RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 AXIN2Q9Y2T1 843 aa25.81■■□□□ 1.72
CLSTN3-214ENST00000542663 DDB1Q16531 1140 aa25.8■■□□□ 1.72
CLSTN3-214ENST00000542663 TOM1L2Q6ZVM7 507 aa25.79■■□□□ 1.72
CLSTN3-214ENST00000542663 ANO8Q9HCE9 1232 aaPredicted RBP25.79■■□□□ 1.72
CLSTN3-214ENST00000542663 CPSF1Q10570 1443 aaKnown RBP25.79■■□□□ 1.72
CLSTN3-214ENST00000542663 YY1P25490 414 aa25.78■■□□□ 1.72
CLSTN3-214ENST00000542663 WDR17Q8IZU2 1322 aa25.78■■□□□ 1.72
CLSTN3-214ENST00000542663 NINLQ9Y2I6 1382 aa25.78■■□□□ 1.72
CLSTN3-214ENST00000542663 MYOM1P52179 1685 aa25.77■■□□□ 1.72
CLSTN3-214ENST00000542663 PPP1R1BQ9UD71 204 aaPredicted RBP25.77■■□□□ 1.72
CLSTN3-214ENST00000542663 MARCH10Q8NA82 808 aaPredicted RBP25.76■■□□□ 1.71
CLSTN3-214ENST00000542663 BCL11BQ9C0K0 894 aaPredicted RBP25.76■■□□□ 1.71
CLSTN3-214ENST00000542663 BCL9O00512 1426 aa25.76■■□□□ 1.71
CLSTN3-214ENST00000542663 MON2Q7Z3U7 1717 aa25.76■■□□□ 1.71
CLSTN3-214ENST00000542663 NFAT5O94916 1531 aa25.75■■□□□ 1.71
CLSTN3-214ENST00000542663 PROM2Q8N271 834 aa25.74■■□□□ 1.71
CLSTN3-214ENST00000542663 ARHGEF25Q86VW2 580 aa25.73■■□□□ 1.71
CLSTN3-214ENST00000542663 PDGFDQ9GZP0 370 aaPredicted RBP25.73■■□□□ 1.71
CLSTN3-214ENST00000542663 LTN1O94822 1766 aa25.72■■□□□ 1.71
CLSTN3-214ENST00000542663 EVC2Q86UK5 1308 aa25.72■■□□□ 1.71
CLSTN3-214ENST00000542663 USP54Q70EL1 1684 aa25.72■■□□□ 1.71
CLSTN3-214ENST00000542663 NHSQ6T4R5 1651 aa25.71■■□□□ 1.71
CLSTN3-214ENST00000542663 TTC21BQ7Z4L5 1316 aa25.71■■□□□ 1.71
CLSTN3-214ENST00000542663 L3MBTL2Q969R5 705 aa25.7■■□□□ 1.7
CLSTN3-214ENST00000542663 CDCA7Q9BWT1 371 aaPredicted RBP25.7■■□□□ 1.7
CLSTN3-214ENST00000542663 ABCC6O95255 1503 aa25.69■■□□□ 1.7
CLSTN3-214ENST00000542663 CARD10Q9BWT7 1032 aa25.68■■□□□ 1.7
CLSTN3-214ENST00000542663 KCNH5Q8NCM2 988 aa25.67■■□□□ 1.7
CLSTN3-214ENST00000542663 ZNF692Q9BU19 519 aaPredicted RBP25.67■■□□□ 1.7
CLSTN3-214ENST00000542663 SOX12O15370 315 aa25.66■■□□□ 1.7
CLSTN3-214ENST00000542663 TTC21AQ8NDW8 1320 aa25.65■■□□□ 1.7
CLSTN3-214ENST00000542663 BTAF1O14981 1849 aa25.65■■□□□ 1.7
CLSTN3-214ENST00000542663 TNS2Q63HR2 1409 aa25.64■■□□□ 1.7
CLSTN3-214ENST00000542663 PTGER2P43116 358 aa25.64■■□□□ 1.7
CLSTN3-214ENST00000542663 CHD4Q14839 1912 aa25.64■■□□□ 1.69
CLSTN3-214ENST00000542663 PAPPAQ13219 1627 aa25.63■■□□□ 1.69
CLSTN3-214ENST00000542663 ZBTB7AO95365 584 aa25.63■■□□□ 1.69
CLSTN3-214ENST00000542663 TXNRD1Q16881 649 aa25.63■■□□□ 1.69
CLSTN3-214ENST00000542663 KAT6BQ8WYB5 2073 aa25.62■■□□□ 1.69
CLSTN3-214ENST00000542663 CCDC7Q96M83 1385 aa25.62■■□□□ 1.69
CLSTN3-214ENST00000542663 DCAF8L1A6NGE4 600 aa25.62■■□□□ 1.69
CLSTN3-214ENST00000542663 CSB-PGBD3P0DP91 1061 aa25.62■■□□□ 1.69
CLSTN3-214ENST00000542663 KTN1Q86UP2 1357 aaKnown RBP25.61■■□□□ 1.69
CLSTN3-214ENST00000542663 UTRNP46939 3433 aa25.6■■□□□ 1.69
CLSTN3-214ENST00000542663 ROCK2O75116 1388 aaKnown RBP25.6■■□□□ 1.69
CLSTN3-214ENST00000542663 EXOC5O00471 708 aa25.6■■□□□ 1.69
CLSTN3-214ENST00000542663 SLC15A2Q16348 729 aa25.59■■□□□ 1.69
CLSTN3-214ENST00000542663 SIN3AQ96ST3 1273 aa25.59■■□□□ 1.69
CLSTN3-214ENST00000542663 ATF5Q9Y2D1 282 aaPredicted RBP25.59■■□□□ 1.69
CLSTN3-214ENST00000542663 STK32BQ9NY57 414 aa25.57■■□□□ 1.68
CLSTN3-214ENST00000542663 CD163L1Q9NR16 1453 aa25.57■■□□□ 1.68
CLSTN3-214ENST00000542663 USP31Q70CQ4 1352 aa25.56■■□□□ 1.68
CLSTN3-214ENST00000542663 QSER1Q2KHR3 1735 aa25.54■■□□□ 1.68
CLSTN3-214ENST00000542663 SGIP1Q9BQI5 828 aa25.54■■□□□ 1.68
CLSTN3-214ENST00000542663 ERBB3P21860 1342 aa25.54■■□□□ 1.68
CLSTN3-214ENST00000542663 TUBGCP6Q96RT7 1819 aa25.52■■□□□ 1.68
CLSTN3-214ENST00000542663 FHDC1Q9C0D6 1143 aaPredicted RBP25.52■■□□□ 1.68
CLSTN3-214ENST00000542663 SBNO2Q9Y2G9 1366 aa25.52■■□□□ 1.68
CLSTN3-214ENST00000542663 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.51■■□□□ 1.67
CLSTN3-214ENST00000542663 ACSBG1Q96GR2 724 aa25.51■■□□□ 1.67
CLSTN3-214ENST00000542663 SYT17Q9BSW7 474 aa25.51■■□□□ 1.67
CLSTN3-214ENST00000542663 MTFR1LQ9H019 292 aa25.51■■□□□ 1.67
CLSTN3-214ENST00000542663 FAM208AQ9UK61 1670 aaKnown RBP25.51■■□□□ 1.67
CLSTN3-214ENST00000542663 COL24A1Q17RW2 1714 aa25.51■■□□□ 1.67
CLSTN3-214ENST00000542663 NME9Q86XW9 330 aa25.5■■□□□ 1.67
CLSTN3-214ENST00000542663 RGPD2P0DJD1 1756 aa25.49■■□□□ 1.67
CLSTN3-214ENST00000542663 NLRP2Q9NX02 1062 aa25.48■■□□□ 1.67
CLSTN3-214ENST00000542663 IL2RBP14784 551 aa25.47■■□□□ 1.67
CLSTN3-214ENST00000542663 NEUROD1Q13562 356 aa25.47■■□□□ 1.67
CLSTN3-214ENST00000542663 SHANK3Q9BYB0 1731 aa25.46■■□□□ 1.67
CLSTN3-214ENST00000542663 ZNF784Q8NCA9 323 aaPredicted RBP25.45■■□□□ 1.66
CLSTN3-214ENST00000542663 LY75O60449 1722 aa25.44■■□□□ 1.66
CLSTN3-214ENST00000542663 DOT1LQ8TEK3 1739 aa25.44■■□□□ 1.66
CLSTN3-214ENST00000542663 ANKRD24Q8TF21 1146 aa25.44■■□□□ 1.66
CLSTN3-214ENST00000542663 ZNF827Q17R98 1081 aa25.43■■□□□ 1.66
CLSTN3-214ENST00000542663 LRRC4BQ9NT99 713 aa25.43■■□□□ 1.66
CLSTN3-214ENST00000542663 EDC4Q6P2E9 1401 aaKnown RBP25.43■■□□□ 1.66
CLSTN3-214ENST00000542663 MAP3K5Q99683 1374 aa25.41■■□□□ 1.66
CLSTN3-214ENST00000542663 ARXQ96QS3 562 aa25.4■■□□□ 1.66
CLSTN3-214ENST00000542663 SLC12A5Q9H2X9 1139 aa25.4■■□□□ 1.66
CLSTN3-214ENST00000542663 A0A1W2PP64 1363 aa25.4■■□□□ 1.66
CLSTN3-214ENST00000542663 TMC1Q8TDI8 760 aa25.38■■□□□ 1.65
CLSTN3-214ENST00000542663 HDGFL2Q7Z4V5 671 aaPredicted RBP25.37■■□□□ 1.65
CLSTN3-214ENST00000542663 CARD11Q9BXL7 1154 aa25.36■■□□□ 1.65
CLSTN3-214ENST00000542663 AKT1S1Q96B36 256 aa25.35■■□□□ 1.65
CLSTN3-214ENST00000542663 GOLGB1Q14789 3259 aaKnown RBP25.34■■□□□ 1.65
CLSTN3-214ENST00000542663 IP6K1Q92551 441 aa25.33■■□□□ 1.65
CLSTN3-214ENST00000542663 DDX54Q8TDD1 881 aaKnown RBP25.31■■□□□ 1.64
CLSTN3-214ENST00000542663 TERF2IPQ9NYB0 399 aa25.31■■□□□ 1.64
CLSTN3-214ENST00000542663 PNPLA7Q6ZV29 1317 aa25.31■■□□□ 1.64
CLSTN3-214ENST00000542663 SLC27A3Q5K4L6 730 aa25.3■■□□□ 1.64
CLSTN3-214ENST00000542663 NSD2O96028 1365 aa25.3■■□□□ 1.64
CLSTN3-214ENST00000542663 LTV1Q96GA3 475 aaPredicted RBP25.29■■□□□ 1.64
CLSTN3-214ENST00000542663 KCNQ4P56696 695 aa25.28■■□□□ 1.64
CLSTN3-214ENST00000542663 SLC16A10Q8TF71 515 aa25.28■■□□□ 1.64
CLSTN3-214ENST00000542663 PUS7Q96PZ0 661 aaKnown RBP25.28■■□□□ 1.64
CLSTN3-214ENST00000542663 ANKRD36BQ8N2N9 1353 aa25.28■■□□□ 1.64
CLSTN3-214ENST00000542663 TAF1LQ8IZX4 1826 aa25.27■■□□□ 1.64
CLSTN3-214ENST00000542663 MEGF6O75095 1541 aa25.27■■□□□ 1.64
CLSTN3-214ENST00000542663 C5P01031 1676 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms