RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 BRWD3Q6RI45 1802 aa25.38■■□□□ 1.65
SNRPA1-203ENST00000540017 COG3Q96JB2 828 aa25.38■■□□□ 1.65
SNRPA1-203ENST00000540017 GGNBP2Q9H3C7 697 aa25.38■■□□□ 1.65
SNRPA1-203ENST00000540017 NSD3Q9BZ95 1437 aa25.37■■□□□ 1.65
SNRPA1-203ENST00000540017 RGPD5Q99666 1765 aa25.37■■□□□ 1.65
SNRPA1-203ENST00000540017 FBLN1P23142 703 aa25.37■■□□□ 1.65
SNRPA1-203ENST00000540017 UPF1Q92900 1129 aaKnown RBP eCLIP25.37■■□□□ 1.65
SNRPA1-203ENST00000540017 USP35Q9P2H5 1018 aa25.36■■□□□ 1.65
SNRPA1-203ENST00000540017 LTN1O94822 1766 aa25.34■■□□□ 1.65
SNRPA1-203ENST00000540017 EP400Q96L91 3159 aa25.34■■□□□ 1.65
SNRPA1-203ENST00000540017 THSD7AQ9UPZ6 1657 aa25.33■■□□□ 1.65
SNRPA1-203ENST00000540017 KIF20BQ96Q89 1820 aa25.33■■□□□ 1.65
SNRPA1-203ENST00000540017 A0A0G2JS52 829 aa25.33■■□□□ 1.65
SNRPA1-203ENST00000540017 MYT1Q01538 1121 aa25.33■■□□□ 1.65
SNRPA1-203ENST00000540017 KIF7Q2M1P5 1343 aa25.33■■□□□ 1.64
SNRPA1-203ENST00000540017 PANK3Q9H999 370 aa25.32■■□□□ 1.64
SNRPA1-203ENST00000540017 ABCC6O95255 1503 aa25.32■■□□□ 1.64
SNRPA1-203ENST00000540017 CRB1P82279 1406 aa25.31■■□□□ 1.64
SNRPA1-203ENST00000540017 TCP11L2Q8N4U5 519 aa25.3■■□□□ 1.64
SNRPA1-203ENST00000540017 WDR17Q8IZU2 1322 aa25.3■■□□□ 1.64
SNRPA1-203ENST00000540017 BARGINQ6ZT62 677 aa25.29■■□□□ 1.64
SNRPA1-203ENST00000540017 TOM1L2Q6ZVM7 507 aa25.28■■□□□ 1.64
SNRPA1-203ENST00000540017 KRT27Q7Z3Y8 459 aa25.28■■□□□ 1.64
SNRPA1-203ENST00000540017 MAP3K19Q56UN5 1328 aa25.28■■□□□ 1.64
SNRPA1-203ENST00000540017 RRS1Q15050 365 aaKnown RBP25.26■■□□□ 1.63
SNRPA1-203ENST00000540017 IP6K1Q92551 441 aa25.26■■□□□ 1.63
SNRPA1-203ENST00000540017 THRAP3Q9Y2W1 955 aaKnown RBP25.26■■□□□ 1.63
SNRPA1-203ENST00000540017 CGNL1Q0VF96 1302 aa25.26■■□□□ 1.63
SNRPA1-203ENST00000540017 CSB-PGBD3P0DP91 1061 aa25.25■■□□□ 1.63
SNRPA1-203ENST00000540017 ERBB3P21860 1342 aa25.24■■□□□ 1.63
SNRPA1-203ENST00000540017 FAM182BQ5T319 152 aa25.24■■□□□ 1.63
SNRPA1-203ENST00000540017 ANKRD24Q8TF21 1146 aa25.23■■□□□ 1.63
SNRPA1-203ENST00000540017 HOXC9P31274 260 aa25.22■■□□□ 1.63
SNRPA1-203ENST00000540017 CARD10Q9BWT7 1032 aa25.22■■□□□ 1.63
SNRPA1-203ENST00000540017 BLMP54132 1417 aaPredicted RBP25.21■■□□□ 1.63
SNRPA1-203ENST00000540017 CCDC7Q96M83 1385 aa25.21■■□□□ 1.63
SNRPA1-203ENST00000540017 WASHC2AQ641Q2 1341 aa25.21■■□□□ 1.63
SNRPA1-203ENST00000540017 AMPHP49418 695 aa25.2■■□□□ 1.62
SNRPA1-203ENST00000540017 PEAK1Q9H792 1746 aa25.18■■□□□ 1.62
SNRPA1-203ENST00000540017 PARP4Q9UKK3 1724 aaKnown RBP25.18■■□□□ 1.62
SNRPA1-203ENST00000540017 LTV1Q96GA3 475 aaPredicted RBP25.18■■□□□ 1.62
SNRPA1-203ENST00000540017 NLRP2Q9NX02 1062 aa25.18■■□□□ 1.62
SNRPA1-203ENST00000540017 WNK3Q9BYP7 1800 aa25.17■■□□□ 1.62
SNRPA1-203ENST00000540017 DISP2A7MBM2 1401 aa25.16■■□□□ 1.62
SNRPA1-203ENST00000540017 ANKRD26Q9UPS8 1709 aa25.16■■□□□ 1.62
SNRPA1-203ENST00000540017 EMILIN1Q9Y6C2 1016 aa25.16■■□□□ 1.62
SNRPA1-203ENST00000540017 RTL1A6NKG5 1358 aa25.16■■□□□ 1.62
SNRPA1-203ENST00000540017 LRRC37A3O60309 1634 aa25.14■■□□□ 1.61
SNRPA1-203ENST00000540017 PDE3BQ13370 1112 aa25.13■■□□□ 1.61
SNRPA1-203ENST00000540017 HSP90AB2PQ58FF8 381 aa25.13■■□□□ 1.61
SNRPA1-203ENST00000540017 KNSTRNQ9Y448 316 aa25.13■■□□□ 1.61
SNRPA1-203ENST00000540017 PER1O15534 1290 aaPredicted RBP25.12■■□□□ 1.61
SNRPA1-203ENST00000540017 TNNT2P45379 298 aaPredicted RBP25.12■■□□□ 1.61
SNRPA1-203ENST00000540017 NSD2O96028 1365 aa25.11■■□□□ 1.61
SNRPA1-203ENST00000540017 AMER1Q5JTC6 1135 aaPredicted RBP25.11■■□□□ 1.61
SNRPA1-203ENST00000540017 CCDC125Q86Z20 511 aa25.11■■□□□ 1.61
SNRPA1-203ENST00000540017 RGPD2P0DJD1 1756 aa25.1■■□□□ 1.61
SNRPA1-203ENST00000540017 MAP2P11137 1827 aaKnown RBP25.1■■□□□ 1.61
SNRPA1-203ENST00000540017 FLT4P35916 1363 aa25.1■■□□□ 1.61
SNRPA1-203ENST00000540017 DDB1Q16531 1140 aa25.1■■□□□ 1.61
SNRPA1-203ENST00000540017 CDCA7Q9BWT1 371 aaPredicted RBP25.1■■□□□ 1.61
SNRPA1-203ENST00000540017 POLKQ9UBT6 870 aa25.1■■□□□ 1.61
SNRPA1-203ENST00000540017 INSRP06213 1382 aa25.09■■□□□ 1.61
SNRPA1-203ENST00000540017 KIF24Q5T7B8 1368 aa25.09■■□□□ 1.61
SNRPA1-203ENST00000540017 FAM208AQ9UK61 1670 aaKnown RBP25.09■■□□□ 1.61
SNRPA1-203ENST00000540017 PPM1GO15355 546 aaPredicted RBP25.08■■□□□ 1.61
SNRPA1-203ENST00000540017 NBPF6Q5VWK0 638 aa25.07■■□□□ 1.6
SNRPA1-203ENST00000540017 FAM196AQ6ZSG2 479 aa25.07■■□□□ 1.6
SNRPA1-203ENST00000540017 NBPF4Q96M43 638 aa25.07■■□□□ 1.6
SNRPA1-203ENST00000540017 IL2RBP14784 551 aa25.06■■□□□ 1.6
SNRPA1-203ENST00000540017 MORC1Q86VD1 984 aa25.06■■□□□ 1.6
SNRPA1-203ENST00000540017 MARCH10Q8NA82 808 aaPredicted RBP25.06■■□□□ 1.6
SNRPA1-203ENST00000540017 DEFB132Q7Z7B7 95 aa25.05■■□□□ 1.6
SNRPA1-203ENST00000540017 EXOC5O00471 708 aa25.04■■□□□ 1.6
SNRPA1-203ENST00000540017 TRIM37O94972 964 aa25.03■■□□□ 1.6
SNRPA1-203ENST00000540017 USHBP1Q8N6Y0 703 aa25.03■■□□□ 1.6
SNRPA1-203ENST00000540017 TNS2Q63HR2 1409 aa25.03■■□□□ 1.6
SNRPA1-203ENST00000540017 SMG6Q86US8 1419 aaKnown RBP25.02■■□□□ 1.6
SNRPA1-203ENST00000540017 SF3B2Q13435 895 aaKnown RBP25.01■■□□□ 1.59
SNRPA1-203ENST00000540017 OVOS2A0A0G2JMS6 1433 aa25.01■■□□□ 1.59
SNRPA1-203ENST00000540017 RGPD1P0DJD0 1748 aa25■■□□□ 1.59
SNRPA1-203ENST00000540017 TNS1Q9HBL0 1735 aaKnown RBP25■■□□□ 1.59
SNRPA1-203ENST00000540017 CC2D1BQ5T0F9 858 aaKnown RBP25■■□□□ 1.59
SNRPA1-203ENST00000540017 MEGF6O75095 1541 aa24.98■■□□□ 1.59
SNRPA1-203ENST00000540017 CNGB1Q14028 1251 aaPredicted RBP24.96■■□□□ 1.59
SNRPA1-203ENST00000540017 EIF4A2Q14240 407 aaKnown RBP24.96■■□□□ 1.59
SNRPA1-203ENST00000540017 SBF2Q86WG5 1849 aa24.96■■□□□ 1.59
SNRPA1-203ENST00000540017 EN1Q05925 392 aaPredicted RBP24.95■■□□□ 1.58
SNRPA1-203ENST00000540017 PTF1AQ7RTS3 328 aa24.95■■□□□ 1.58
SNRPA1-203ENST00000540017 EYA1Q99502 592 aa24.95■■□□□ 1.58
SNRPA1-203ENST00000540017 BCL9O00512 1426 aa24.95■■□□□ 1.58
SNRPA1-203ENST00000540017 NPC1L1Q9UHC9 1359 aa24.94■■□□□ 1.58
SNRPA1-203ENST00000540017 BAG6P46379 1132 aa24.94■■□□□ 1.58
SNRPA1-203ENST00000540017 NCAPD2Q15021 1401 aa24.94■■□□□ 1.58
SNRPA1-203ENST00000540017 APBA3O96018 575 aa24.92■■□□□ 1.58
SNRPA1-203ENST00000540017 ZCRB1Q8TBF4 217 aaKnown RBP24.91■■□□□ 1.58
SNRPA1-203ENST00000540017 DDX54Q8TDD1 881 aaKnown RBP24.91■■□□□ 1.58
SNRPA1-203ENST00000540017 SHANK3Q9BYB0 1731 aa24.91■■□□□ 1.58
SNRPA1-203ENST00000540017 RAPGEF4Q8WZA2 1011 aa24.9■■□□□ 1.58
SNRPA1-203ENST00000540017 CAMKK2Q96RR4 588 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms