RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SLC15A2Q16348 729 aa21.48■■□□□ 1.03
VPS29-209ENST00000551655 TXNRD1Q16881 649 aa21.48■■□□□ 1.03
VPS29-209ENST00000551655 POLR3AO14802 1390 aaPredicted RBP21.48■■□□□ 1.03
VPS29-209ENST00000551655 MARCH10Q8NA82 808 aaPredicted RBP21.47■■□□□ 1.03
VPS29-209ENST00000551655 MTFR1LQ9H019 292 aa21.47■■□□□ 1.03
VPS29-209ENST00000551655 GCP02774 474 aa21.45■■□□□ 1.02
VPS29-209ENST00000551655 ARXQ96QS3 562 aa21.45■■□□□ 1.02
VPS29-209ENST00000551655 SHANK3Q9BYB0 1731 aa21.45■■□□□ 1.02
VPS29-209ENST00000551655 CDK19Q9BWU1 502 aa21.44■■□□□ 1.02
VPS29-209ENST00000551655 GPR162Q16538 588 aa21.43■■□□□ 1.02
VPS29-209ENST00000551655 KDM2AQ9Y2K7 1162 aa21.43■■□□□ 1.02
VPS29-209ENST00000551655 TOM1L2Q6ZVM7 507 aa21.41■■□□□ 1.02
VPS29-209ENST00000551655 MAP3K5Q99683 1374 aa21.39■■□□□ 1.02
VPS29-209ENST00000551655 COL18A1P39060 1754 aa21.39■■□□□ 1.01
VPS29-209ENST00000551655 PELP1Q8IZL8 1130 aaKnown RBP21.39■■□□□ 1.01
VPS29-209ENST00000551655 KLHL34Q8N239 644 aa21.39■■□□□ 1.01
VPS29-209ENST00000551655 PAPPAQ13219 1627 aa21.39■■□□□ 1.01
VPS29-209ENST00000551655 NLRP13Q86W25 1043 aa21.38■■□□□ 1.01
VPS29-209ENST00000551655 BCL9O00512 1426 aa21.38■■□□□ 1.01
VPS29-209ENST00000551655 PLEKHG3A1L390 1219 aa21.37■■□□□ 1.01
VPS29-209ENST00000551655 CCDC61Q9Y6R9 512 aa21.37■■□□□ 1.01
VPS29-209ENST00000551655 AATKQ6ZMQ8 1374 aa21.36■■□□□ 1.01
VPS29-209ENST00000551655 AXIN2Q9Y2T1 843 aa21.36■■□□□ 1.01
VPS29-209ENST00000551655 RGPD5Q99666 1765 aa21.36■■□□□ 1.01
VPS29-209ENST00000551655 ZNF827Q17R98 1081 aa21.34■■□□□ 1.01
VPS29-209ENST00000551655 DCAF11Q8TEB1 546 aa21.34■■□□□ 1.01
VPS29-209ENST00000551655 SLIT3O75094 1523 aa21.34■■□□□ 1.01
VPS29-209ENST00000551655 NHSQ6T4R5 1651 aa21.34■■□□□ 1.01
VPS29-209ENST00000551655 WDR17Q8IZU2 1322 aa21.33■■□□□ 1.01
VPS29-209ENST00000551655 PPIP5K1Q6PFW1 1433 aa21.31■■□□□ 1
VPS29-209ENST00000551655 NLGN2Q8NFZ4 835 aa21.31■■□□□ 1
VPS29-209ENST00000551655 ACSBG1Q96GR2 724 aa21.31■■□□□ 1
VPS29-209ENST00000551655 NLRP6P59044 892 aa21.3■■□□□ 1
VPS29-209ENST00000551655 PIK3C2AO00443 1686 aa21.29■■□□□ 1
VPS29-209ENST00000551655 BTAF1O14981 1849 aa21.28■■□□□ 1
VPS29-209ENST00000551655 CDCA7Q9BWT1 371 aaPredicted RBP21.27■■□□□ 1
VPS29-209ENST00000551655 CPSF1Q10570 1443 aaKnown RBP21.27■■□□□ 1
VPS29-209ENST00000551655 EXOC5O00471 708 aa21.26■□□□□ 0.99
VPS29-209ENST00000551655 YBX3P16989 372 aaKnown RBP eCLIP21.26■□□□□ 0.99
VPS29-209ENST00000551655 LRRC4BQ9NT99 713 aa21.26■□□□□ 0.99
VPS29-209ENST00000551655 TNS2Q63HR2 1409 aa21.26■□□□□ 0.99
VPS29-209ENST00000551655 COL24A1Q17RW2 1714 aa21.26■□□□□ 0.99
VPS29-209ENST00000551655 TUBGCP6Q96RT7 1819 aa21.25■□□□□ 0.99
VPS29-209ENST00000551655 CSB-PGBD3P0DP91 1061 aa21.25■□□□□ 0.99
VPS29-209ENST00000551655 CABP2Q9NPB3 220 aa21.25■□□□□ 0.99
VPS29-209ENST00000551655 ATP10DQ9P241 1426 aa21.25■□□□□ 0.99
VPS29-209ENST00000551655 USP6P35125 1406 aa21.24■□□□□ 0.99
VPS29-209ENST00000551655 SOX12O15370 315 aa21.24■□□□□ 0.99
VPS29-209ENST00000551655 SRPK2P78362 688 aaKnown RBP21.24■□□□□ 0.99
VPS29-209ENST00000551655 CARD10Q9BWT7 1032 aa21.24■□□□□ 0.99
VPS29-209ENST00000551655 TRPM1Q7Z4N2 1603 aa21.22■□□□□ 0.99
VPS29-209ENST00000551655 QSER1Q2KHR3 1735 aa21.21■□□□□ 0.99
VPS29-209ENST00000551655 POLD1P28340 1107 aa21.2■□□□□ 0.98
VPS29-209ENST00000551655 ARHGEF25Q86VW2 580 aa21.2■□□□□ 0.98
VPS29-209ENST00000551655 AKT1S1Q96B36 256 aa21.2■□□□□ 0.98
VPS29-209ENST00000551655 BRD4O60885 1362 aaPredicted RBP21.2■□□□□ 0.98
VPS29-209ENST00000551655 ABCC6O95255 1503 aa21.19■□□□□ 0.98
VPS29-209ENST00000551655 CABP1Q9NZU7 370 aa21.19■□□□□ 0.98
VPS29-209ENST00000551655 PNPLA7Q6ZV29 1317 aa21.19■□□□□ 0.98
VPS29-209ENST00000551655 QRICH2Q9H0J4 1663 aa21.18■□□□□ 0.98
VPS29-209ENST00000551655 KAT6BQ8WYB5 2073 aa21.18■□□□□ 0.98
VPS29-209ENST00000551655 HSPA6P17066 643 aa21.18■□□□□ 0.98
VPS29-209ENST00000551655 ZNF526Q8TF50 670 aaPredicted RBP21.18■□□□□ 0.98
VPS29-209ENST00000551655 KCNQ4P56696 695 aa21.17■□□□□ 0.98
VPS29-209ENST00000551655 CCDC7Q96M83 1385 aa21.16■□□□□ 0.98
VPS29-209ENST00000551655 SLC16A10Q8TF71 515 aa21.15■□□□□ 0.98
VPS29-209ENST00000551655 GPBP1L1Q9HC44 474 aaPredicted RBP21.15■□□□□ 0.98
VPS29-209ENST00000551655 NFAT5O94916 1531 aa21.14■□□□□ 0.98
VPS29-209ENST00000551655 NBPF1Q3BBV0 1214 aa21.14■□□□□ 0.97
VPS29-209ENST00000551655 GRIN3BO60391 1043 aa21.13■□□□□ 0.97
VPS29-209ENST00000551655 TFCP2L1Q9NZI6 479 aa21.11■□□□□ 0.97
VPS29-209ENST00000551655 KIAA1210Q9ULL0 1709 aa21.11■□□□□ 0.97
VPS29-209ENST00000551655 ADCY9O60503 1353 aa21.1■□□□□ 0.97
VPS29-209ENST00000551655 RAB3GAP2Q9H2M9 1393 aa21.1■□□□□ 0.97
VPS29-209ENST00000551655 CENPJQ9HC77 1338 aaPredicted RBP21.09■□□□□ 0.97
VPS29-209ENST00000551655 KCNH5Q8NCM2 988 aa21.09■□□□□ 0.97
VPS29-209ENST00000551655 STAC3Q96MF2 364 aa21.09■□□□□ 0.97
VPS29-209ENST00000551655 TTC21BQ7Z4L5 1316 aa21.08■□□□□ 0.97
VPS29-209ENST00000551655 NLRP2Q9NX02 1062 aa21.08■□□□□ 0.97
VPS29-209ENST00000551655 MSL1Q68DK7 614 aa21.07■□□□□ 0.96
VPS29-209ENST00000551655 IL2RBP14784 551 aa21.06■□□□□ 0.96
VPS29-209ENST00000551655 SLC27A3Q5K4L6 730 aa21.05■□□□□ 0.96
VPS29-209ENST00000551655 ERBB3P21860 1342 aa21.04■□□□□ 0.96
VPS29-209ENST00000551655 LY75O60449 1722 aa21.04■□□□□ 0.96
VPS29-209ENST00000551655 MSH5O43196 834 aa21.04■□□□□ 0.96
VPS29-209ENST00000551655 WWC3Q9ULE0 1092 aa21.04■□□□□ 0.96
VPS29-209ENST00000551655 DOT1LQ8TEK3 1739 aa21.04■□□□□ 0.96
VPS29-209ENST00000551655 LTN1O94822 1766 aa21.02■□□□□ 0.96
VPS29-209ENST00000551655 COL23A1Q86Y22 540 aaPredicted RBP21.02■□□□□ 0.96
VPS29-209ENST00000551655 DDX54Q8TDD1 881 aaKnown RBP21.01■□□□□ 0.95
VPS29-209ENST00000551655 SYTL4Q96C24 671 aaPredicted RBP21.01■□□□□ 0.95
VPS29-209ENST00000551655 KIF3CO14782 793 aa21■□□□□ 0.95
VPS29-209ENST00000551655 NSD2O96028 1365 aa20.98■□□□□ 0.95
VPS29-209ENST00000551655 CAPN15O75808 1086 aa20.98■□□□□ 0.95
VPS29-209ENST00000551655 ANKRD24Q8TF21 1146 aa20.98■□□□□ 0.95
VPS29-209ENST00000551655 TTC21AQ8NDW8 1320 aa20.98■□□□□ 0.95
VPS29-209ENST00000551655 PRIM1P49642 420 aaKnown RBP20.97■□□□□ 0.95
VPS29-209ENST00000551655 CCNL1Q9UK58 526 aaPredicted RBP20.96■□□□□ 0.95
VPS29-209ENST00000551655 DNAJC5GQ8N7S2 189 aa20.95■□□□□ 0.94
VPS29-209ENST00000551655 MON2Q7Z3U7 1717 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms