RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 NWD2Q9ULI1 1742 aa31.44■■■□□ 2.62
SMARCD1-203ENST00000547247 COL18A1P39060 1754 aa31.44■■■□□ 2.62
SMARCD1-203ENST00000547247 IP6K1Q92551 441 aa31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 MAP2P11137 1827 aaKnown RBP31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 BCL9LQ86UU0 1499 aa31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 KIF24Q5T7B8 1368 aa31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 CAMTA1Q9Y6Y1 1673 aa31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 AXIN2Q9Y2T1 843 aa31.43■■■□□ 2.62
SMARCD1-203ENST00000547247 UNC5CLQ8IV45 518 aa31.42■■■□□ 2.62
SMARCD1-203ENST00000547247 RTL1A6NKG5 1358 aa31.41■■■□□ 2.62
SMARCD1-203ENST00000547247 PPM1GO15355 546 aaPredicted RBP31.41■■■□□ 2.62
SMARCD1-203ENST00000547247 HOXC9P31274 260 aa31.41■■■□□ 2.62
SMARCD1-203ENST00000547247 QTRT2Q9H974 415 aaKnown RBP31.4■■■□□ 2.62
SMARCD1-203ENST00000547247 FLT4P35916 1363 aa31.39■■■□□ 2.62
SMARCD1-203ENST00000547247 PARD3Q8TEW0 1356 aa31.39■■■□□ 2.62
SMARCD1-203ENST00000547247 EVA1CP58658 441 aa31.39■■■□□ 2.61
SMARCD1-203ENST00000547247 BLMP54132 1417 aaPredicted RBP31.38■■■□□ 2.61
SMARCD1-203ENST00000547247 RALBP1Q15311 655 aa31.38■■■□□ 2.61
SMARCD1-203ENST00000547247 STRN4Q9NRL3 753 aa31.37■■■□□ 2.61
SMARCD1-203ENST00000547247 TRPC5Q9UL62 973 aaPredicted RBP31.37■■■□□ 2.61
SMARCD1-203ENST00000547247 NRAPQ86VF7 1730 aa31.37■■■□□ 2.61
SMARCD1-203ENST00000547247 PEAK1Q9H792 1746 aa31.36■■■□□ 2.61
SMARCD1-203ENST00000547247 COL5A2P05997 1499 aaPredicted RBP31.36■■■□□ 2.61
SMARCD1-203ENST00000547247 ATRNO75882 1429 aa31.36■■■□□ 2.61
SMARCD1-203ENST00000547247 SMG6Q86US8 1419 aaKnown RBP31.36■■■□□ 2.61
SMARCD1-203ENST00000547247 RGPD5Q99666 1765 aa31.35■■■□□ 2.61
SMARCD1-203ENST00000547247 RXRBP28702 533 aa31.34■■■□□ 2.61
SMARCD1-203ENST00000547247 MTHFSP49914 203 aa31.34■■■□□ 2.61
SMARCD1-203ENST00000547247 HSP90AB2PQ58FF8 381 aa31.34■■■□□ 2.61
SMARCD1-203ENST00000547247 PPP2R1AP30153 589 aa31.33■■■□□ 2.61
SMARCD1-203ENST00000547247 INSRP06213 1382 aa31.32■■■□□ 2.61
SMARCD1-203ENST00000547247 PRKRIP1Q9H875 184 aaPredicted RBP31.32■■■□□ 2.6
SMARCD1-203ENST00000547247 ERBB3P21860 1342 aa31.31■■■□□ 2.6
SMARCD1-203ENST00000547247 ANKRD24Q8TF21 1146 aa31.31■■■□□ 2.6
SMARCD1-203ENST00000547247 CSB-PGBD3P0DP91 1061 aa31.3■■■□□ 2.6
SMARCD1-203ENST00000547247 RBM6P78332 1123 aaKnown RBP31.3■■■□□ 2.6
SMARCD1-203ENST00000547247 VPS72Q15906 364 aa31.3■■■□□ 2.6
SMARCD1-203ENST00000547247 WDR17Q8IZU2 1322 aa31.3■■■□□ 2.6
SMARCD1-203ENST00000547247 LARP1Q6PKG0 1096 aaKnown RBP31.3■■■□□ 2.6
SMARCD1-203ENST00000547247 LTV1Q96GA3 475 aaPredicted RBP31.3■■■□□ 2.6
SMARCD1-203ENST00000547247 CDK12Q9NYV4 1490 aaPredicted RBP31.29■■■□□ 2.6
SMARCD1-203ENST00000547247 CCDC9Q9Y3X0 531 aaKnown RBP31.29■■■□□ 2.6
SMARCD1-203ENST00000547247 ANP32CO43423 234 aa31.26■■■□□ 2.6
SMARCD1-203ENST00000547247 TOM1L2Q6ZVM7 507 aa31.26■■■□□ 2.6
SMARCD1-203ENST00000547247 GJD4Q96KN9 370 aaPredicted RBP31.25■■■□□ 2.59
SMARCD1-203ENST00000547247 CRB1P82279 1406 aa31.25■■■□□ 2.59
SMARCD1-203ENST00000547247 GLI3P10071 1580 aa31.25■■■□□ 2.59
SMARCD1-203ENST00000547247 MYBBP1AQ9BQG0 1328 aaKnown RBP31.24■■■□□ 2.59
SMARCD1-203ENST00000547247 SPATA31A5Q5VU36 1347 aa31.24■■■□□ 2.59
SMARCD1-203ENST00000547247 SPATA31A7Q8IWB4 1347 aa31.24■■■□□ 2.59
SMARCD1-203ENST00000547247 NLRP2Q9NX02 1062 aa31.22■■■□□ 2.59
SMARCD1-203ENST00000547247 SPATA31A1Q5TZJ5 1347 aa31.21■■■□□ 2.59
SMARCD1-203ENST00000547247 EIF4A2Q14240 407 aaKnown RBP31.21■■■□□ 2.59
SMARCD1-203ENST00000547247 CFAP53Q96M91 514 aa31.21■■■□□ 2.59
SMARCD1-203ENST00000547247 CARD10Q9BWT7 1032 aa31.21■■■□□ 2.59
SMARCD1-203ENST00000547247 USP35Q9P2H5 1018 aa31.21■■■□□ 2.59
SMARCD1-203ENST00000547247 RGS12O14924 1447 aa31.2■■■□□ 2.59
SMARCD1-203ENST00000547247 FAM208AQ9UK61 1670 aaKnown RBP31.19■■■□□ 2.58
SMARCD1-203ENST00000547247 TCP11L2Q8N4U5 519 aa31.17■■■□□ 2.58
SMARCD1-203ENST00000547247 DIAPH1O60610 1272 aaKnown RBP31.16■■■□□ 2.58
SMARCD1-203ENST00000547247 NBPF6Q5VWK0 638 aa31.16■■■□□ 2.58
SMARCD1-203ENST00000547247 NBPF4Q96M43 638 aa31.16■■■□□ 2.58
SMARCD1-203ENST00000547247 THRAP3Q9Y2W1 955 aaKnown RBP31.16■■■□□ 2.58
SMARCD1-203ENST00000547247 DIEXFQ68CQ4 756 aaKnown RBP31.15■■■□□ 2.58
SMARCD1-203ENST00000547247 IL13P35225 146 aa31.14■■■□□ 2.58
SMARCD1-203ENST00000547247 COL3A1P02461 1466 aaPredicted RBP31.13■■■□□ 2.57
SMARCD1-203ENST00000547247 RGPD2P0DJD1 1756 aa31.13■■■□□ 2.57
SMARCD1-203ENST00000547247 EYA1Q99502 592 aa31.13■■■□□ 2.57
SMARCD1-203ENST00000547247 FAM98CQ17RN3 349 aaKnown RBP31.11■■■□□ 2.57
SMARCD1-203ENST00000547247 BARGINQ6ZT62 677 aa31.11■■■□□ 2.57
SMARCD1-203ENST00000547247 SOCS7O14512 581 aa31.1■■■□□ 2.57
SMARCD1-203ENST00000547247 USHBP1Q8N6Y0 703 aa31.09■■■□□ 2.57
SMARCD1-203ENST00000547247 ONECUT3O60422 494 aaPredicted RBP31.08■■■□□ 2.57
SMARCD1-203ENST00000547247 IGSF1Q8N6C5 1336 aa31.07■■■□□ 2.56
SMARCD1-203ENST00000547247 NUDCQ9Y266 331 aa31.07■■■□□ 2.56
SMARCD1-203ENST00000547247 BRWD3Q6RI45 1802 aa31.05■■■□□ 2.56
SMARCD1-203ENST00000547247 CDCA7Q9BWT1 371 aaPredicted RBP31.05■■■□□ 2.56
SMARCD1-203ENST00000547247 A0A0G2JS52 829 aa31.05■■■□□ 2.56
SMARCD1-203ENST00000547247 MYT1Q01538 1121 aa31.05■■■□□ 2.56
SMARCD1-203ENST00000547247 NCAPD2Q15021 1401 aa31.04■■■□□ 2.56
SMARCD1-203ENST00000547247 U2SURPO15042 1029 aaKnown RBP31.04■■■□□ 2.56
SMARCD1-203ENST00000547247 IL2RBP14784 551 aa31.04■■■□□ 2.56
SMARCD1-203ENST00000547247 RGPD1P0DJD0 1748 aa31.02■■■□□ 2.56
SMARCD1-203ENST00000547247 SEPT12Q8IYM1 358 aa31.02■■■□□ 2.56
SMARCD1-203ENST00000547247 DISP2A7MBM2 1401 aa31.02■■■□□ 2.56
SMARCD1-203ENST00000547247 RAPGEF4Q8WZA2 1011 aa31.01■■■□□ 2.56
SMARCD1-203ENST00000547247 THSD7AQ9UPZ6 1657 aa31.01■■■□□ 2.55
SMARCD1-203ENST00000547247 SULT6B1Q6IMI4 303 aa31■■■□□ 2.55
SMARCD1-203ENST00000547247 WNK3Q9BYP7 1800 aa30.99■■■□□ 2.55
SMARCD1-203ENST00000547247 TATP17735 454 aaPredicted RBP30.97■■■□□ 2.55
SMARCD1-203ENST00000547247 AEBP1Q8IUX7 1158 aa30.97■■■□□ 2.55
SMARCD1-203ENST00000547247 KDRP35968 1356 aa30.97■■■□□ 2.55
SMARCD1-203ENST00000547247 HMOX1P09601 288 aa30.96■■■□□ 2.55
SMARCD1-203ENST00000547247 U2AF1L5P0DN76 240 aaPredicted RBP30.96■■■□□ 2.55
SMARCD1-203ENST00000547247 U2AF1Q01081 240 aaKnown RBP eCLIP30.96■■■□□ 2.55
SMARCD1-203ENST00000547247 MEGF6O75095 1541 aa30.96■■■□□ 2.55
SMARCD1-203ENST00000547247 DDB1Q16531 1140 aa30.95■■■□□ 2.54
SMARCD1-203ENST00000547247 CCDC184Q52MB2 194 aa30.95■■■□□ 2.54
SMARCD1-203ENST00000547247 PARP4Q9UKK3 1724 aaKnown RBP30.94■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms