RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 WDR17Q8IZU2 1322 aa17.63■□□□□ 0.41
SNHG1-216ENST00000541416 LRRC37A3O60309 1634 aa17.62■□□□□ 0.41
SNHG1-216ENST00000541416 PEAK1Q9H792 1746 aa17.62■□□□□ 0.41
SNHG1-216ENST00000541416 SBF2Q86WG5 1849 aa17.61■□□□□ 0.41
SNHG1-216ENST00000541416 CSB-PGBD3P0DP91 1061 aa17.61■□□□□ 0.41
SNHG1-216ENST00000541416 BCL9O00512 1426 aa17.59■□□□□ 0.41
SNHG1-216ENST00000541416 CPSF1Q10570 1443 aaKnown RBP17.59■□□□□ 0.41
SNHG1-216ENST00000541416 AKAP12Q02952 1782 aa17.58■□□□□ 0.41
SNHG1-216ENST00000541416 PIK3C2AO00443 1686 aa17.58■□□□□ 0.41
SNHG1-216ENST00000541416 TTC21AQ8NDW8 1320 aa17.58■□□□□ 0.4
SNHG1-216ENST00000541416 ARHGEF25Q86VW2 580 aa17.58■□□□□ 0.4
SNHG1-216ENST00000541416 CARD10Q9BWT7 1032 aa17.58■□□□□ 0.4
SNHG1-216ENST00000541416 TRPM1Q7Z4N2 1603 aa17.58■□□□□ 0.4
SNHG1-216ENST00000541416 WNK3Q9BYP7 1800 aa17.57■□□□□ 0.4
SNHG1-216ENST00000541416 EXOC5O00471 708 aa17.57■□□□□ 0.4
SNHG1-216ENST00000541416 AXIN2Q9Y2T1 843 aa17.57■□□□□ 0.4
SNHG1-216ENST00000541416 COL18A1P39060 1754 aa17.57■□□□□ 0.4
SNHG1-216ENST00000541416 TTC21BQ7Z4L5 1316 aa17.56■□□□□ 0.4
SNHG1-216ENST00000541416 STK32BQ9NY57 414 aa17.56■□□□□ 0.4
SNHG1-216ENST00000541416 CCDC7Q96M83 1385 aa17.55■□□□□ 0.4
SNHG1-216ENST00000541416 SOX12O15370 315 aa17.55■□□□□ 0.4
SNHG1-216ENST00000541416 MARCH10Q8NA82 808 aaPredicted RBP17.55■□□□□ 0.4
SNHG1-216ENST00000541416 ANO8Q9HCE9 1232 aaPredicted RBP17.54■□□□□ 0.4
SNHG1-216ENST00000541416 ROCK2O75116 1388 aaKnown RBP17.53■□□□□ 0.4
SNHG1-216ENST00000541416 CASZ1Q86V15 1759 aa17.53■□□□□ 0.4
SNHG1-216ENST00000541416 ABCC6O95255 1503 aa17.53■□□□□ 0.4
SNHG1-216ENST00000541416 TXNRD1Q16881 649 aa17.53■□□□□ 0.4
SNHG1-216ENST00000541416 L3MBTL2Q969R5 705 aa17.53■□□□□ 0.4
SNHG1-216ENST00000541416 KTN1Q86UP2 1357 aaKnown RBP17.53■□□□□ 0.4
SNHG1-216ENST00000541416 ZBTB7AO95365 584 aa17.52■□□□□ 0.4
SNHG1-216ENST00000541416 PROM2Q8N271 834 aa17.51■□□□□ 0.39
SNHG1-216ENST00000541416 RGPD5Q99666 1765 aa17.51■□□□□ 0.39
SNHG1-216ENST00000541416 TNS2Q63HR2 1409 aa17.5■□□□□ 0.39
SNHG1-216ENST00000541416 SLC15A2Q16348 729 aa17.5■□□□□ 0.39
SNHG1-216ENST00000541416 PTF1AQ7RTS3 328 aa17.5■□□□□ 0.39
SNHG1-216ENST00000541416 MTFR1LQ9H019 292 aa17.49■□□□□ 0.39
SNHG1-216ENST00000541416 ATF5Q9Y2D1 282 aaPredicted RBP17.49■□□□□ 0.39
SNHG1-216ENST00000541416 NFAT5O94916 1531 aa17.48■□□□□ 0.39
SNHG1-216ENST00000541416 PTGER2P43116 358 aa17.47■□□□□ 0.39
SNHG1-216ENST00000541416 PDGFDQ9GZP0 370 aaPredicted RBP17.46■□□□□ 0.39
SNHG1-216ENST00000541416 NLRP2Q9NX02 1062 aa17.46■□□□□ 0.39
SNHG1-216ENST00000541416 MYOM1P52179 1685 aa17.45■□□□□ 0.38
SNHG1-216ENST00000541416 IL2RBP14784 551 aa17.45■□□□□ 0.38
SNHG1-216ENST00000541416 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.45■□□□□ 0.38
SNHG1-216ENST00000541416 NHSQ6T4R5 1651 aa17.45■□□□□ 0.38
SNHG1-216ENST00000541416 ERBB3P21860 1342 aa17.45■□□□□ 0.38
SNHG1-216ENST00000541416 MON2Q7Z3U7 1717 aa17.44■□□□□ 0.38
SNHG1-216ENST00000541416 USP31Q70CQ4 1352 aa17.44■□□□□ 0.38
SNHG1-216ENST00000541416 SBNO2Q9Y2G9 1366 aa17.44■□□□□ 0.38
SNHG1-216ENST00000541416 HDGFL2Q7Z4V5 671 aaPredicted RBP17.44■□□□□ 0.38
SNHG1-216ENST00000541416 SYT17Q9BSW7 474 aa17.44■□□□□ 0.38
SNHG1-216ENST00000541416 FHDC1Q9C0D6 1143 aaPredicted RBP17.44■□□□□ 0.38
SNHG1-216ENST00000541416 NEUROD1Q13562 356 aa17.43■□□□□ 0.38
SNHG1-216ENST00000541416 TMC1Q8TDI8 760 aa17.42■□□□□ 0.38
SNHG1-216ENST00000541416 ACSBG1Q96GR2 724 aa17.42■□□□□ 0.38
SNHG1-216ENST00000541416 UTRNP46939 3433 aa17.41■□□□□ 0.38
SNHG1-216ENST00000541416 ARXQ96QS3 562 aa17.41■□□□□ 0.38
SNHG1-216ENST00000541416 SIN3AQ96ST3 1273 aa17.41■□□□□ 0.38
SNHG1-216ENST00000541416 TERF2IPQ9NYB0 399 aa17.41■□□□□ 0.38
SNHG1-216ENST00000541416 LTN1O94822 1766 aa17.4■□□□□ 0.38
SNHG1-216ENST00000541416 USP54Q70EL1 1684 aa17.4■□□□□ 0.38
SNHG1-216ENST00000541416 ANKRD24Q8TF21 1146 aa17.4■□□□□ 0.38
SNHG1-216ENST00000541416 NME9Q86XW9 330 aa17.39■□□□□ 0.37
SNHG1-216ENST00000541416 ZNF784Q8NCA9 323 aaPredicted RBP17.39■□□□□ 0.37
SNHG1-216ENST00000541416 KAT6BQ8WYB5 2073 aa17.39■□□□□ 0.37
SNHG1-216ENST00000541416 EDC4Q6P2E9 1401 aaKnown RBP17.38■□□□□ 0.37
SNHG1-216ENST00000541416 SGIP1Q9BQI5 828 aa17.38■□□□□ 0.37
SNHG1-216ENST00000541416 CARD11Q9BXL7 1154 aa17.38■□□□□ 0.37
SNHG1-216ENST00000541416 CHD4Q14839 1912 aa17.38■□□□□ 0.37
SNHG1-216ENST00000541416 MAP3K5Q99683 1374 aa17.38■□□□□ 0.37
SNHG1-216ENST00000541416 BTAF1O14981 1849 aa17.37■□□□□ 0.37
SNHG1-216ENST00000541416 SLC27A3Q5K4L6 730 aa17.37■□□□□ 0.37
SNHG1-216ENST00000541416 SLC16A10Q8TF71 515 aa17.37■□□□□ 0.37
SNHG1-216ENST00000541416 POLD1P28340 1107 aa17.36■□□□□ 0.37
SNHG1-216ENST00000541416 PAPPAQ13219 1627 aa17.36■□□□□ 0.37
SNHG1-216ENST00000541416 PUS7Q96PZ0 661 aaKnown RBP17.35■□□□□ 0.37
SNHG1-216ENST00000541416 IP6K1Q92551 441 aa17.34■□□□□ 0.37
SNHG1-216ENST00000541416 SLC12A5Q9H2X9 1139 aa17.34■□□□□ 0.37
SNHG1-216ENST00000541416 CD163L1Q9NR16 1453 aa17.34■□□□□ 0.37
SNHG1-216ENST00000541416 FAM208AQ9UK61 1670 aaKnown RBP17.34■□□□□ 0.37
SNHG1-216ENST00000541416 SLC24A1O60721 1099 aa17.33■□□□□ 0.36
SNHG1-216ENST00000541416 GPR162Q16538 588 aa17.33■□□□□ 0.36
SNHG1-216ENST00000541416 DDX54Q8TDD1 881 aaKnown RBP17.33■□□□□ 0.36
SNHG1-216ENST00000541416 ZNF827Q17R98 1081 aa17.32■□□□□ 0.36
SNHG1-216ENST00000541416 A0A1W2PP64 1363 aa17.31■□□□□ 0.36
SNHG1-216ENST00000541416 HMGB2P26583 209 aaKnown RBP17.31■□□□□ 0.36
SNHG1-216ENST00000541416 SYTL4Q96C24 671 aaPredicted RBP17.31■□□□□ 0.36
SNHG1-216ENST00000541416 COG3Q96JB2 828 aa17.31■□□□□ 0.36
SNHG1-216ENST00000541416 LRRC4BQ9NT99 713 aa17.31■□□□□ 0.36
SNHG1-216ENST00000541416 TFCP2L1Q9NZI6 479 aa17.31■□□□□ 0.36
SNHG1-216ENST00000541416 QSER1Q2KHR3 1735 aa17.3■□□□□ 0.36
SNHG1-216ENST00000541416 KLHL34Q8N239 644 aa17.3■□□□□ 0.36
SNHG1-216ENST00000541416 AKT1S1Q96B36 256 aa17.3■□□□□ 0.36
SNHG1-216ENST00000541416 LTV1Q96GA3 475 aaPredicted RBP17.3■□□□□ 0.36
SNHG1-216ENST00000541416 GOLGB1Q14789 3259 aaKnown RBP17.3■□□□□ 0.36
SNHG1-216ENST00000541416 ANKRD36BQ8N2N9 1353 aa17.28■□□□□ 0.36
SNHG1-216ENST00000541416 AMPHP49418 695 aa17.28■□□□□ 0.36
SNHG1-216ENST00000541416 TONSLQ96HA7 1378 aa17.28■□□□□ 0.36
SNHG1-216ENST00000541416 SENP3-EIF4A1A0A087X0R7 540 aa17.27■□□□□ 0.36
SNHG1-216ENST00000541416 C1QTNF8P60827 252 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms