RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 ANKRD36BQ8N2N9 1353 aa26.58■■□□□ 1.84
CLIP1-211ENST00000539080 TCP11L2Q8N4U5 519 aa26.57■■□□□ 1.84
CLIP1-211ENST00000539080 USP35Q9P2H5 1018 aa26.56■■□□□ 1.84
CLIP1-211ENST00000539080 ZRANB1Q9UGI0 708 aa26.55■■□□□ 1.84
CLIP1-211ENST00000539080 OVOS2A0A0J9YW53 1432 aa26.55■■□□□ 1.84
CLIP1-211ENST00000539080 OVOS2Q6IE36 1432 aa26.55■■□□□ 1.84
CLIP1-211ENST00000539080 SOX12O15370 315 aa26.54■■□□□ 1.84
CLIP1-211ENST00000539080 AXIN2Q9Y2T1 843 aa26.53■■□□□ 1.84
CLIP1-211ENST00000539080 WDR17Q8IZU2 1322 aa26.52■■□□□ 1.84
CLIP1-211ENST00000539080 RGPD5Q99666 1765 aa26.52■■□□□ 1.84
CLIP1-211ENST00000539080 PARP4Q9UKK3 1724 aaKnown RBP26.51■■□□□ 1.83
CLIP1-211ENST00000539080 SF3B2Q13435 895 aaKnown RBP26.51■■□□□ 1.83
CLIP1-211ENST00000539080 LTN1O94822 1766 aa26.51■■□□□ 1.83
CLIP1-211ENST00000539080 TOM1L2Q6ZVM7 507 aa26.49■■□□□ 1.83
CLIP1-211ENST00000539080 MYOM1P52179 1685 aa26.48■■□□□ 1.83
CLIP1-211ENST00000539080 RGPD1P0DJD0 1748 aa26.48■■□□□ 1.83
CLIP1-211ENST00000539080 EIF4G2P78344 907 aaKnown RBP eCLIP26.47■■□□□ 1.83
CLIP1-211ENST00000539080 PDE3BQ13370 1112 aa26.46■■□□□ 1.83
CLIP1-211ENST00000539080 COG3Q96JB2 828 aa26.46■■□□□ 1.83
CLIP1-211ENST00000539080 WNK3Q9BYP7 1800 aa26.46■■□□□ 1.83
CLIP1-211ENST00000539080 FAM196AQ6ZSG2 479 aa26.45■■□□□ 1.82
CLIP1-211ENST00000539080 CARD10Q9BWT7 1032 aa26.44■■□□□ 1.82
CLIP1-211ENST00000539080 CSB-PGBD3P0DP91 1061 aa26.43■■□□□ 1.82
CLIP1-211ENST00000539080 CDCA7Q9BWT1 371 aaPredicted RBP26.43■■□□□ 1.82
CLIP1-211ENST00000539080 FAM182BQ5T319 152 aa26.42■■□□□ 1.82
CLIP1-211ENST00000539080 LRRC37A3O60309 1634 aa26.41■■□□□ 1.82
CLIP1-211ENST00000539080 CCDC7Q96M83 1385 aa26.41■■□□□ 1.82
CLIP1-211ENST00000539080 KIF20BQ96Q89 1820 aa26.41■■□□□ 1.82
CLIP1-211ENST00000539080 ERBB3P21860 1342 aa26.4■■□□□ 1.82
CLIP1-211ENST00000539080 C11orf95C9JLR9 678 aaPredicted RBP26.4■■□□□ 1.82
CLIP1-211ENST00000539080 BAG6P46379 1132 aa26.4■■□□□ 1.82
CLIP1-211ENST00000539080 TNS1Q9HBL0 1735 aaKnown RBP26.39■■□□□ 1.82
CLIP1-211ENST00000539080 FYB1O15117 783 aa26.39■■□□□ 1.82
CLIP1-211ENST00000539080 HSPA5P11021 654 aaKnown RBP26.39■■□□□ 1.82
CLIP1-211ENST00000539080 DEFB132Q7Z7B7 95 aa26.39■■□□□ 1.82
CLIP1-211ENST00000539080 DISP2A7MBM2 1401 aa26.38■■□□□ 1.81
CLIP1-211ENST00000539080 DDB1Q16531 1140 aa26.37■■□□□ 1.81
CLIP1-211ENST00000539080 IP6K1Q92551 441 aa26.37■■□□□ 1.81
CLIP1-211ENST00000539080 FAM208AQ9UK61 1670 aaKnown RBP26.36■■□□□ 1.81
CLIP1-211ENST00000539080 OVOS2A0A0G2JMS6 1433 aa26.34■■□□□ 1.81
CLIP1-211ENST00000539080 NSD3Q9BZ95 1437 aa26.34■■□□□ 1.81
CLIP1-211ENST00000539080 ANKRD24Q8TF21 1146 aa26.34■■□□□ 1.81
CLIP1-211ENST00000539080 CARD14Q9BXL6 1004 aa26.34■■□□□ 1.81
CLIP1-211ENST00000539080 GGNBP2Q9H3C7 697 aa26.34■■□□□ 1.81
CLIP1-211ENST00000539080 PEAK1Q9H792 1746 aa26.34■■□□□ 1.81
CLIP1-211ENST00000539080 MAP3K19Q56UN5 1328 aa26.33■■□□□ 1.81
CLIP1-211ENST00000539080 RTL1A6NKG5 1358 aa26.33■■□□□ 1.8
CLIP1-211ENST00000539080 TRIM37O94972 964 aa26.31■■□□□ 1.8
CLIP1-211ENST00000539080 NLRP2Q9NX02 1062 aa26.31■■□□□ 1.8
CLIP1-211ENST00000539080 AMPHP49418 695 aa26.3■■□□□ 1.8
CLIP1-211ENST00000539080 HOXC9P31274 260 aa26.29■■□□□ 1.8
CLIP1-211ENST00000539080 BCL9O00512 1426 aa26.29■■□□□ 1.8
CLIP1-211ENST00000539080 EXOC5O00471 708 aa26.27■■□□□ 1.8
CLIP1-211ENST00000539080 EN1Q05925 392 aaPredicted RBP26.27■■□□□ 1.8
CLIP1-211ENST00000539080 POLR3GLQ9BT43 218 aa26.27■■□□□ 1.8
CLIP1-211ENST00000539080 CGNL1Q0VF96 1302 aa26.27■■□□□ 1.8
CLIP1-211ENST00000539080 KIF24Q5T7B8 1368 aa26.27■■□□□ 1.8
CLIP1-211ENST00000539080 PARD3Q8TEW0 1356 aa26.27■■□□□ 1.8
CLIP1-211ENST00000539080 TNS2Q63HR2 1409 aa26.27■■□□□ 1.8
CLIP1-211ENST00000539080 FBLN1P23142 703 aa26.26■■□□□ 1.79
CLIP1-211ENST00000539080 SBF2Q86WG5 1849 aa26.25■■□□□ 1.79
CLIP1-211ENST00000539080 IL2RBP14784 551 aa26.25■■□□□ 1.79
CLIP1-211ENST00000539080 APBA3O96018 575 aa26.24■■□□□ 1.79
CLIP1-211ENST00000539080 RRS1Q15050 365 aaKnown RBP26.24■■□□□ 1.79
CLIP1-211ENST00000539080 MARCH10Q8NA82 808 aaPredicted RBP26.24■■□□□ 1.79
CLIP1-211ENST00000539080 CAMKK2Q96RR4 588 aa26.22■■□□□ 1.79
CLIP1-211ENST00000539080 LTV1Q96GA3 475 aaPredicted RBP26.21■■□□□ 1.79
CLIP1-211ENST00000539080 ANKRD26Q9UPS8 1709 aa26.21■■□□□ 1.79
CLIP1-211ENST00000539080 SMG6Q86US8 1419 aaKnown RBP26.21■■□□□ 1.79
CLIP1-211ENST00000539080 FLT4P35916 1363 aa26.2■■□□□ 1.79
CLIP1-211ENST00000539080 RGPD3A6NKT7 1758 aaPredicted RBP26.2■■□□□ 1.78
CLIP1-211ENST00000539080 RGPD4Q7Z3J3 1758 aa26.2■■□□□ 1.78
CLIP1-211ENST00000539080 INSRP06213 1382 aa26.2■■□□□ 1.78
CLIP1-211ENST00000539080 RREB1Q92766 1687 aa26.19■■□□□ 1.78
CLIP1-211ENST00000539080 EZH2Q15910 746 aaKnown RBP26.19■■□□□ 1.78
CLIP1-211ENST00000539080 BCL11BQ9C0K0 894 aaPredicted RBP26.18■■□□□ 1.78
CLIP1-211ENST00000539080 PANK3Q9H999 370 aa26.17■■□□□ 1.78
CLIP1-211ENST00000539080 RGPD2P0DJD1 1756 aa26.17■■□□□ 1.78
CLIP1-211ENST00000539080 NSD2O96028 1365 aa26.15■■□□□ 1.78
CLIP1-211ENST00000539080 PLSCR1O15162 318 aa26.13■■□□□ 1.77
CLIP1-211ENST00000539080 HSP90AB2PQ58FF8 381 aa26.13■■□□□ 1.77
CLIP1-211ENST00000539080 MAP2P11137 1827 aaKnown RBP26.13■■□□□ 1.77
CLIP1-211ENST00000539080 NUP188Q5SRE5 1749 aa26.12■■□□□ 1.77
CLIP1-211ENST00000539080 EMILIN1Q9Y6C2 1016 aa26.12■■□□□ 1.77
CLIP1-211ENST00000539080 NHSQ6T4R5 1651 aa26.12■■□□□ 1.77
CLIP1-211ENST00000539080 NBPF6Q5VWK0 638 aa26.11■■□□□ 1.77
CLIP1-211ENST00000539080 NBPF4Q96M43 638 aa26.11■■□□□ 1.77
CLIP1-211ENST00000539080 KIF7Q2M1P5 1343 aa26.11■■□□□ 1.77
CLIP1-211ENST00000539080 WASHC2AQ641Q2 1341 aa26.09■■□□□ 1.77
CLIP1-211ENST00000539080 MEGF6O75095 1541 aa26.08■■□□□ 1.77
CLIP1-211ENST00000539080 POLKQ9UBT6 870 aa26.07■■□□□ 1.76
CLIP1-211ENST00000539080 PTF1AQ7RTS3 328 aa26.06■■□□□ 1.76
CLIP1-211ENST00000539080 KNSTRNQ9Y448 316 aa26.06■■□□□ 1.76
CLIP1-211ENST00000539080 SHANK3Q9BYB0 1731 aa26.05■■□□□ 1.76
CLIP1-211ENST00000539080 PPM1GO15355 546 aaPredicted RBP26.05■■□□□ 1.76
CLIP1-211ENST00000539080 NBPF14Q5TI25 921 aa26.05■■□□□ 1.76
CLIP1-211ENST00000539080 RAPGEF4Q8WZA2 1011 aa26.05■■□□□ 1.76
CLIP1-211ENST00000539080 PSDA5PKW4 1024 aaPredicted RBP26.04■■□□□ 1.76
CLIP1-211ENST00000539080 ZCRB1Q8TBF4 217 aaKnown RBP26.04■■□□□ 1.76
CLIP1-211ENST00000539080 DDX54Q8TDD1 881 aaKnown RBP26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms