RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 NME9Q86XW9 330 aa28.41■■■□□ 2.14
DDB1-220ENST00000542337 USP31Q70CQ4 1352 aa28.4■■■□□ 2.14
DDB1-220ENST00000542337 NINLQ9Y2I6 1382 aa28.4■■■□□ 2.14
DDB1-220ENST00000542337 EN1Q05925 392 aaPredicted RBP28.4■■■□□ 2.14
DDB1-220ENST00000542337 EDC4Q6P2E9 1401 aaKnown RBP28.39■■■□□ 2.14
DDB1-220ENST00000542337 CLSPNQ9HAW4 1339 aa28.39■■■□□ 2.13
DDB1-220ENST00000542337 CDCA7Q9BWT1 371 aaPredicted RBP28.38■■■□□ 2.13
DDB1-220ENST00000542337 CD163L1Q9NR16 1453 aa28.38■■■□□ 2.13
DDB1-220ENST00000542337 TMF1P82094 1093 aa28.37■■■□□ 2.13
DDB1-220ENST00000542337 MON2Q7Z3U7 1717 aa28.36■■■□□ 2.13
DDB1-220ENST00000542337 APBA3O96018 575 aa28.36■■■□□ 2.13
DDB1-220ENST00000542337 DDB1Q16531 1140 aa28.36■■■□□ 2.13
DDB1-220ENST00000542337 A0A1W2PP64 1363 aa28.36■■■□□ 2.13
DDB1-220ENST00000542337 RGPD1P0DJD0 1748 aa28.35■■■□□ 2.13
DDB1-220ENST00000542337 CARD10Q9BWT7 1032 aa28.35■■■□□ 2.13
DDB1-220ENST00000542337 USP47Q96K76 1375 aa28.35■■■□□ 2.13
DDB1-220ENST00000542337 CDCA8Q53HL2 280 aa28.33■■■□□ 2.13
DDB1-220ENST00000542337 DISP2A7MBM2 1401 aa28.33■■■□□ 2.13
DDB1-220ENST00000542337 NFAT5O94916 1531 aa28.32■■■□□ 2.12
DDB1-220ENST00000542337 COL18A1P39060 1754 aa28.31■■■□□ 2.12
DDB1-220ENST00000542337 EZH2Q15910 746 aaKnown RBP28.29■■■□□ 2.12
DDB1-220ENST00000542337 COG3Q96JB2 828 aa28.28■■■□□ 2.12
DDB1-220ENST00000542337 CAMKK2Q96RR4 588 aa28.28■■■□□ 2.12
DDB1-220ENST00000542337 ABCC6O95255 1503 aa28.28■■■□□ 2.12
DDB1-220ENST00000542337 PARD3Q8TEW0 1356 aa28.27■■■□□ 2.12
DDB1-220ENST00000542337 CCDC7Q96M83 1385 aa28.27■■■□□ 2.12
DDB1-220ENST00000542337 OVOS2A0A0G2JMS6 1433 aa28.26■■■□□ 2.12
DDB1-220ENST00000542337 OVOS2A0A0J9YW53 1432 aa28.26■■■□□ 2.12
DDB1-220ENST00000542337 OVOS2Q6IE36 1432 aa28.26■■■□□ 2.12
DDB1-220ENST00000542337 PARP4Q9UKK3 1724 aaKnown RBP28.26■■■□□ 2.12
DDB1-220ENST00000542337 PSDA5PKW4 1024 aaPredicted RBP28.26■■■□□ 2.11
DDB1-220ENST00000542337 EXOC5O00471 708 aa28.26■■■□□ 2.11
DDB1-220ENST00000542337 NLRP2Q9NX02 1062 aa28.26■■■□□ 2.11
DDB1-220ENST00000542337 ANKRD36BQ8N2N9 1353 aa28.24■■■□□ 2.11
DDB1-220ENST00000542337 SRCAPQ6ZRS2 3230 aa28.24■■■□□ 2.11
DDB1-220ENST00000542337 ERBB3P21860 1342 aa28.22■■■□□ 2.11
DDB1-220ENST00000542337 ANKRD24Q8TF21 1146 aa28.22■■■□□ 2.11
DDB1-220ENST00000542337 USP54Q70EL1 1684 aa28.22■■■□□ 2.11
DDB1-220ENST00000542337 TNS1Q9HBL0 1735 aaKnown RBP28.21■■■□□ 2.11
DDB1-220ENST00000542337 CCER1Q8TC90 406 aaPredicted RBP28.21■■■□□ 2.11
DDB1-220ENST00000542337 R3HDM1Q15032 1099 aaKnown RBP28.2■■■□□ 2.1
DDB1-220ENST00000542337 NBPF14Q5TI25 921 aa28.2■■■□□ 2.1
DDB1-220ENST00000542337 MARCH10Q8NA82 808 aaPredicted RBP28.19■■■□□ 2.1
DDB1-220ENST00000542337 IP6K1Q92551 441 aa28.19■■■□□ 2.1
DDB1-220ENST00000542337 BCL11BQ9C0K0 894 aaPredicted RBP28.18■■■□□ 2.1
DDB1-220ENST00000542337 RGPD5Q99666 1765 aa28.18■■■□□ 2.1
DDB1-220ENST00000542337 AMPHP49418 695 aa28.17■■■□□ 2.1
DDB1-220ENST00000542337 IL2RBP14784 551 aa28.16■■■□□ 2.1
DDB1-220ENST00000542337 LRRC37A3O60309 1634 aa28.16■■■□□ 2.1
DDB1-220ENST00000542337 LTV1Q96GA3 475 aaPredicted RBP28.14■■■□□ 2.1
DDB1-220ENST00000542337 FYB1O15117 783 aa28.13■■■□□ 2.09
DDB1-220ENST00000542337 BCL9O00512 1426 aa28.12■■■□□ 2.09
DDB1-220ENST00000542337 PLSCR1O15162 318 aa28.12■■■□□ 2.09
DDB1-220ENST00000542337 MAP3K19Q56UN5 1328 aa28.12■■■□□ 2.09
DDB1-220ENST00000542337 GGNBP2Q9H3C7 697 aa28.11■■■□□ 2.09
DDB1-220ENST00000542337 LTN1O94822 1766 aa28.11■■■□□ 2.09
DDB1-220ENST00000542337 HOXC9P31274 260 aa28.09■■■□□ 2.09
DDB1-220ENST00000542337 PEAK1Q9H792 1746 aa28.09■■■□□ 2.09
DDB1-220ENST00000542337 TNS2Q63HR2 1409 aa28.09■■■□□ 2.09
DDB1-220ENST00000542337 WNK3Q9BYP7 1800 aa28.08■■■□□ 2.09
DDB1-220ENST00000542337 FBLN1P23142 703 aa28.07■■■□□ 2.08
DDB1-220ENST00000542337 EIF4G2P78344 907 aaKnown RBP eCLIP28.05■■■□□ 2.08
DDB1-220ENST00000542337 POLR3GLQ9BT43 218 aa28.05■■■□□ 2.08
DDB1-220ENST00000542337 RRS1Q15050 365 aaKnown RBP28.04■■■□□ 2.08
DDB1-220ENST00000542337 PTF1AQ7RTS3 328 aa28.04■■■□□ 2.08
DDB1-220ENST00000542337 RTL1A6NKG5 1358 aa28.03■■■□□ 2.08
DDB1-220ENST00000542337 CARD14Q9BXL6 1004 aa28.01■■■□□ 2.07
DDB1-220ENST00000542337 LRP5O75197 1615 aa28■■■□□ 2.07
DDB1-220ENST00000542337 DDX54Q8TDD1 881 aaKnown RBP28■■■□□ 2.07
DDB1-220ENST00000542337 ACSBG1Q96GR2 724 aa28■■■□□ 2.07
DDB1-220ENST00000542337 RREB1Q92766 1687 aa28■■■□□ 2.07
DDB1-220ENST00000542337 SMG6Q86US8 1419 aaKnown RBP27.99■■■□□ 2.07
DDB1-220ENST00000542337 NSD3Q9BZ95 1437 aa27.99■■■□□ 2.07
DDB1-220ENST00000542337 SBF2Q86WG5 1849 aa27.98■■■□□ 2.07
DDB1-220ENST00000542337 KCNQ2O43526 872 aa27.98■■■□□ 2.07
DDB1-220ENST00000542337 CGNL1Q0VF96 1302 aa27.96■■■□□ 2.07
DDB1-220ENST00000542337 TXNRD1Q16881 649 aa27.96■■■□□ 2.07
DDB1-220ENST00000542337 NUP188Q5SRE5 1749 aa27.95■■■□□ 2.07
DDB1-220ENST00000542337 FAM208AQ9UK61 1670 aaKnown RBP27.95■■■□□ 2.07
DDB1-220ENST00000542337 HSPA5P11021 654 aaKnown RBP27.95■■■□□ 2.06
DDB1-220ENST00000542337 PROM2Q8N271 834 aa27.94■■■□□ 2.06
DDB1-220ENST00000542337 ZCRB1Q8TBF4 217 aaKnown RBP27.94■■■□□ 2.06
DDB1-220ENST00000542337 KIF24Q5T7B8 1368 aa27.94■■■□□ 2.06
DDB1-220ENST00000542337 NBPF6Q5VWK0 638 aa27.93■■■□□ 2.06
DDB1-220ENST00000542337 NBPF4Q96M43 638 aa27.93■■■□□ 2.06
DDB1-220ENST00000542337 RGPD3A6NKT7 1758 aaPredicted RBP27.93■■■□□ 2.06
DDB1-220ENST00000542337 RGPD4Q7Z3J3 1758 aa27.93■■■□□ 2.06
DDB1-220ENST00000542337 INSRP06213 1382 aa27.92■■■□□ 2.06
DDB1-220ENST00000542337 FLT4P35916 1363 aa27.92■■■□□ 2.06
DDB1-220ENST00000542337 HSP90AB2PQ58FF8 381 aa27.92■■■□□ 2.06
DDB1-220ENST00000542337 RAPGEF4Q8WZA2 1011 aa27.92■■■□□ 2.06
DDB1-220ENST00000542337 STK32BQ9NY57 414 aa27.92■■■□□ 2.06
DDB1-220ENST00000542337 SPON1Q9HCB6 807 aa27.91■■■□□ 2.06
DDB1-220ENST00000542337 PPM1GO15355 546 aaPredicted RBP27.9■■■□□ 2.06
DDB1-220ENST00000542337 KIF20BQ96Q89 1820 aa27.88■■■□□ 2.05
DDB1-220ENST00000542337 TATP17735 454 aaPredicted RBP27.88■■■□□ 2.05
DDB1-220ENST00000542337 ANO8Q9HCE9 1232 aaPredicted RBP27.88■■■□□ 2.05
DDB1-220ENST00000542337 USHBP1Q8N6Y0 703 aa27.87■■■□□ 2.05
DDB1-220ENST00000542337 MYOM1P52179 1685 aa27.87■■■□□ 2.05
DDB1-220ENST00000542337 SYTL4Q96C24 671 aaPredicted RBP27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms