RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 BCL9O00512 1426 aa16.9■□□□□ 0.3
CLSTN3-209ENST00000539982 PTGER2P43116 358 aa16.9■□□□□ 0.3
CLSTN3-209ENST00000539982 CABP1Q9NZU7 370 aa16.9■□□□□ 0.3
CLSTN3-209ENST00000539982 AXIN2Q9Y2T1 843 aa16.9■□□□□ 0.3
CLSTN3-209ENST00000539982 LRRC37A3O60309 1634 aa16.89■□□□□ 0.29
CLSTN3-209ENST00000539982 ATF5Q9Y2D1 282 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-209ENST00000539982 KIAA1210Q9ULL0 1709 aa16.89■□□□□ 0.29
CLSTN3-209ENST00000539982 WDR17Q8IZU2 1322 aa16.89■□□□□ 0.29
CLSTN3-209ENST00000539982 CENPJQ9HC77 1338 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-209ENST00000539982 ZNF784Q8NCA9 323 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-209ENST00000539982 STK32BQ9NY57 414 aa16.88■□□□□ 0.29
CLSTN3-209ENST00000539982 USP6P35125 1406 aa16.87■□□□□ 0.29
CLSTN3-209ENST00000539982 SLIT3O75094 1523 aa16.87■□□□□ 0.29
CLSTN3-209ENST00000539982 SLC15A2Q16348 729 aa16.87■□□□□ 0.29
CLSTN3-209ENST00000539982 TXNRD1Q16881 649 aa16.87■□□□□ 0.29
CLSTN3-209ENST00000539982 EXOC5O00471 708 aa16.86■□□□□ 0.29
CLSTN3-209ENST00000539982 SYT17Q9BSW7 474 aa16.86■□□□□ 0.29
CLSTN3-209ENST00000539982 CARD10Q9BWT7 1032 aa16.86■□□□□ 0.29
CLSTN3-209ENST00000539982 COL18A1P39060 1754 aa16.86■□□□□ 0.29
CLSTN3-209ENST00000539982 ARHGEF25Q86VW2 580 aa16.85■□□□□ 0.29
CLSTN3-209ENST00000539982 FHDC1Q9C0D6 1143 aaPredicted RBP16.85■□□□□ 0.29
CLSTN3-209ENST00000539982 KCNH5Q8NCM2 988 aa16.84■□□□□ 0.29
CLSTN3-209ENST00000539982 CSB-PGBD3P0DP91 1061 aa16.83■□□□□ 0.28
CLSTN3-209ENST00000539982 MYOM1P52179 1685 aa16.83■□□□□ 0.28
CLSTN3-209ENST00000539982 MTFR1LQ9H019 292 aa16.83■□□□□ 0.28
CLSTN3-209ENST00000539982 CPSF1Q10570 1443 aaKnown RBP16.82■□□□□ 0.28
CLSTN3-209ENST00000539982 SGIP1Q9BQI5 828 aa16.82■□□□□ 0.28
CLSTN3-209ENST00000539982 ZNF692Q9BU19 519 aaPredicted RBP16.82■□□□□ 0.28
CLSTN3-209ENST00000539982 AKAP12Q02952 1782 aa16.82■□□□□ 0.28
CLSTN3-209ENST00000539982 WNK3Q9BYP7 1800 aa16.81■□□□□ 0.28
CLSTN3-209ENST00000539982 PIK3C2AO00443 1686 aa16.79■□□□□ 0.28
CLSTN3-209ENST00000539982 TTC21BQ7Z4L5 1316 aa16.79■□□□□ 0.28
CLSTN3-209ENST00000539982 EVC2Q86UK5 1308 aa16.79■□□□□ 0.28
CLSTN3-209ENST00000539982 UTRNP46939 3433 aa16.79■□□□□ 0.28
CLSTN3-209ENST00000539982 CCDC7Q96M83 1385 aa16.78■□□□□ 0.28
CLSTN3-209ENST00000539982 SOX12O15370 315 aa16.78■□□□□ 0.28
CLSTN3-209ENST00000539982 ARXQ96QS3 562 aa16.78■□□□□ 0.28
CLSTN3-209ENST00000539982 QRICH2Q9H0J4 1663 aa16.78■□□□□ 0.28
CLSTN3-209ENST00000539982 RGPD5Q99666 1765 aa16.77■□□□□ 0.28
CLSTN3-209ENST00000539982 C1QTNF8P60827 252 aa16.77■□□□□ 0.28
CLSTN3-209ENST00000539982 TTC21AQ8NDW8 1320 aa16.76■□□□□ 0.27
CLSTN3-209ENST00000539982 SENP3-EIF4A1A0A087X0R7 540 aa16.76■□□□□ 0.27
CLSTN3-209ENST00000539982 CHD4Q14839 1912 aa16.76■□□□□ 0.27
CLSTN3-209ENST00000539982 ACSBG1Q96GR2 724 aa16.75■□□□□ 0.27
CLSTN3-209ENST00000539982 MAP3K5Q99683 1374 aa16.74■□□□□ 0.27
CLSTN3-209ENST00000539982 TNS2Q63HR2 1409 aa16.73■□□□□ 0.27
CLSTN3-209ENST00000539982 TRPM1Q7Z4N2 1603 aa16.73■□□□□ 0.27
CLSTN3-209ENST00000539982 NHSQ6T4R5 1651 aa16.72■□□□□ 0.27
CLSTN3-209ENST00000539982 NFAT5O94916 1531 aa16.71■□□□□ 0.27
CLSTN3-209ENST00000539982 IL2RBP14784 551 aa16.71■□□□□ 0.27
CLSTN3-209ENST00000539982 GPR162Q16538 588 aa16.71■□□□□ 0.27
CLSTN3-209ENST00000539982 NLRP2Q9NX02 1062 aa16.71■□□□□ 0.27
CLSTN3-209ENST00000539982 KTN1Q86UP2 1357 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-209ENST00000539982 ABCC6O95255 1503 aa16.7■□□□□ 0.26
CLSTN3-209ENST00000539982 ZNF827Q17R98 1081 aa16.7■□□□□ 0.26
CLSTN3-209ENST00000539982 SLC16A10Q8TF71 515 aa16.7■□□□□ 0.26
CLSTN3-209ENST00000539982 L3MBTL2Q969R5 705 aa16.69■□□□□ 0.26
CLSTN3-209ENST00000539982 LRRC4BQ9NT99 713 aa16.69■□□□□ 0.26
CLSTN3-209ENST00000539982 PAPPAQ13219 1627 aa16.69■□□□□ 0.26
CLSTN3-209ENST00000539982 ERBB3P21860 1342 aa16.69■□□□□ 0.26
CLSTN3-209ENST00000539982 USP31Q70CQ4 1352 aa16.67■□□□□ 0.26
CLSTN3-209ENST00000539982 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.67■□□□□ 0.26
CLSTN3-209ENST00000539982 AKT1S1Q96B36 256 aa16.67■□□□□ 0.26
CLSTN3-209ENST00000539982 POLD1P28340 1107 aa16.66■□□□□ 0.26
CLSTN3-209ENST00000539982 SLC27A3Q5K4L6 730 aa16.66■□□□□ 0.26
CLSTN3-209ENST00000539982 BTAF1O14981 1849 aa16.66■□□□□ 0.26
CLSTN3-209ENST00000539982 GIGYF1O75420 1035 aaPredicted RBP16.65■□□□□ 0.26
CLSTN3-209ENST00000539982 ANKRD24Q8TF21 1146 aa16.65■□□□□ 0.26
CLSTN3-209ENST00000539982 KAT6BQ8WYB5 2073 aa16.65■□□□□ 0.26
CLSTN3-209ENST00000539982 NME9Q86XW9 330 aa16.64■□□□□ 0.25
CLSTN3-209ENST00000539982 KLHL34Q8N239 644 aa16.64■□□□□ 0.25
CLSTN3-209ENST00000539982 ROCK2O75116 1388 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-209ENST00000539982 PELP1Q8IZL8 1130 aaKnown RBP16.62■□□□□ 0.25
CLSTN3-209ENST00000539982 DDX54Q8TDD1 881 aaKnown RBP16.62■□□□□ 0.25
CLSTN3-209ENST00000539982 TFCP2L1Q9NZI6 479 aa16.62■□□□□ 0.25
CLSTN3-209ENST00000539982 PNPLA7Q6ZV29 1317 aa16.62■□□□□ 0.25
CLSTN3-209ENST00000539982 IFFO2Q5TF58 517 aa16.61■□□□□ 0.25
CLSTN3-209ENST00000539982 MON2Q7Z3U7 1717 aa16.61■□□□□ 0.25
CLSTN3-209ENST00000539982 QSER1Q2KHR3 1735 aa16.6■□□□□ 0.25
CLSTN3-209ENST00000539982 SBNO2Q9Y2G9 1366 aa16.6■□□□□ 0.25
CLSTN3-209ENST00000539982 USP54Q70EL1 1684 aa16.59■□□□□ 0.25
CLSTN3-209ENST00000539982 COL24A1Q17RW2 1714 aa16.59■□□□□ 0.25
CLSTN3-209ENST00000539982 NLGN2Q8NFZ4 835 aa16.59■□□□□ 0.25
CLSTN3-209ENST00000539982 LTN1O94822 1766 aa16.59■□□□□ 0.25
CLSTN3-209ENST00000539982 GRIN3BO60391 1043 aa16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 PRIM1P49642 420 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 KCNQ4P56696 695 aa16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 HDGFL2Q7Z4V5 671 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 TMC1Q8TDI8 760 aa16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 IP6K1Q92551 441 aa16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 CD163L1Q9NR16 1453 aa16.58■□□□□ 0.24
CLSTN3-209ENST00000539982 SYTL4Q96C24 671 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-209ENST00000539982 SIN3AQ96ST3 1273 aa16.57■□□□□ 0.24
CLSTN3-209ENST00000539982 SLC12A5Q9H2X9 1139 aa16.57■□□□□ 0.24
CLSTN3-209ENST00000539982 GOLGB1Q14789 3259 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-209ENST00000539982 ANKRD36BQ8N2N9 1353 aa16.55■□□□□ 0.24
CLSTN3-209ENST00000539982 YBX3P16989 372 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLSTN3-209ENST00000539982 LTV1Q96GA3 475 aaPredicted RBP16.55■□□□□ 0.24
CLSTN3-209ENST00000539982 EDC4Q6P2E9 1401 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-209ENST00000539982 NEUROD1Q13562 356 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms