RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 COL5A2P05997 1499 aaPredicted RBP20.95■□□□□ 0.94
PTCH1-217ENST00000548420 GRIN3BO60391 1043 aa20.95■□□□□ 0.94
PTCH1-217ENST00000548420 C14orf93Q9H972 538 aaKnown RBP20.95■□□□□ 0.94
PTCH1-217ENST00000548420 SPATA31E1Q6ZUB1 1445 aa20.95■□□□□ 0.94
PTCH1-217ENST00000548420 KIF3CO14782 793 aa20.94■□□□□ 0.94
PTCH1-217ENST00000548420 ANKRD30BQ9BXX2 1392 aa20.94■□□□□ 0.94
PTCH1-217ENST00000548420 APLP1P51693 650 aa20.93■□□□□ 0.94
PTCH1-217ENST00000548420 CPDO75976 1380 aa20.93■□□□□ 0.94
PTCH1-217ENST00000548420 CRB1P82279 1406 aa20.93■□□□□ 0.94
PTCH1-217ENST00000548420 CFAP70Q5T0N1 1121 aa20.92■□□□□ 0.94
PTCH1-217ENST00000548420 TNS4Q8IZW8 715 aa20.92■□□□□ 0.94
PTCH1-217ENST00000548420 TULP4Q9NRJ4 1543 aa20.92■□□□□ 0.94
PTCH1-217ENST00000548420 POGKQ9P215 609 aa20.9■□□□□ 0.94
PTCH1-217ENST00000548420 AKAP12Q02952 1782 aa20.89■□□□□ 0.93
PTCH1-217ENST00000548420 TOPAZ1Q8N9V7 1692 aa20.89■□□□□ 0.93
PTCH1-217ENST00000548420 MINK1Q8N4C8 1332 aaPredicted RBP20.88■□□□□ 0.93
PTCH1-217ENST00000548420 WNK3Q9BYP7 1800 aa20.87■□□□□ 0.93
PTCH1-217ENST00000548420 WASLO00401 505 aaPredicted RBP20.86■□□□□ 0.93
PTCH1-217ENST00000548420 LRRC4BQ9NT99 713 aa20.86■□□□□ 0.93
PTCH1-217ENST00000548420 USP19O94966 1318 aa20.85■□□□□ 0.93
PTCH1-217ENST00000548420 POLD1P28340 1107 aa20.85■□□□□ 0.93
PTCH1-217ENST00000548420 SLC16A10Q8TF71 515 aa20.84■□□□□ 0.93
PTCH1-217ENST00000548420 AKT1S1Q96B36 256 aa20.83■□□□□ 0.93
PTCH1-217ENST00000548420 PNPLA7Q6ZV29 1317 aa20.82■□□□□ 0.92
PTCH1-217ENST00000548420 JMYQ8N9B5 988 aa20.82■□□□□ 0.92
PTCH1-217ENST00000548420 EIF3AQ14152 1382 aaKnown RBP20.82■□□□□ 0.92
PTCH1-217ENST00000548420 GCP02774 474 aa20.81■□□□□ 0.92
PTCH1-217ENST00000548420 HTRA3P83110 453 aa20.81■□□□□ 0.92
PTCH1-217ENST00000548420 SLC4A1APQ9BWU0 796 aaKnown RBP20.81■□□□□ 0.92
PTCH1-217ENST00000548420 PCNTO95613 3336 aa20.8■□□□□ 0.92
PTCH1-217ENST00000548420 QSER1Q2KHR3 1735 aa20.8■□□□□ 0.92
PTCH1-217ENST00000548420 TUBGCP6Q96RT7 1819 aa20.79■□□□□ 0.92
PTCH1-217ENST00000548420 TOM1L2Q6ZVM7 507 aa20.79■□□□□ 0.92
PTCH1-217ENST00000548420 ABTB2Q8N961 1025 aa20.79■□□□□ 0.92
PTCH1-217ENST00000548420 NHSQ6T4R5 1651 aa20.79■□□□□ 0.92
PTCH1-217ENST00000548420 WDR90Q96KV7 1748 aa20.78■□□□□ 0.92
PTCH1-217ENST00000548420 NUDT16Q96DE0 195 aaKnown RBP20.78■□□□□ 0.92
PTCH1-217ENST00000548420 KLRG1Q96E93 195 aa20.78■□□□□ 0.92
PTCH1-217ENST00000548420 ACSBG1Q96GR2 724 aa20.78■□□□□ 0.92
PTCH1-217ENST00000548420 TRAK1Q9UPV9 953 aa20.78■□□□□ 0.92
PTCH1-217ENST00000548420 COL18A1P39060 1754 aa20.76■□□□□ 0.91
PTCH1-217ENST00000548420 ITSN1Q15811 1721 aa20.75■□□□□ 0.91
PTCH1-217ENST00000548420 POLR3AO14802 1390 aaPredicted RBP20.75■□□□□ 0.91
PTCH1-217ENST00000548420 ZBTB7CA1YPR0 619 aa20.75■□□□□ 0.91
PTCH1-217ENST00000548420 AXIN2Q9Y2T1 843 aa20.75■□□□□ 0.91
PTCH1-217ENST00000548420 ADGRB1O14514 1584 aa20.75■□□□□ 0.91
PTCH1-217ENST00000548420 ACEP12821 1306 aa20.75■□□□□ 0.91
PTCH1-217ENST00000548420 BTAF1O14981 1849 aa20.74■□□□□ 0.91
PTCH1-217ENST00000548420 CDCA7Q9BWT1 371 aaPredicted RBP20.73■□□□□ 0.91
PTCH1-217ENST00000548420 TOMM70O94826 608 aa20.72■□□□□ 0.91
PTCH1-217ENST00000548420 PCDH10Q9P2E7 1040 aa20.72■□□□□ 0.91
PTCH1-217ENST00000548420 WDR17Q8IZU2 1322 aa20.72■□□□□ 0.91
PTCH1-217ENST00000548420 ARHGEF28Q8N1W1 1705 aaKnown RBP20.71■□□□□ 0.91
PTCH1-217ENST00000548420 EXOC5O00471 708 aa20.71■□□□□ 0.91
PTCH1-217ENST00000548420 WWC3Q9ULE0 1092 aa20.71■□□□□ 0.91
PTCH1-217ENST00000548420 NLRP13Q86W25 1043 aa20.7■□□□□ 0.9
PTCH1-217ENST00000548420 USP6P35125 1406 aa20.7■□□□□ 0.9
PTCH1-217ENST00000548420 KCNQ4P56696 695 aa20.69■□□□□ 0.9
PTCH1-217ENST00000548420 BRD4O60885 1362 aaPredicted RBP20.68■□□□□ 0.9
PTCH1-217ENST00000548420 RGPD5Q99666 1765 aa20.67■□□□□ 0.9
PTCH1-217ENST00000548420 CARD10Q9BWT7 1032 aa20.66■□□□□ 0.9
PTCH1-217ENST00000548420 TFCP2L1Q9NZI6 479 aa20.66■□□□□ 0.9
PTCH1-217ENST00000548420 KAT6BQ8WYB5 2073 aa20.66■□□□□ 0.9
PTCH1-217ENST00000548420 TNS2Q63HR2 1409 aa20.65■□□□□ 0.9
PTCH1-217ENST00000548420 PLEKHG3A1L390 1219 aa20.65■□□□□ 0.9
PTCH1-217ENST00000548420 MSL1Q68DK7 614 aa20.63■□□□□ 0.89
PTCH1-217ENST00000548420 CDK19Q9BWU1 502 aa20.63■□□□□ 0.89
PTCH1-217ENST00000548420 CD2APQ9Y5K6 639 aa20.63■□□□□ 0.89
PTCH1-217ENST00000548420 SLIT3O75094 1523 aa20.63■□□□□ 0.89
PTCH1-217ENST00000548420 COL23A1Q86Y22 540 aaPredicted RBP20.62■□□□□ 0.89
PTCH1-217ENST00000548420 NMRK2Q9NPI5 230 aa20.62■□□□□ 0.89
PTCH1-217ENST00000548420 SLC27A3Q5K4L6 730 aa20.6■□□□□ 0.89
PTCH1-217ENST00000548420 CCDC61Q9Y6R9 512 aa20.6■□□□□ 0.89
PTCH1-217ENST00000548420 ABCC6O95255 1503 aa20.58■□□□□ 0.89
PTCH1-217ENST00000548420 TRPM1Q7Z4N2 1603 aa20.58■□□□□ 0.89
PTCH1-217ENST00000548420 HSPA1AP0DMV8 641 aaKnown RBP20.58■□□□□ 0.89
PTCH1-217ENST00000548420 HSPA1BP0DMV9 641 aaKnown RBP20.58■□□□□ 0.89
PTCH1-217ENST00000548420 PPIP5K1Q6PFW1 1433 aa20.56■□□□□ 0.88
PTCH1-217ENST00000548420 NLRP6P59044 892 aa20.56■□□□□ 0.88
PTCH1-217ENST00000548420 RBM46Q8TBY0 533 aaKnown RBP20.56■□□□□ 0.88
PTCH1-217ENST00000548420 IGSF1Q8N6C5 1336 aa20.55■□□□□ 0.88
PTCH1-217ENST00000548420 CPSF1Q10570 1443 aaKnown RBP20.55■□□□□ 0.88
PTCH1-217ENST00000548420 CSB-PGBD3P0DP91 1061 aa20.55■□□□□ 0.88
PTCH1-217ENST00000548420 ARHGEF25Q86VW2 580 aa20.55■□□□□ 0.88
PTCH1-217ENST00000548420 MSH5O43196 834 aa20.54■□□□□ 0.88
PTCH1-217ENST00000548420 MPHOSPH9Q99550 1183 aa20.54■□□□□ 0.88
PTCH1-217ENST00000548420 CICQ96RK0 1608 aaPredicted RBP20.53■□□□□ 0.88
PTCH1-217ENST00000548420 CCDC7Q96M83 1385 aa20.53■□□□□ 0.88
PTCH1-217ENST00000548420 RAB3GAP2Q9H2M9 1393 aa20.51■□□□□ 0.87
PTCH1-217ENST00000548420 LY75O60449 1722 aa20.5■□□□□ 0.87
PTCH1-217ENST00000548420 FSTL1Q12841 308 aa20.48■□□□□ 0.87
PTCH1-217ENST00000548420 PIK3C2AO00443 1686 aa20.48■□□□□ 0.87
PTCH1-217ENST00000548420 NSD2O96028 1365 aa20.45■□□□□ 0.86
PTCH1-217ENST00000548420 SOX12O15370 315 aa20.43■□□□□ 0.86
PTCH1-217ENST00000548420 IL2RBP14784 551 aa20.43■□□□□ 0.86
PTCH1-217ENST00000548420 FAM161AQ3B820 660 aa20.43■□□□□ 0.86
PTCH1-217ENST00000548420 CCNL1Q9UK58 526 aaPredicted RBP20.42■□□□□ 0.86
PTCH1-217ENST00000548420 PRIM1P49642 420 aaKnown RBP20.41■□□□□ 0.86
PTCH1-217ENST00000548420 C16orf71Q8IYS4 520 aaPredicted RBP20.4■□□□□ 0.86
PTCH1-217ENST00000548420 AMIGO3Q86WK7 504 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms