RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 EML3Q32P44 896 aa9.59□□□□□ -0.87
PRKDC-208ENST00000536710 MAP7D1Q3KQU3 841 aa9.59□□□□□ -0.87
PRKDC-208ENST00000536710 PHTF2Q8N3S3 785 aa9.59□□□□□ -0.87
PRKDC-208ENST00000536710 RNF166Q96A37 237 aaPredicted RBP9.59□□□□□ -0.87
PRKDC-208ENST00000536710 GIGYF1O75420 1035 aaPredicted RBP9.58□□□□□ -0.88
PRKDC-208ENST00000536710 SH3BP2P78314 561 aa9.58□□□□□ -0.88
PRKDC-208ENST00000536710 C4orf48Q5BLP8 95 aa9.58□□□□□ -0.88
PRKDC-208ENST00000536710 NOVA2Q9UNW9 492 aaKnown RBP9.58□□□□□ -0.88
PRKDC-208ENST00000536710 DOLKQ9UPQ8 538 aa9.58□□□□□ -0.88
PRKDC-208ENST00000536710 RNF223E7ERA6 249 aa9.57□□□□□ -0.88
PRKDC-208ENST00000536710 ATP5J2-PTCD1G3V325 749 aa9.57□□□□□ -0.88
PRKDC-208ENST00000536710 LZTS3O60299 673 aaPredicted RBP9.57□□□□□ -0.88
PRKDC-208ENST00000536710 BRD1O95696 1058 aa9.57□□□□□ -0.88
PRKDC-208ENST00000536710 TSGA10IPQ3SY00 556 aa9.57□□□□□ -0.88
PRKDC-208ENST00000536710 OXLD1Q5BKU9 147 aa9.57□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L15C9J2P7 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L10C9JJH3 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L13C9JLJ4 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L12C9JPN9 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L11C9JVI0 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L21D6R901 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L18D6R9N7 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L22D6RA61 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L17D6RBQ6 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L19D6RCP7 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L20D6RJB6 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 USP17L24Q0WX57 530 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 NBPF20Q3BBV1 942 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 CRTC2Q53ET0 693 aaPredicted RBP9.56□□□□□ -0.88
PRKDC-208ENST00000536710 RNF20Q5VTR2 975 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 STK32AQ8WU08 396 aa9.56□□□□□ -0.88
PRKDC-208ENST00000536710 CCDC9Q9Y3X0 531 aaKnown RBP9.56□□□□□ -0.88
PRKDC-208ENST00000536710 TMEM88BA6NKF7 163 aa9.55□□□□□ -0.88
PRKDC-208ENST00000536710 FAM196BA6NMK8 535 aa9.55□□□□□ -0.88
PRKDC-208ENST00000536710 PATL2C9JE40 543 aaKnown RBP9.55□□□□□ -0.88
PRKDC-208ENST00000536710 ITGBL1O95965 494 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-208ENST00000536710 RAB15P59190 212 aa9.55□□□□□ -0.88
PRKDC-208ENST00000536710 TRIM32Q13049 653 aa9.55□□□□□ -0.88
PRKDC-208ENST00000536710 ELOAQ14241 798 aaKnown RBP9.55□□□□□ -0.88
PRKDC-208ENST00000536710 CCDC85AQ96PX6 553 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-208ENST00000536710 GZF1Q9H116 711 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-208ENST00000536710 ZMIZ1Q9ULJ6 1067 aa9.55□□□□□ -0.88
PRKDC-208ENST00000536710 NOD1Q9Y239 953 aa9.55□□□□□ -0.88
PRKDC-208ENST00000536710 TMEM164Q5U3C3 297 aa9.54□□□□□ -0.88
PRKDC-208ENST00000536710 TRAF7Q6Q0C0 670 aa9.54□□□□□ -0.88
PRKDC-208ENST00000536710 TRIM50Q86XT4 487 aa9.54□□□□□ -0.88
PRKDC-208ENST00000536710 ANKLE1Q8NAG6 615 aa9.54□□□□□ -0.88
PRKDC-208ENST00000536710 ZNF594Q96JF6 807 aaPredicted RBP9.54□□□□□ -0.88
PRKDC-208ENST00000536710 KCNA1Q09470 495 aa9.53□□□□□ -0.88
PRKDC-208ENST00000536710 OGFOD1Q8N543 542 aa9.53□□□□□ -0.88
PRKDC-208ENST00000536710 FAM200AQ8TCP9 573 aa9.53□□□□□ -0.88
PRKDC-208ENST00000536710 CHIC2Q9UKJ5 165 aa9.53□□□□□ -0.88
PRKDC-208ENST00000536710 ATP1A2P50993 1020 aa9.52□□□□□ -0.89
PRKDC-208ENST00000536710 PTK7Q13308 1070 aa9.52□□□□□ -0.89
PRKDC-208ENST00000536710 PLA2G2CQ5R387 149 aa9.52□□□□□ -0.89
PRKDC-208ENST00000536710 C1QTNF2Q9BXJ5 285 aa9.52□□□□□ -0.89
PRKDC-208ENST00000536710 DNAAF2Q9NVR5 837 aaKnown RBP9.52□□□□□ -0.89
PRKDC-208ENST00000536710 CDV3Q9UKY7 258 aaKnown RBP9.52□□□□□ -0.89
PRKDC-208ENST00000536710 PCDHB11Q9Y5F2 797 aa9.52□□□□□ -0.89
PRKDC-208ENST00000536710 PSME1Q06323 249 aa9.51□□□□□ -0.89
PRKDC-208ENST00000536710 B4GALNT3Q6L9W6 998 aa9.51□□□□□ -0.89
PRKDC-208ENST00000536710 PPP1R18Q6NYC8 613 aa9.51□□□□□ -0.89
PRKDC-208ENST00000536710 ANKMY2Q8IV38 441 aa9.51□□□□□ -0.89
PRKDC-208ENST00000536710 RBM19Q9Y4C8 960 aaKnown RBP9.51□□□□□ -0.89
PRKDC-208ENST00000536710 ARID5BQ14865 1188 aa9.5□□□□□ -0.89
PRKDC-208ENST00000536710 VASH1Q7L8A9 365 aaPredicted RBP9.5□□□□□ -0.89
PRKDC-208ENST00000536710 SPNS2Q8IVW8 549 aa9.5□□□□□ -0.89
PRKDC-208ENST00000536710 TRMT44Q8IYL2 757 aaKnown RBP9.5□□□□□ -0.89
PRKDC-208ENST00000536710 KCTD15Q96SI1 283 aaPredicted RBP9.5□□□□□ -0.89
PRKDC-208ENST00000536710 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.5□□□□□ -0.89
PRKDC-208ENST00000536710 VARSP26640 1264 aaKnown RBP9.49□□□□□ -0.89
PRKDC-208ENST00000536710 WNT7BP56706 349 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 GTF2IP78347 998 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 CLDN10P78369 228 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 SKOR1P84550 965 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 DPYDQ12882 1025 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 TMCO4Q5TGY1 634 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 SEPT12Q8IYM1 358 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 EHBP1Q8NDI1 1231 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 SIRT1Q96EB6 747 aa9.49□□□□□ -0.89
PRKDC-208ENST00000536710 CDCA7Q9BWT1 371 aaPredicted RBP9.49□□□□□ -0.89
PRKDC-208ENST00000536710 USP4Q13107 963 aa9.48□□□□□ -0.89
PRKDC-208ENST00000536710 PCDH10Q9P2E7 1040 aa9.48□□□□□ -0.89
PRKDC-208ENST00000536710 ESPNB1AK53 854 aa9.47□□□□□ -0.89
PRKDC-208ENST00000536710 CD2BP2O95400 341 aaKnown RBP9.47□□□□□ -0.89
PRKDC-208ENST00000536710 RPIAP49247 311 aa9.47□□□□□ -0.89
PRKDC-208ENST00000536710 LARGE2Q8N3Y3 721 aa9.47□□□□□ -0.89
PRKDC-208ENST00000536710 ESF1Q9H501 851 aaKnown RBP9.47□□□□□ -0.89
PRKDC-208ENST00000536710 IVNS1ABPQ9Y6Y0 642 aa9.47□□□□□ -0.89
PRKDC-208ENST00000536710 KIAA1024Q9UPX6 916 aa9.46□□□□□ -0.9
PRKDC-208ENST00000536710 MYCP01106 439 aaPredicted RBP9.45□□□□□ -0.9
PRKDC-208ENST00000536710 RC3H1Q5TC82 1133 aaKnown RBP9.45□□□□□ -0.9
PRKDC-208ENST00000536710 CCDC125Q86Z20 511 aa9.45□□□□□ -0.9
PRKDC-208ENST00000536710 TPCN2Q8NHX9 752 aa9.45□□□□□ -0.9
PRKDC-208ENST00000536710 INTS6LQ5JSJ4 861 aaKnown RBP9.44□□□□□ -0.9
PRKDC-208ENST00000536710 CCDC102BQ68D86 513 aa9.44□□□□□ -0.9
PRKDC-208ENST00000536710 MAP4K5Q9Y4K4 846 aa9.44□□□□□ -0.9
PRKDC-208ENST00000536710 ZBTB7BO15156 539 aaPredicted RBP9.43□□□□□ -0.9
PRKDC-208ENST00000536710 SEC13P55735 322 aa9.43□□□□□ -0.9
PRKDC-208ENST00000536710 SIX5Q8N196 739 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms