RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 AATKQ6ZMQ8 1374 aa18.98■□□□□ 0.63
VPS29-211ENST00000553128 RAB3GAP2Q9H2M9 1393 aa18.98■□□□□ 0.63
VPS29-211ENST00000553128 C1QTNF8P60827 252 aa18.98■□□□□ 0.63
VPS29-211ENST00000553128 TXNRD1Q16881 649 aa18.98■□□□□ 0.63
VPS29-211ENST00000553128 SGIP1Q9BQI5 828 aa18.98■□□□□ 0.63
VPS29-211ENST00000553128 PPIP5K1Q6PFW1 1433 aa18.98■□□□□ 0.63
VPS29-211ENST00000553128 GOLGB1Q14789 3259 aaKnown RBP18.98■□□□□ 0.63
VPS29-211ENST00000553128 SLC15A2Q16348 729 aa18.97■□□□□ 0.63
VPS29-211ENST00000553128 STK32BQ9NY57 414 aa18.96■□□□□ 0.63
VPS29-211ENST00000553128 COL18A1P39060 1754 aa18.96■□□□□ 0.63
VPS29-211ENST00000553128 SLIT3O75094 1523 aa18.95■□□□□ 0.62
VPS29-211ENST00000553128 BCL9O00512 1426 aa18.95■□□□□ 0.62
VPS29-211ENST00000553128 NLRP6P59044 892 aa18.95■□□□□ 0.62
VPS29-211ENST00000553128 CABP2Q9NPB3 220 aa18.95■□□□□ 0.62
VPS29-211ENST00000553128 WNK3Q9BYP7 1800 aa18.95■□□□□ 0.62
VPS29-211ENST00000553128 CEP350Q5VT06 3117 aa18.94■□□□□ 0.62
VPS29-211ENST00000553128 WDR17Q8IZU2 1322 aa18.94■□□□□ 0.62
VPS29-211ENST00000553128 SRPK2P78362 688 aaKnown RBP18.93■□□□□ 0.62
VPS29-211ENST00000553128 STAC3Q96MF2 364 aa18.93■□□□□ 0.62
VPS29-211ENST00000553128 MTFR1LQ9H019 292 aa18.93■□□□□ 0.62
VPS29-211ENST00000553128 NBPF1Q3BBV0 1214 aa18.92■□□□□ 0.62
VPS29-211ENST00000553128 USP6P35125 1406 aa18.91■□□□□ 0.62
VPS29-211ENST00000553128 AKAP12Q02952 1782 aa18.91■□□□□ 0.62
VPS29-211ENST00000553128 CABP1Q9NZU7 370 aa18.9■□□□□ 0.62
VPS29-211ENST00000553128 CHD4Q14839 1912 aa18.9■□□□□ 0.62
VPS29-211ENST00000553128 PIK3C2AO00443 1686 aa18.89■□□□□ 0.61
VPS29-211ENST00000553128 ARXQ96QS3 562 aa18.89■□□□□ 0.61
VPS29-211ENST00000553128 CPSF1Q10570 1443 aaKnown RBP18.89■□□□□ 0.61
VPS29-211ENST00000553128 IFFO2Q5TF58 517 aa18.88■□□□□ 0.61
VPS29-211ENST00000553128 CDCA7Q9BWT1 371 aaPredicted RBP18.88■□□□□ 0.61
VPS29-211ENST00000553128 BRD4O60885 1362 aaPredicted RBP18.88■□□□□ 0.61
VPS29-211ENST00000553128 SOX12O15370 315 aa18.87■□□□□ 0.61
VPS29-211ENST00000553128 ARHGEF25Q86VW2 580 aa18.87■□□□□ 0.61
VPS29-211ENST00000553128 ACSBG1Q96GR2 724 aa18.87■□□□□ 0.61
VPS29-211ENST00000553128 CARD10Q9BWT7 1032 aa18.87■□□□□ 0.61
VPS29-211ENST00000553128 RGPD5Q99666 1765 aa18.86■□□□□ 0.61
VPS29-211ENST00000553128 PAPPAQ13219 1627 aa18.85■□□□□ 0.61
VPS29-211ENST00000553128 CENPJQ9HC77 1338 aaPredicted RBP18.85■□□□□ 0.61
VPS29-211ENST00000553128 EXOC5O00471 708 aa18.85■□□□□ 0.61
VPS29-211ENST00000553128 CSB-PGBD3P0DP91 1061 aa18.85■□□□□ 0.61
VPS29-211ENST00000553128 ZNF827Q17R98 1081 aa18.85■□□□□ 0.61
VPS29-211ENST00000553128 MAP3K5Q99683 1374 aa18.84■□□□□ 0.61
VPS29-211ENST00000553128 KIAA1210Q9ULL0 1709 aa18.83■□□□□ 0.61
VPS29-211ENST00000553128 GPR162Q16538 588 aa18.83■□□□□ 0.6
VPS29-211ENST00000553128 TNS2Q63HR2 1409 aa18.83■□□□□ 0.6
VPS29-211ENST00000553128 NHSQ6T4R5 1651 aa18.82■□□□□ 0.6
VPS29-211ENST00000553128 LRRC4BQ9NT99 713 aa18.82■□□□□ 0.6
VPS29-211ENST00000553128 GIGYF1O75420 1035 aaPredicted RBP18.81■□□□□ 0.6
VPS29-211ENST00000553128 TTC21BQ7Z4L5 1316 aa18.8■□□□□ 0.6
VPS29-211ENST00000553128 QRICH2Q9H0J4 1663 aa18.8■□□□□ 0.6
VPS29-211ENST00000553128 TRPM1Q7Z4N2 1603 aa18.8■□□□□ 0.6
VPS29-211ENST00000553128 KLHL34Q8N239 644 aa18.79■□□□□ 0.6
VPS29-211ENST00000553128 CCDC7Q96M83 1385 aa18.79■□□□□ 0.6
VPS29-211ENST00000553128 NFAT5O94916 1531 aa18.79■□□□□ 0.6
VPS29-211ENST00000553128 PELP1Q8IZL8 1130 aaKnown RBP18.78■□□□□ 0.6
VPS29-211ENST00000553128 SHANK3Q9BYB0 1731 aa18.77■□□□□ 0.6
VPS29-211ENST00000553128 KCNH5Q8NCM2 988 aa18.77■□□□□ 0.6
VPS29-211ENST00000553128 ABCC6O95255 1503 aa18.76■□□□□ 0.59
VPS29-211ENST00000553128 NLGN2Q8NFZ4 835 aa18.76■□□□□ 0.59
VPS29-211ENST00000553128 AKT1S1Q96B36 256 aa18.76■□□□□ 0.59
VPS29-211ENST00000553128 BTAF1O14981 1849 aa18.76■□□□□ 0.59
VPS29-211ENST00000553128 PNPLA7Q6ZV29 1317 aa18.74■□□□□ 0.59
VPS29-211ENST00000553128 KCNQ4P56696 695 aa18.73■□□□□ 0.59
VPS29-211ENST00000553128 NLRP2Q9NX02 1062 aa18.72■□□□□ 0.59
VPS29-211ENST00000553128 ERBB3P21860 1342 aa18.72■□□□□ 0.59
VPS29-211ENST00000553128 IL2RBP14784 551 aa18.71■□□□□ 0.59
VPS29-211ENST00000553128 YBX3P16989 372 aaKnown RBP eCLIP18.71■□□□□ 0.591e-6■■□□□ 11.7
VPS29-211ENST00000553128 EVC2Q86UK5 1308 aa18.71■□□□□ 0.59
VPS29-211ENST00000553128 TTC21AQ8NDW8 1320 aa18.71■□□□□ 0.59
VPS29-211ENST00000553128 POLD1P28340 1107 aa18.7■□□□□ 0.58
VPS29-211ENST00000553128 COL24A1Q17RW2 1714 aa18.7■□□□□ 0.58
VPS29-211ENST00000553128 ZNF692Q9BU19 519 aaPredicted RBP18.7■□□□□ 0.58
VPS29-211ENST00000553128 SLC16A10Q8TF71 515 aa18.69■□□□□ 0.58
VPS29-211ENST00000553128 TUBGCP6Q96RT7 1819 aa18.68■□□□□ 0.58
VPS29-211ENST00000553128 QSER1Q2KHR3 1735 aa18.67■□□□□ 0.58
VPS29-211ENST00000553128 KTN1Q86UP2 1357 aaKnown RBP18.67■□□□□ 0.58
VPS29-211ENST00000553128 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.66■□□□□ 0.58
VPS29-211ENST00000553128 ANKRD24Q8TF21 1146 aa18.66■□□□□ 0.58
VPS29-211ENST00000553128 TFCP2L1Q9NZI6 479 aa18.66■□□□□ 0.58
VPS29-211ENST00000553128 SLC27A3Q5K4L6 730 aa18.65■□□□□ 0.58
VPS29-211ENST00000553128 NME9Q86XW9 330 aa18.65■□□□□ 0.58
VPS29-211ENST00000553128 DDX54Q8TDD1 881 aaKnown RBP18.64■□□□□ 0.57
VPS29-211ENST00000553128 USP31Q70CQ4 1352 aa18.64■□□□□ 0.57
VPS29-211ENST00000553128 ATP10DQ9P241 1426 aa18.64■□□□□ 0.57
VPS29-211ENST00000553128 KAT6BQ8WYB5 2073 aa18.64■□□□□ 0.57
VPS29-211ENST00000553128 LTN1O94822 1766 aa18.62■□□□□ 0.57
VPS29-211ENST00000553128 MON2Q7Z3U7 1717 aa18.61■□□□□ 0.57
VPS29-211ENST00000553128 NSD2O96028 1365 aa18.61■□□□□ 0.57
VPS29-211ENST00000553128 SYTL4Q96C24 671 aaPredicted RBP18.61■□□□□ 0.57
VPS29-211ENST00000553128 CD163L1Q9NR16 1453 aa18.6■□□□□ 0.57
VPS29-211ENST00000553128 SBNO2Q9Y2G9 1366 aa18.6■□□□□ 0.57
VPS29-211ENST00000553128 GRIN3BO60391 1043 aa18.6■□□□□ 0.57
VPS29-211ENST00000553128 PRIM1P49642 420 aaKnown RBP18.6■□□□□ 0.57
VPS29-211ENST00000553128 MSL1Q68DK7 614 aa18.6■□□□□ 0.57
VPS29-211ENST00000553128 USP54Q70EL1 1684 aa18.6■□□□□ 0.57
VPS29-211ENST00000553128 COL23A1Q86Y22 540 aaPredicted RBP18.59■□□□□ 0.57
VPS29-211ENST00000553128 L3MBTL2Q969R5 705 aa18.59■□□□□ 0.57
VPS29-211ENST00000553128 MSH5O43196 834 aa18.57■□□□□ 0.56
VPS29-211ENST00000553128 ZNF526Q8TF50 670 aaPredicted RBP18.57■□□□□ 0.56
VPS29-211ENST00000553128 LTV1Q96GA3 475 aaPredicted RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms