RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 FYB1O15117 783 aa17.1■□□□□ 0.33
VPS33A-207ENST00000542790 SOX12O15370 315 aa17.1■□□□□ 0.33
VPS33A-207ENST00000542790 PANK3Q9H999 370 aa17.1■□□□□ 0.33
VPS33A-207ENST00000542790 NRKQ7Z2Y5 1582 aa17.1■□□□□ 0.33
VPS33A-207ENST00000542790 MON2Q7Z3U7 1717 aa17.1■□□□□ 0.33
VPS33A-207ENST00000542790 VPS72Q15906 364 aa17.09■□□□□ 0.33
VPS33A-207ENST00000542790 POTEHQ6S545 545 aa17.09■□□□□ 0.33
VPS33A-207ENST00000542790 ARHGEF25Q86VW2 580 aa17.09■□□□□ 0.33
VPS33A-207ENST00000542790 GJD4Q96KN9 370 aaPredicted RBP17.09■□□□□ 0.33
VPS33A-207ENST00000542790 SLIT3O75094 1523 aa17.09■□□□□ 0.33
VPS33A-207ENST00000542790 PIK3C2AO00443 1686 aa17.09■□□□□ 0.33
VPS33A-207ENST00000542790 ATRNO75882 1429 aa17.08■□□□□ 0.32
VPS33A-207ENST00000542790 ZBTB7CA1YPR0 619 aa17.08■□□□□ 0.32
VPS33A-207ENST00000542790 ABCA3Q99758 1704 aa17.07■□□□□ 0.32
VPS33A-207ENST00000542790 NSD3Q9BZ95 1437 aa17.07■□□□□ 0.32
VPS33A-207ENST00000542790 AATKQ6ZMQ8 1374 aa17.07■□□□□ 0.32
VPS33A-207ENST00000542790 EVA1CP58658 441 aa17.07■□□□□ 0.32
VPS33A-207ENST00000542790 GGNBP2Q9H3C7 697 aa17.07■□□□□ 0.32
VPS33A-207ENST00000542790 CCDC9Q9Y3X0 531 aaKnown RBP17.07■□□□□ 0.32
VPS33A-207ENST00000542790 OVOS2A0A0J9YW53 1432 aa17.06■□□□□ 0.32
VPS33A-207ENST00000542790 OVOS2Q6IE36 1432 aa17.06■□□□□ 0.32
VPS33A-207ENST00000542790 CGNL1Q0VF96 1302 aa17.06■□□□□ 0.32
VPS33A-207ENST00000542790 CRYBG1Q9Y4K1 1723 aa17.06■□□□□ 0.32
VPS33A-207ENST00000542790 PHRF1Q9P1Y6 1649 aaKnown RBP17.06■□□□□ 0.32
VPS33A-207ENST00000542790 CCDC7Q96M83 1385 aa17.05■□□□□ 0.32
VPS33A-207ENST00000542790 WASHC2AQ641Q2 1341 aa17.05■□□□□ 0.32
VPS33A-207ENST00000542790 STRN4Q9NRL3 753 aa17.05■□□□□ 0.32
VPS33A-207ENST00000542790 COL14A1Q05707 1796 aaKnown RBP17.05■□□□□ 0.32
VPS33A-207ENST00000542790 MARF1Q9Y4F3 1742 aaKnown RBP17.04■□□□□ 0.32
VPS33A-207ENST00000542790 KNSTRNQ9Y448 316 aa17.03■□□□□ 0.32
VPS33A-207ENST00000542790 CDK12Q9NYV4 1490 aaPredicted RBP17.03■□□□□ 0.32
VPS33A-207ENST00000542790 MYOM1P52179 1685 aa17.02■□□□□ 0.32
VPS33A-207ENST00000542790 AXIN2Q9Y2T1 843 aa17.02■□□□□ 0.32
VPS33A-207ENST00000542790 SPATA31A5Q5VU36 1347 aa17.01■□□□□ 0.31
VPS33A-207ENST00000542790 SPATA31A7Q8IWB4 1347 aa17.01■□□□□ 0.31
VPS33A-207ENST00000542790 SPDYE1Q8NFV5 336 aaPredicted RBP17.01■□□□□ 0.31
VPS33A-207ENST00000542790 NFAT5O94916 1531 aa17.01■□□□□ 0.31
VPS33A-207ENST00000542790 LARP1Q6PKG0 1096 aaKnown RBP17■□□□□ 0.31
VPS33A-207ENST00000542790 NWD2Q9ULI1 1742 aa17■□□□□ 0.31
VPS33A-207ENST00000542790 CAMTA1Q9Y6Y1 1673 aa17■□□□□ 0.31
VPS33A-207ENST00000542790 ONECUT3O60422 494 aaPredicted RBP16.99■□□□□ 0.31
VPS33A-207ENST00000542790 CLEC11AQ9Y240 323 aa16.99■□□□□ 0.31
VPS33A-207ENST00000542790 PLCH1Q4KWH8 1693 aa16.99■□□□□ 0.31
VPS33A-207ENST00000542790 SPATA31A1Q5TZJ5 1347 aa16.98■□□□□ 0.31
VPS33A-207ENST00000542790 USP54Q70EL1 1684 aa16.98■□□□□ 0.31
VPS33A-207ENST00000542790 SOCS7O14512 581 aa16.98■□□□□ 0.31
VPS33A-207ENST00000542790 AMPHP49418 695 aa16.98■□□□□ 0.31
VPS33A-207ENST00000542790 IP6K1Q92551 441 aa16.98■□□□□ 0.31
VPS33A-207ENST00000542790 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.98■□□□□ 0.31
VPS33A-207ENST00000542790 COL5A2P05997 1499 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-207ENST00000542790 MAP3K19Q56UN5 1328 aa16.97■□□□□ 0.31
VPS33A-207ENST00000542790 PER1O15534 1290 aaPredicted RBP16.97■□□□□ 0.31
VPS33A-207ENST00000542790 CSB-PGBD3P0DP91 1061 aa16.97■□□□□ 0.31
VPS33A-207ENST00000542790 FBLN1P23142 703 aa16.97■□□□□ 0.31
VPS33A-207ENST00000542790 TOM1L2Q6ZVM7 507 aa16.97■□□□□ 0.31
VPS33A-207ENST00000542790 USP35Q9P2H5 1018 aa16.97■□□□□ 0.31
VPS33A-207ENST00000542790 NSD2O96028 1365 aa16.97■□□□□ 0.31
VPS33A-207ENST00000542790 WDR17Q8IZU2 1322 aa16.96■□□□□ 0.31
VPS33A-207ENST00000542790 RGS12O14924 1447 aa16.96■□□□□ 0.31
VPS33A-207ENST00000542790 RRS1Q15050 365 aaKnown RBP16.96■□□□□ 0.31
VPS33A-207ENST00000542790 FAM98CQ17RN3 349 aaKnown RBP16.96■□□□□ 0.31
VPS33A-207ENST00000542790 SEPT12Q8IYM1 358 aa16.96■□□□□ 0.31
VPS33A-207ENST00000542790 THRAP3Q9Y2W1 955 aaKnown RBP16.96■□□□□ 0.31
VPS33A-207ENST00000542790 LMO7Q8WWI1 1683 aa16.95■□□□□ 0.3
VPS33A-207ENST00000542790 TCP11L2Q8N4U5 519 aa16.95■□□□□ 0.3
VPS33A-207ENST00000542790 ABCC6O95255 1503 aa16.95■□□□□ 0.3
VPS33A-207ENST00000542790 CRB1P82279 1406 aa16.95■□□□□ 0.3
VPS33A-207ENST00000542790 A0A0G2JS52 829 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 HOXC9P31274 260 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 MYT1Q01538 1121 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 AMER1Q5JTC6 1135 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-207ENST00000542790 BARGINQ6ZT62 677 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 MORC1Q86VD1 984 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 PIP4P2Q8N4L2 257 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 BLMP54132 1417 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-207ENST00000542790 ERBB3P21860 1342 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 GLI3P10071 1580 aa16.94■□□□□ 0.3
VPS33A-207ENST00000542790 NRAPQ86VF7 1730 aa16.93■□□□□ 0.3
VPS33A-207ENST00000542790 ANKRD24Q8TF21 1146 aa16.93■□□□□ 0.3
VPS33A-207ENST00000542790 CARD10Q9BWT7 1032 aa16.93■□□□□ 0.3
VPS33A-207ENST00000542790 RTL1A6NKG5 1358 aa16.92■□□□□ 0.3
VPS33A-207ENST00000542790 KIF24Q5T7B8 1368 aa16.92■□□□□ 0.3
VPS33A-207ENST00000542790 TNNT2P45379 298 aaPredicted RBP16.92■□□□□ 0.3
VPS33A-207ENST00000542790 FXR2P51116 673 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS33A-207ENST00000542790 NLRP2Q9NX02 1062 aa16.91■□□□□ 0.3
VPS33A-207ENST00000542790 COL18A1P39060 1754 aa16.9■□□□□ 0.3
VPS33A-207ENST00000542790 PPM1GO15355 546 aaPredicted RBP16.9■□□□□ 0.3
VPS33A-207ENST00000542790 LTV1Q96GA3 475 aaPredicted RBP16.9■□□□□ 0.3
VPS33A-207ENST00000542790 POLKQ9UBT6 870 aa16.9■□□□□ 0.3
VPS33A-207ENST00000542790 EMILIN1Q9Y6C2 1016 aa16.9■□□□□ 0.3
VPS33A-207ENST00000542790 FLT4P35916 1363 aa16.89■□□□□ 0.3
VPS33A-207ENST00000542790 KRT27Q7Z3Y8 459 aa16.89■□□□□ 0.29
VPS33A-207ENST00000542790 CDCA7Q9BWT1 371 aaPredicted RBP16.89■□□□□ 0.29
VPS33A-207ENST00000542790 NPC1L1Q9UHC9 1359 aa16.89■□□□□ 0.29
VPS33A-207ENST00000542790 HSP90AB2PQ58FF8 381 aa16.88■□□□□ 0.29
VPS33A-207ENST00000542790 CC2D1BQ5T0F9 858 aaKnown RBP16.88■□□□□ 0.29
VPS33A-207ENST00000542790 INSRP06213 1382 aa16.88■□□□□ 0.29
VPS33A-207ENST00000542790 KIF20BQ96Q89 1820 aa16.87■□□□□ 0.29
VPS33A-207ENST00000542790 SMG6Q86US8 1419 aaKnown RBP16.86■□□□□ 0.29
VPS33A-207ENST00000542790 PDE3BQ13370 1112 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms