 POLKQ9UBT6 870 aa25.8■■□□□ 1.72
HDAC4-217ENST00000553145 BCL9O00512 1426 aa25.8■■□□□ 1.72
HDAC4-217ENST00000553145 PPM1GO15355 546 aaPredicted RBP25.79■■□□□ 1.72
HDAC4-217ENST00000553145 USHBP1Q8N6Y0 703 aa25.79■■□□□ 1.72
HDAC4-217ENST00000553145 MEGF6O75095 1541 aa25.78■■□□□ 1.72
HDAC4-217ENST00000553145 APBA3O96018 575 aa25.78■■□□□ 1.72
HDAC4-217ENST00000553145 KNSTRNQ9Y448 316 aa25.78■■□□□ 1.72
HDAC4-217ENST00000553145 PTF1AQ7RTS3 328 aa25.77■■□□□ 1.72
HDAC4-217ENST00000553145 EZH2Q15910 746 aaKnown RBP25.76■■□□□ 1.71
HDAC4-217ENST00000553145 AMER1Q5JTC6 1135 aaPredicted RBP25.76■■□□□ 1.71
HDAC4-217ENST00000553145 CAMKK2Q96RR4 588 aa25.75■■□□□ 1.71
HDAC4-217ENST00000553145 SHANK3Q9BYB0 1731 aa25.74■■□□□ 1.71
HDAC4-217ENST00000553145 PER1O15534 1290 aaPredicted RBP25.73■■□□□ 1.71
HDAC4-217ENST00000553145 MORC1Q86VD1 984 aa25.73■■□□□ 1.71
HDAC4-217ENST00000553145 RREB1Q92766 1687 aa25.72■■□□□ 1.71
HDAC4-217ENST00000553145 BCL11BQ9C0K0 894 aaPredicted RBP25.71■■□□□ 1.71
HDAC4-217ENST00000553145 NCAPD2Q15021 1401 aa25.71■■□□□ 1.71
HDAC4-217ENST00000553145 NHSQ6T4R5 1651 aa25.7■■□□□ 1.7
HDAC4-217ENST00000553145 PARD3Q8TEW0 1356 aa25.69■■□□□ 1.7
HDAC4-217ENST00000553145 KCNQ2O43526 872 aa25.68■■□□□ 1.7
HDAC4-217ENST00000553145 DDX54Q8TDD1 881 aaKnown RBP25.68■■□□□ 1.7
HDAC4-217ENST00000553145 NUP188Q5SRE5 1749 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms