RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 CAMSAP1Q5T5Y3 1602 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 CFAP74Q9C0B2 1584 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 IRX5P78411 483 aaPredicted RBP13.97□□□□□ -0.17
CDH4-201ENST00000543233 SASS6Q6UVJ0 657 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 HDGFL2Q7Z4V5 671 aaPredicted RBP13.97□□□□□ -0.17
CDH4-201ENST00000543233 CNPY4Q8N129 248 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 CHMP4CQ96CF2 233 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 MAPK8IP3Q9UPT6 1336 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 GLI2P10070 1586 aa13.97□□□□□ -0.17
CDH4-201ENST00000543233 SAMD1Q6SPF0 538 aaPredicted RBP13.97□□□□□ -0.17
CDH4-201ENST00000543233 PPLO60437 1756 aa13.96□□□□□ -0.17
CDH4-201ENST00000543233 SOX12O15370 315 aa13.96□□□□□ -0.17
CDH4-201ENST00000543233 RLBP1P12271 317 aa13.96□□□□□ -0.17
CDH4-201ENST00000543233 CHMP5Q9NZZ3 219 aa13.96□□□□□ -0.17
CDH4-201ENST00000543233 IFT172Q9UG01 1749 aa13.96□□□□□ -0.17
CDH4-201ENST00000543233 TULP4Q9NRJ4 1543 aa13.96□□□□□ -0.17
CDH4-201ENST00000543233 HMOX1P09601 288 aa13.96□□□□□ -0.18
CDH4-201ENST00000543233 KDM2BQ8NHM5 1336 aa13.96□□□□□ -0.18
CDH4-201ENST00000543233 RARSP54136 660 aaKnown RBP13.95□□□□□ -0.18
CDH4-201ENST00000543233 ZRANB1Q9UGI0 708 aa13.95□□□□□ -0.18
CDH4-201ENST00000543233 FAM177BA6PVY3 158 aa13.95□□□□□ -0.18
CDH4-201ENST00000543233 NEXMIFQ5QGS0 1516 aa13.95□□□□□ -0.18
CDH4-201ENST00000543233 ATP2B3Q16720 1220 aa13.95□□□□□ -0.18
CDH4-201ENST00000543233 CSPP1Q1MSJ5 1256 aa13.94□□□□□ -0.18
CDH4-201ENST00000543233 YTHDC2Q9H6S0 1430 aaKnown RBP13.94□□□□□ -0.18
CDH4-201ENST00000543233 USP19O94966 1318 aa13.94□□□□□ -0.18
CDH4-201ENST00000543233 KIF13AQ9H1H9 1805 aa13.94□□□□□ -0.18
CDH4-201ENST00000543233 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.93□□□□□ -0.18
CDH4-201ENST00000543233 EXOSC9Q06265 439 aaKnown RBP13.93□□□□□ -0.18
CDH4-201ENST00000543233 SETBP1Q9Y6X0 1596 aa13.93□□□□□ -0.18
CDH4-201ENST00000543233 CHRM1P11229 460 aaPredicted RBP13.93□□□□□ -0.18
CDH4-201ENST00000543233 DNAJC2Q99543 621 aaKnown RBP13.93□□□□□ -0.18
CDH4-201ENST00000543233 THUMPD2Q9BTF0 503 aaKnown RBP13.93□□□□□ -0.18
CDH4-201ENST00000543233 NEURL4Q96JN8 1562 aa13.92□□□□□ -0.18
CDH4-201ENST00000543233 ELL2O00472 640 aaPredicted RBP13.92□□□□□ -0.18
CDH4-201ENST00000543233 DIAPH1O60610 1272 aaKnown RBP13.92□□□□□ -0.18
CDH4-201ENST00000543233 SMC4Q9NTJ3 1288 aa13.92□□□□□ -0.18
CDH4-201ENST00000543233 TRIM6-TRIM34B2RNG4 842 aa13.91□□□□□ -0.18
CDH4-201ENST00000543233 TMPOP42166 694 aaKnown RBP13.91□□□□□ -0.18
CDH4-201ENST00000543233 TRIM34Q9BYJ4 488 aa13.91□□□□□ -0.18
CDH4-201ENST00000543233 PIK3C2BO00750 1634 aa13.91□□□□□ -0.18
CDH4-201ENST00000543233 HDAC5Q9UQL6 1122 aa13.91□□□□□ -0.18
CDH4-201ENST00000543233 EMILIN1Q9Y6C2 1016 aa13.91□□□□□ -0.18
CDH4-201ENST00000543233 NME9Q86XW9 330 aa13.9□□□□□ -0.18
CDH4-201ENST00000543233 CEBPAP49715 358 aaPredicted RBP13.9□□□□□ -0.18
CDH4-201ENST00000543233 TRERF1Q96PN7 1200 aa13.9□□□□□ -0.18
CDH4-201ENST00000543233 MYO5BQ9ULV0 1848 aa13.9□□□□□ -0.18
CDH4-201ENST00000543233 RRS1Q15050 365 aaKnown RBP13.9□□□□□ -0.18
CDH4-201ENST00000543233 PPP1R9BQ96SB3 815 aa13.9□□□□□ -0.18
CDH4-201ENST00000543233 PCDHB15Q9Y5E8 787 aa13.9□□□□□ -0.18
CDH4-201ENST00000543233 PRKAR2BP31323 418 aa13.89□□□□□ -0.19
CDH4-201ENST00000543233 RNF216Q9NWF9 866 aaPredicted RBP13.89□□□□□ -0.19
CDH4-201ENST00000543233 ARHGAP31Q2M1Z3 1444 aa13.89□□□□□ -0.19
CDH4-201ENST00000543233 ATAD2Q6PL18 1390 aa13.89□□□□□ -0.19
CDH4-201ENST00000543233 MYCNP04198 464 aaPredicted RBP13.89□□□□□ -0.19
CDH4-201ENST00000543233 WDR63Q8IWG1 891 aa13.89□□□□□ -0.19
CDH4-201ENST00000543233 NGEFQ8N5V2 710 aa13.89□□□□□ -0.19
CDH4-201ENST00000543233 PDE3AQ14432 1141 aa13.88□□□□□ -0.19
CDH4-201ENST00000543233 RICTORQ6R327 1708 aa13.88□□□□□ -0.19
CDH4-201ENST00000543233 MYO3AQ8NEV4 1616 aa13.88□□□□□ -0.19
CDH4-201ENST00000543233 ABCC11Q96J66 1382 aa13.88□□□□□ -0.19
CDH4-201ENST00000543233 PTMAP06454 111 aaKnown RBP13.88□□□□□ -0.19
CDH4-201ENST00000543233 KCNG1Q9UIX4 513 aa13.88□□□□□ -0.19
CDH4-201ENST00000543233 PATL2C9JE40 543 aaKnown RBP13.87□□□□□ -0.19
CDH4-201ENST00000543233 ITPRIPQ8IWB1 547 aa13.87□□□□□ -0.19
CDH4-201ENST00000543233 ZNF500O60304 480 aaPredicted RBP13.87□□□□□ -0.19
CDH4-201ENST00000543233 NOL7Q9UMY1 257 aaKnown RBP13.87□□□□□ -0.19
CDH4-201ENST00000543233 TRIM35Q9UPQ4 493 aa13.87□□□□□ -0.19
CDH4-201ENST00000543233 SSH1Q8WYL5 1049 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 SLC26A8Q96RN1 970 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 RIMS2Q9UQ26 1411 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 ARHGEF28Q8N1W1 1705 aaKnown RBP13.86□□□□□ -0.19
CDH4-201ENST00000543233 PTPRMP28827 1452 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 PHACTR3Q96KR7 559 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 GBP4Q96PP9 640 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 POLKQ9UBT6 870 aa13.86□□□□□ -0.19
CDH4-201ENST00000543233 PDCL2Q8N4E4 241 aa13.85□□□□□ -0.19
CDH4-201ENST00000543233 U2AF2P26368 475 aaKnown RBP eCLIP13.85□□□□□ -0.19
CDH4-201ENST00000543233 TNNT3P45378 269 aaPredicted RBP13.85□□□□□ -0.19
CDH4-201ENST00000543233 METP08581 1390 aa13.85□□□□□ -0.19
CDH4-201ENST00000543233 ZKSCAN2Q63HK3 967 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 PLEKHF1Q96S99 279 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 PHF23Q9BUL5 403 aaPredicted RBP13.84□□□□□ -0.19
CDH4-201ENST00000543233 HSCBQ8IWL3 235 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 DZIP1LQ8IYY4 767 aaKnown RBP13.84□□□□□ -0.19
CDH4-201ENST00000543233 NUDT16Q96DE0 195 aaKnown RBP13.84□□□□□ -0.19
CDH4-201ENST00000543233 PUS7Q96PZ0 661 aaKnown RBP13.84□□□□□ -0.19
CDH4-201ENST00000543233 ZKSCAN5Q9Y2L8 839 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 NSD2O96028 1365 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 ZC3H13Q5T200 1668 aaKnown RBP13.84□□□□□ -0.19
CDH4-201ENST00000543233 CCDC66A2RUB6 948 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 ZNF710Q8N1W2 664 aa13.84□□□□□ -0.19
CDH4-201ENST00000543233 NOB1Q9ULX3 412 aaKnown RBP13.84□□□□□ -0.19
CDH4-201ENST00000543233 ERICH4A6NGS2 130 aa13.83□□□□□ -0.2
CDH4-201ENST00000543233 WASLO00401 505 aaPredicted RBP13.83□□□□□ -0.2
CDH4-201ENST00000543233 FOXD4L1Q9NU39 408 aa13.83□□□□□ -0.2
CDH4-201ENST00000543233 PREX1Q8TCU6 1659 aa13.83□□□□□ -0.2
CDH4-201ENST00000543233 DCTN1Q14203 1278 aa13.83□□□□□ -0.2
CDH4-201ENST00000543233 TMEM131LA2VDJ0 1609 aa13.83□□□□□ -0.2
CDH4-201ENST00000543233 TRIM27P14373 513 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms