RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 RBM6P78332 1123 aaKnown RBP25.6■■□□□ 1.69
VPS33A-205ENST00000541169 CAMTA1Q9Y6Y1 1673 aa25.59■■□□□ 1.69
VPS33A-205ENST00000541169 MORC1Q86VD1 984 aa25.59■■□□□ 1.69
VPS33A-205ENST00000541169 ZNF316A6NFI3 1004 aaPredicted RBP25.58■■□□□ 1.69
VPS33A-205ENST00000541169 ZBTB7CA1YPR0 619 aa25.57■■□□□ 1.68
VPS33A-205ENST00000541169 AMPHP49418 695 aa25.57■■□□□ 1.68
VPS33A-205ENST00000541169 POTEAQ6S8J7 498 aa25.57■■□□□ 1.68
VPS33A-205ENST00000541169 IP6K1Q92551 441 aa25.57■■□□□ 1.68
VPS33A-205ENST00000541169 GJD4Q96KN9 370 aaPredicted RBP25.57■■□□□ 1.68
VPS33A-205ENST00000541169 CDK12Q9NYV4 1490 aaPredicted RBP25.57■■□□□ 1.68
VPS33A-205ENST00000541169 MAP3K19Q56UN5 1328 aa25.57■■□□□ 1.68
VPS33A-205ENST00000541169 COL5A2P05997 1499 aaPredicted RBP25.56■■□□□ 1.68
VPS33A-205ENST00000541169 FLT4P35916 1363 aa25.54■■□□□ 1.68
VPS33A-205ENST00000541169 STRN4Q9NRL3 753 aa25.53■■□□□ 1.68
VPS33A-205ENST00000541169 CCDC9Q9Y3X0 531 aaKnown RBP25.53■■□□□ 1.68
VPS33A-205ENST00000541169 WDR17Q8IZU2 1322 aa25.53■■□□□ 1.68
VPS33A-205ENST00000541169 AXIN2Q9Y2T1 843 aa25.52■■□□□ 1.68
VPS33A-205ENST00000541169 THRAP3Q9Y2W1 955 aaKnown RBP25.52■■□□□ 1.68
VPS33A-205ENST00000541169 SPATA31A5Q5VU36 1347 aa25.52■■□□□ 1.68
VPS33A-205ENST00000541169 SPATA31A7Q8IWB4 1347 aa25.52■■□□□ 1.68
VPS33A-205ENST00000541169 CRB1P82279 1406 aa25.52■■□□□ 1.68
VPS33A-205ENST00000541169 MAP2P11137 1827 aaKnown RBP25.51■■□□□ 1.67
VPS33A-205ENST00000541169 HOXC9P31274 260 aa25.51■■□□□ 1.67
VPS33A-205ENST00000541169 RRS1Q15050 365 aaKnown RBP25.5■■□□□ 1.67
VPS33A-205ENST00000541169 FAM208AQ9UK61 1670 aaKnown RBP25.5■■□□□ 1.67
VPS33A-205ENST00000541169 SMG6Q86US8 1419 aaKnown RBP25.49■■□□□ 1.67
VPS33A-205ENST00000541169 INSRP06213 1382 aa25.49■■□□□ 1.67
VPS33A-205ENST00000541169 ERBB3P21860 1342 aa25.49■■□□□ 1.67
VPS33A-205ENST00000541169 SPATA31A1Q5TZJ5 1347 aa25.49■■□□□ 1.67
VPS33A-205ENST00000541169 CSB-PGBD3P0DP91 1061 aa25.49■■□□□ 1.67
VPS33A-205ENST00000541169 DDX10Q13206 875 aaKnown RBP25.49■■□□□ 1.67
VPS33A-205ENST00000541169 CC2D1BQ5T0F9 858 aaKnown RBP25.49■■□□□ 1.67
VPS33A-205ENST00000541169 RGPD5Q99666 1765 aa25.49■■□□□ 1.67
VPS33A-205ENST00000541169 POLKQ9UBT6 870 aa25.48■■□□□ 1.67
VPS33A-205ENST00000541169 ONECUT3O60422 494 aaPredicted RBP25.47■■□□□ 1.67
VPS33A-205ENST00000541169 LARP1Q6PKG0 1096 aaKnown RBP25.47■■□□□ 1.67
VPS33A-205ENST00000541169 TOM1L2Q6ZVM7 507 aa25.47■■□□□ 1.67
VPS33A-205ENST00000541169 BARGINQ6ZT62 677 aa25.46■■□□□ 1.67
VPS33A-205ENST00000541169 TCP11L2Q8N4U5 519 aa25.46■■□□□ 1.67
VPS33A-205ENST00000541169 GLI3P10071 1580 aa25.45■■□□□ 1.66
VPS33A-205ENST00000541169 TNNT2P45379 298 aaPredicted RBP25.45■■□□□ 1.66
VPS33A-205ENST00000541169 ANKRD24Q8TF21 1146 aa25.45■■□□□ 1.66
VPS33A-205ENST00000541169 CARD10Q9BWT7 1032 aa25.45■■□□□ 1.66
VPS33A-205ENST00000541169 FBLN1P23142 703 aa25.44■■□□□ 1.66
VPS33A-205ENST00000541169 CDCA7Q9BWT1 371 aaPredicted RBP25.44■■□□□ 1.66
VPS33A-205ENST00000541169 PPM1GO15355 546 aaPredicted RBP25.43■■□□□ 1.66
VPS33A-205ENST00000541169 EMILIN1Q9Y6C2 1016 aa25.43■■□□□ 1.66
VPS33A-205ENST00000541169 PEAK1Q9H792 1746 aa25.41■■□□□ 1.66
VPS33A-205ENST00000541169 HSP90AB2PQ58FF8 381 aa25.4■■□□□ 1.66
VPS33A-205ENST00000541169 NLRP2Q9NX02 1062 aa25.4■■□□□ 1.66
VPS33A-205ENST00000541169 RALBP1Q15311 655 aa25.38■■□□□ 1.65
VPS33A-205ENST00000541169 USP35Q9P2H5 1018 aa25.38■■□□□ 1.65
VPS33A-205ENST00000541169 FAM98CQ17RN3 349 aaKnown RBP25.37■■□□□ 1.65
VPS33A-205ENST00000541169 RGS12O14924 1447 aa25.37■■□□□ 1.65
VPS33A-205ENST00000541169 PARD3Q8TEW0 1356 aa25.36■■□□□ 1.65
VPS33A-205ENST00000541169 MTHFSP49914 203 aa25.35■■□□□ 1.65
VPS33A-205ENST00000541169 SEPT12Q8IYM1 358 aa25.35■■□□□ 1.65
VPS33A-205ENST00000541169 LTV1Q96GA3 475 aaPredicted RBP25.35■■□□□ 1.65
VPS33A-205ENST00000541169 THSD7AQ9UPZ6 1657 aa25.35■■□□□ 1.65
VPS33A-205ENST00000541169 A0A0G2JS52 829 aa25.33■■□□□ 1.65
VPS33A-205ENST00000541169 MYT1Q01538 1121 aa25.33■■□□□ 1.65
VPS33A-205ENST00000541169 CFAP53Q96M91 514 aa25.33■■□□□ 1.65
VPS33A-205ENST00000541169 PARP4Q9UKK3 1724 aaKnown RBP25.32■■□□□ 1.64
VPS33A-205ENST00000541169 WNK3Q9BYP7 1800 aa25.31■■□□□ 1.64
VPS33A-205ENST00000541169 ILDR2Q71H61 639 aa25.31■■□□□ 1.64
VPS33A-205ENST00000541169 PLEKHG2Q9H7P9 1386 aa25.31■■□□□ 1.64
VPS33A-205ENST00000541169 IL2RBP14784 551 aa25.3■■□□□ 1.64
VPS33A-205ENST00000541169 PPP2R1AP30153 589 aa25.3■■□□□ 1.64
VPS33A-205ENST00000541169 CNGB1Q14028 1251 aaPredicted RBP25.29■■□□□ 1.64
VPS33A-205ENST00000541169 EIF4A2Q14240 407 aaKnown RBP25.29■■□□□ 1.64
VPS33A-205ENST00000541169 NBPF6Q5VWK0 638 aa25.28■■□□□ 1.64
VPS33A-205ENST00000541169 NBPF4Q96M43 638 aa25.28■■□□□ 1.64
VPS33A-205ENST00000541169 DISP2A7MBM2 1401 aa25.28■■□□□ 1.64
VPS33A-205ENST00000541169 NCAPD2Q15021 1401 aa25.28■■□□□ 1.64
VPS33A-205ENST00000541169 KRT27Q7Z3Y8 459 aa25.27■■□□□ 1.64
VPS33A-205ENST00000541169 DIAPH1O60610 1272 aaKnown RBP25.26■■□□□ 1.63
VPS33A-205ENST00000541169 PDE3BQ13370 1112 aa25.26■■□□□ 1.63
VPS33A-205ENST00000541169 DDB1Q16531 1140 aa25.26■■□□□ 1.63
VPS33A-205ENST00000541169 RAPGEF4Q8WZA2 1011 aa25.26■■□□□ 1.63
VPS33A-205ENST00000541169 EXOC5O00471 708 aa25.25■■□□□ 1.63
VPS33A-205ENST00000541169 RGPD2P0DJD1 1756 aa25.24■■□□□ 1.63
VPS33A-205ENST00000541169 IGSF1Q8N6C5 1336 aa25.24■■□□□ 1.63
VPS33A-205ENST00000541169 EYA1Q99502 592 aa25.24■■□□□ 1.63
VPS33A-205ENST00000541169 BRWD3Q6RI45 1802 aa25.23■■□□□ 1.63
VPS33A-205ENST00000541169 MYBBP1AQ9BQG0 1328 aaKnown RBP25.23■■□□□ 1.63
VPS33A-205ENST00000541169 IL13P35225 146 aa25.23■■□□□ 1.63
VPS33A-205ENST00000541169 NUDCQ9Y266 331 aa25.22■■□□□ 1.63
VPS33A-205ENST00000541169 TATP17735 454 aaPredicted RBP25.21■■□□□ 1.63
VPS33A-205ENST00000541169 PRKRIP1Q9H875 184 aaPredicted RBP25.21■■□□□ 1.63
VPS33A-205ENST00000541169 LRRC37A3O60309 1634 aa25.21■■□□□ 1.63
VPS33A-205ENST00000541169 TNS2Q63HR2 1409 aa25.2■■□□□ 1.63
VPS33A-205ENST00000541169 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.19■■□□□ 1.62
VPS33A-205ENST00000541169 RGPD1P0DJD0 1748 aa25.19■■□□□ 1.62
VPS33A-205ENST00000541169 OVOS2A0A0G2JMS6 1433 aa25.19■■□□□ 1.62
VPS33A-205ENST00000541169 COL3A1P02461 1466 aaPredicted RBP25.18■■□□□ 1.62
VPS33A-205ENST00000541169 FAM196AQ6ZSG2 479 aa25.18■■□□□ 1.62
VPS33A-205ENST00000541169 CCDC125Q86Z20 511 aa25.17■■□□□ 1.62
VPS33A-205ENST00000541169 KDRP35968 1356 aa25.17■■□□□ 1.62
VPS33A-205ENST00000541169 BCL9O00512 1426 aa25.16■■□□□ 1.62
VPS33A-205ENST00000541169 ANP32CO43423 234 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms