RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 SSFA2P28290 1259 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 LRRFIP1Q32MZ4 808 aaKnown RBP6.67□□□□□ -1.34
CSMD1-215ENST00000537824 CEP135Q66GS9 1140 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 CCDC148Q8NFR7 591 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 SPATA24Q86W54 205 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 WIZO95785 1651 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 CITO14578 2027 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 IVLP07476 585 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 URI1O94763 535 aaPredicted RBP6.67□□□□□ -1.34
CSMD1-215ENST00000537824 CEP63Q96MT8 703 aa6.67□□□□□ -1.34
CSMD1-215ENST00000537824 API5Q9BZZ5 524 aaKnown RBP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 NAA25Q14CX7 972 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 BANK1Q8NDB2 785 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 MYH3P11055 1940 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 TMX1Q9H3N1 280 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 ERC2O15083 957 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 EPB41L2O43491 1005 aaKnown RBP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 TRDNQ13061 729 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 DRC1Q96MC2 740 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 ATP2C2O75185 946 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 TNPO1Q92973 898 aaKnown RBP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 XRCC6P12956 609 aaKnown RBP eCLIP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 RASSF4Q9H2L5 321 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 C9orf78Q9NZ63 289 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 CEP57Q86XR8 500 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 USP25Q9UHP3 1055 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 ADCY5O95622 1261 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 CCDC175P0C221 793 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 SNW1Q13573 536 aaKnown RBP6.66□□□□□ -1.34
CSMD1-215ENST00000537824 PSMA5P28066 241 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 SCLT1Q96NL6 688 aa6.66□□□□□ -1.34
CSMD1-215ENST00000537824 CLNS1AP54105 237 aaKnown RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 ARHGAP29Q52LW3 1261 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 ZNF830Q96NB3 372 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 RRAGDQ9NQL2 400 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 TERF2IPQ9NYB0 399 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 LIG1P18858 919 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 TXLNAP40222 546 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 UPF3BQ9BZI7 483 aaKnown RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 C1orf115Q9H7X2 142 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 MAP2K1Q02750 393 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 GBP6Q6ZN66 633 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 MPHOSPH10O00566 681 aaKnown RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 BCCIPQ9P287 314 aaKnown RBP eCLIP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 A0A1B0GUL7 405 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 LUC7LQ9NQ29 371 aaKnown RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 WDR66Q8TBY9 1149 aa6.65□□□□□ -1.34
CSMD1-215ENST00000537824 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 V9GYY5 206 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-215ENST00000537824 KIF5CO60282 957 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 G3BP1Q13283 466 aaKnown RBP eCLIP6.65□□□□□ -1.35
CSMD1-215ENST00000537824 SKAP1Q86WV1 359 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 MICALL1Q8N3F8 863 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 CLIP2Q9UDT6 1046 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 TCEAL9Q9UHQ7 104 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 KIF20AO95235 890 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 MCM3P25205 808 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 MCM6Q14566 821 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 IFFO1Q0D2I5 559 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 STIM1Q13586 685 aa6.65□□□□□ -1.35
CSMD1-215ENST00000537824 LTV1Q96GA3 475 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-215ENST00000537824 CCDC88CQ9P219 2028 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 CCDC113Q9H0I3 377 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 POTEB2H3BUK9 544 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 CAMK4Q16566 473 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 NECTIN2Q92692 538 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 HSPA4P34932 840 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 JMYQ8N9B5 988 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 TBC1D2Q9BYX2 928 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 WASHC2AQ641Q2 1341 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 ZSCAN12O43309 604 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 NGEFQ8N5V2 710 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 TMCO5BA8MYB1 307 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 ASCC3Q8N3C0 2202 aaKnown RBP6.64□□□□□ -1.35
CSMD1-215ENST00000537824 ARFGAP3Q9NP61 516 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 CFAP100Q494V2 611 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 RALYLQ86SE5 291 aaKnown RBP6.64□□□□□ -1.35
CSMD1-215ENST00000537824 CACNA1CQ13936 2221 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 CHMP7Q8WUX9 453 aaPredicted RBP6.64□□□□□ -1.35
CSMD1-215ENST00000537824 TAF4BQ92750 862 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 RUNDC1Q96C34 613 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 SPATA32Q96LK8 384 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 MYH13Q9UKX3 1938 aa6.64□□□□□ -1.35
CSMD1-215ENST00000537824 CCDC88BA6NC98 1476 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 ARID4AP29374 1257 aaPredicted RBP6.63□□□□□ -1.35
CSMD1-215ENST00000537824 CNTROBQ8N137 903 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 GTF3C6Q969F1 213 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 ZSWIM4Q9H7M6 989 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 ANKRD30AQ9BXX3 1397 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 ASXL3Q9C0F0 2248 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 KIF4BQ2VIQ3 1234 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 CCDC171Q6TFL3 1326 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 NEMFO60524 1076 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 LARP1BQ659C4 914 aaKnown RBP6.63□□□□□ -1.35
CSMD1-215ENST00000537824 PAXBP1Q9Y5B6 917 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 ZBTB9Q96C00 473 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 KIAA0100Q14667 2235 aaKnown RBP6.63□□□□□ -1.35
CSMD1-215ENST00000537824 MSL1Q68DK7 614 aa6.63□□□□□ -1.35
CSMD1-215ENST00000537824 LRCH2Q5VUJ6 765 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms