RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 STK3Q13188 491 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 VPS18Q9P253 973 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 SYNJ1O43426 1573 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 SMC5Q8IY18 1101 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 FERMT3Q86UX7 667 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 UPF3BQ9BZI7 483 aaKnown RBP13.18□□□□□ -0.3
PBX1-212ENST00000540236 SYT10Q6XYQ8 523 aa13.18□□□□□ -0.3
PBX1-212ENST00000540236 GOLIM4O00461 696 aa13.18□□□□□ -0.3
PBX1-212ENST00000540236 TSHZ3Q63HK5 1081 aa13.18□□□□□ -0.3
PBX1-212ENST00000540236 LIG1P18858 919 aa13.18□□□□□ -0.3
PBX1-212ENST00000540236 EIF4G1Q04637 1599 aaKnown RBP13.17□□□□□ -0.3
PBX1-212ENST00000540236 PLEKHH1Q9ULM0 1364 aa13.17□□□□□ -0.3
PBX1-212ENST00000540236 REC8O95072 547 aa13.17□□□□□ -0.3
PBX1-212ENST00000540236 TCP11L2Q8N4U5 519 aa13.17□□□□□ -0.3
PBX1-212ENST00000540236 NKTRP30414 1462 aaKnown RBP13.17□□□□□ -0.3
PBX1-212ENST00000540236 ZBTB12Q9Y330 459 aaPredicted RBP13.17□□□□□ -0.3
PBX1-212ENST00000540236 HMMRO75330 724 aa13.17□□□□□ -0.3
PBX1-212ENST00000540236 PRPF38AQ8NAV1 312 aaKnown RBP13.17□□□□□ -0.3
PBX1-212ENST00000540236 DHX29Q7Z478 1369 aaKnown RBP13.17□□□□□ -0.3
PBX1-212ENST00000540236 RARSP54136 660 aaKnown RBP13.17□□□□□ -0.3
PBX1-212ENST00000540236 ZNF428Q96B54 188 aa13.17□□□□□ -0.3
PBX1-212ENST00000540236 TOP2AP11388 1531 aaKnown RBP13.16□□□□□ -0.3
PBX1-212ENST00000540236 A0A1B0GUL7 405 aa13.16□□□□□ -0.3
PBX1-212ENST00000540236 LRMPQ12912 555 aa13.16□□□□□ -0.3
PBX1-212ENST00000540236 LUZP1Q86V48 1076 aa13.16□□□□□ -0.3
PBX1-212ENST00000540236 NECTIN2Q92692 538 aa13.16□□□□□ -0.3
PBX1-212ENST00000540236 NEBLO76041 1014 aa13.16□□□□□ -0.3
PBX1-212ENST00000540236 SEC31AO94979 1220 aaKnown RBP13.16□□□□□ -0.3
PBX1-212ENST00000540236 KIF18AQ8NI77 898 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 CAPN2P17655 700 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 STK11IPQ8N1F8 1099 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 SMTNL1A8MU46 457 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 NCOA2Q15596 1464 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 ZNF445P59923 1031 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
PBX1-212ENST00000540236 TRIM66O15016 1216 aa13.14□□□□□ -0.31
PBX1-212ENST00000540236 MCM6Q14566 821 aa13.14□□□□□ -0.31
PBX1-212ENST00000540236 ARHGAP29Q52LW3 1261 aa13.14□□□□□ -0.31
PBX1-212ENST00000540236 NUTM2DQ5VT03 806 aaPredicted RBP13.14□□□□□ -0.31
PBX1-212ENST00000540236 RAD51AP2Q09MP3 1159 aa13.14□□□□□ -0.31
PBX1-212ENST00000540236 NUP62CLQ9H1M0 184 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.13□□□□□ -0.31
PBX1-212ENST00000540236 ATP6V1DQ9Y5K8 247 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 TIAM1Q13009 1591 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 CCDC91Q7Z6B0 441 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 C16orf71Q8IYS4 520 aaPredicted RBP13.13□□□□□ -0.31
PBX1-212ENST00000540236 RUNDC1Q96C34 613 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 PAXBP1Q9Y5B6 917 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 SNW1Q13573 536 aaKnown RBP13.13□□□□□ -0.31
PBX1-212ENST00000540236 ANO6Q4KMQ2 910 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 ANKRD20A12PQ8NF67 263 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 PES1O00541 588 aaKnown RBP13.13□□□□□ -0.31
PBX1-212ENST00000540236 TERF2Q15554 542 aa13.13□□□□□ -0.31
PBX1-212ENST00000540236 RNF216Q9NWF9 866 aaPredicted RBP13.13□□□□□ -0.31
PBX1-212ENST00000540236 OAS2P29728 719 aaKnown RBP13.12□□□□□ -0.31
PBX1-212ENST00000540236 RNF187Q5TA31 235 aaPredicted RBP13.12□□□□□ -0.31
PBX1-212ENST00000540236 ATP2C2O75185 946 aa13.12□□□□□ -0.31
PBX1-212ENST00000540236 C14orf37Q86TY3 774 aa13.12□□□□□ -0.31
PBX1-212ENST00000540236 PPFIA3O75145 1194 aa13.12□□□□□ -0.31
PBX1-212ENST00000540236 SF3A1Q15459 793 aaKnown RBP13.12□□□□□ -0.31
PBX1-212ENST00000540236 NRBP1Q9UHY1 535 aa13.12□□□□□ -0.31
PBX1-212ENST00000540236 ZSCAN26Q16670 478 aa13.11□□□□□ -0.31
PBX1-212ENST00000540236 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.11□□□□□ -0.31
PBX1-212ENST00000540236 CFAP44Q96MT7 982 aa13.11□□□□□ -0.31
PBX1-212ENST00000540236 SSBP05455 408 aaKnown RBP eCLIP13.11□□□□□ -0.31
PBX1-212ENST00000540236 NCBP1Q09161 790 aaKnown RBP13.11□□□□□ -0.31
PBX1-212ENST00000540236 PPP2R5AQ15172 486 aa13.11□□□□□ -0.31
PBX1-212ENST00000540236 SNX21Q969T3 373 aa13.11□□□□□ -0.31
PBX1-212ENST00000540236 MAP3K11Q16584 847 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 SLC24A3Q9HC58 644 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 RPAINQ86UA6 219 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 CCDC83Q8IWF9 413 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 FAM184AQ8NB25 1140 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 WDR33Q9C0J8 1336 aaKnown RBP13.1□□□□□ -0.31
PBX1-212ENST00000540236 LRCH2Q5VUJ6 765 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 CASQ1P31415 396 aa13.1□□□□□ -0.31
PBX1-212ENST00000540236 PRR29P0C7W0 189 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 SKILP12757 684 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 TFIP11Q9UBB9 837 aaKnown RBP13.09□□□□□ -0.31
PBX1-212ENST00000540236 CFTRP13569 1480 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 KIAA0754O94854 1291 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 PDRG1Q9NUG6 133 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 DNAI1Q9UI46 699 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 TMX3Q96JJ7 454 aa13.09□□□□□ -0.31
PBX1-212ENST00000540236 ERCC6LQ2NKX8 1250 aa13.08□□□□□ -0.31
PBX1-212ENST00000540236 ZNF215Q9UL58 517 aaPredicted RBP13.08□□□□□ -0.31
PBX1-212ENST00000540236 SLU7O95391 586 aaKnown RBP13.08□□□□□ -0.32
PBX1-212ENST00000540236 NF2P35240 595 aa13.08□□□□□ -0.32
PBX1-212ENST00000540236 MAP2K2P36507 400 aa13.08□□□□□ -0.32
PBX1-212ENST00000540236 CEP57Q86XR8 500 aa13.08□□□□□ -0.32
PBX1-212ENST00000540236 DNAJC25Q9H1X3 360 aa13.08□□□□□ -0.32
PBX1-212ENST00000540236 ERC2O15083 957 aa13.08□□□□□ -0.32
PBX1-212ENST00000540236 ECM2O94769 699 aaPredicted RBP13.08□□□□□ -0.32
PBX1-212ENST00000540236 CASTP20810 708 aaKnown RBP13.08□□□□□ -0.32
PBX1-212ENST00000540236 AKAP17AQ02040 695 aaKnown RBP13.08□□□□□ -0.32
PBX1-212ENST00000540236 TMC6Q7Z403 805 aa13.08□□□□□ -0.32
PBX1-212ENST00000540236 SARNPP82979 210 aaKnown RBP13.08□□□□□ -0.32
PBX1-212ENST00000540236 BRPF1P55201 1214 aaPredicted RBP13.07□□□□□ -0.32
PBX1-212ENST00000540236 PIK3R5Q8WYR1 880 aa13.07□□□□□ -0.32
PBX1-212ENST00000540236 RGS22Q8NE09 1264 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms