RNA–Protein interactions for RNA: ENST00000534373.5

CAPN1-228, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-228ENST00000534373 WDR17Q8IZU2 1322 aa18.85■□□□□ 0.61
CAPN1-228ENST00000534373 TOM1L2Q6ZVM7 507 aa18.85■□□□□ 0.61
CAPN1-228ENST00000534373 COL18A1P39060 1754 aa18.85■□□□□ 0.61
CAPN1-228ENST00000534373 EDC4Q6P2E9 1401 aaKnown RBP18.84■□□□□ 0.61
CAPN1-228ENST00000534373 RGPD1P0DJD0 1748 aa18.84■□□□□ 0.61
CAPN1-228ENST00000534373 CDCA7Q9BWT1 371 aaPredicted RBP18.84■□□□□ 0.61
CAPN1-228ENST00000534373 SOX12O15370 315 aa18.82■□□□□ 0.6
CAPN1-228ENST00000534373 TRIM37O94972 964 aa18.82■□□□□ 0.6
CAPN1-228ENST00000534373 EN1Q05925 392 aaPredicted RBP18.82■□□□□ 0.6
CAPN1-228ENST00000534373 NME9Q86XW9 330 aa18.82■□□□□ 0.6
CAPN1-228ENST00000534373 CARD10Q9BWT7 1032 aa18.82■□□□□ 0.6
CAPN1-228ENST00000534373 ABCC6O95255 1503 aa18.82■□□□□ 0.6
CAPN1-228ENST00000534373 SRCAPQ6ZRS2 3230 aa18.82■□□□□ 0.6
CAPN1-228ENST00000534373 A0A1W2PP64 1363 aa18.81■□□□□ 0.6
CAPN1-228ENST00000534373 NFAT5O94916 1531 aa18.81■□□□□ 0.6
CAPN1-228ENST00000534373 TMF1P82094 1093 aa18.81■□□□□ 0.6
CAPN1-228ENST00000534373 DDB1Q16531 1140 aa18.8■□□□□ 0.6
CAPN1-228ENST00000534373 PARP4Q9UKK3 1724 aaKnown RBP18.8■□□□□ 0.6
CAPN1-228ENST00000534373 USP54Q70EL1 1684 aa18.79■□□□□ 0.6
CAPN1-228ENST00000534373 CSB-PGBD3P0DP91 1061 aa18.79■□□□□ 0.6
CAPN1-228ENST00000534373 CDCA8Q53HL2 280 aa18.79■□□□□ 0.6
CAPN1-228ENST00000534373 PARD3Q8TEW0 1356 aa18.79■□□□□ 0.6
CAPN1-228ENST00000534373 USP47Q96K76 1375 aa18.79■□□□□ 0.6
CAPN1-228ENST00000534373 APBA3O96018 575 aa18.78■□□□□ 0.6
CAPN1-228ENST00000534373 CAMKK2Q96RR4 588 aa18.78■□□□□ 0.6
CAPN1-228ENST00000534373 PCGF6Q9BYE7 350 aa18.77■□□□□ 0.6
CAPN1-228ENST00000534373 CCDC7Q96M83 1385 aa18.77■□□□□ 0.6
CAPN1-228ENST00000534373 EZH2Q15910 746 aaKnown RBP18.76■□□□□ 0.59
CAPN1-228ENST00000534373 TNS1Q9HBL0 1735 aaKnown RBP18.76■□□□□ 0.59
CAPN1-228ENST00000534373 OVOS2A0A0G2JMS6 1433 aa18.75■□□□□ 0.59
CAPN1-228ENST00000534373 OVOS2A0A0J9YW53 1432 aa18.75■□□□□ 0.59
CAPN1-228ENST00000534373 OVOS2Q6IE36 1432 aa18.75■□□□□ 0.59
CAPN1-228ENST00000534373 ANKRD36BQ8N2N9 1353 aa18.75■□□□□ 0.59
CAPN1-228ENST00000534373 EXOC5O00471 708 aa18.74■□□□□ 0.59
CAPN1-228ENST00000534373 BCL9O00512 1426 aa18.74■□□□□ 0.59
CAPN1-228ENST00000534373 ERBB3P21860 1342 aa18.74■□□□□ 0.59
CAPN1-228ENST00000534373 RGPD5Q99666 1765 aa18.73■□□□□ 0.59
CAPN1-228ENST00000534373 COG3Q96JB2 828 aa18.73■□□□□ 0.59
CAPN1-228ENST00000534373 IP6K1Q92551 441 aa18.72■□□□□ 0.59
CAPN1-228ENST00000534373 LRRC37A3O60309 1634 aa18.71■□□□□ 0.58
CAPN1-228ENST00000534373 PLSCR1O15162 318 aa18.7■□□□□ 0.58
CAPN1-228ENST00000534373 MARCH10Q8NA82 808 aaPredicted RBP18.7■□□□□ 0.58
CAPN1-228ENST00000534373 ANKRD24Q8TF21 1146 aa18.7■□□□□ 0.58
CAPN1-228ENST00000534373 BCL11BQ9C0K0 894 aaPredicted RBP18.7■□□□□ 0.58
CAPN1-228ENST00000534373 NLRP2Q9NX02 1062 aa18.7■□□□□ 0.58
CAPN1-228ENST00000534373 PEAK1Q9H792 1746 aa18.69■□□□□ 0.58
CAPN1-228ENST00000534373 PSDA5PKW4 1024 aaPredicted RBP18.69■□□□□ 0.58
CAPN1-228ENST00000534373 NBPF14Q5TI25 921 aa18.68■□□□□ 0.58
CAPN1-228ENST00000534373 LTN1O94822 1766 aa18.68■□□□□ 0.58
CAPN1-228ENST00000534373 WNK3Q9BYP7 1800 aa18.67■□□□□ 0.58
CAPN1-228ENST00000534373 FYB1O15117 783 aa18.67■□□□□ 0.58
CAPN1-228ENST00000534373 IL2RBP14784 551 aa18.67■□□□□ 0.58
CAPN1-228ENST00000534373 R3HDM1Q15032 1099 aaKnown RBP18.67■□□□□ 0.58
CAPN1-228ENST00000534373 MAP3K19Q56UN5 1328 aa18.65■□□□□ 0.58
CAPN1-228ENST00000534373 HOXC9P31274 260 aa18.64■□□□□ 0.57
CAPN1-228ENST00000534373 AMPHP49418 695 aa18.64■□□□□ 0.57
CAPN1-228ENST00000534373 CCER1Q8TC90 406 aaPredicted RBP18.64■□□□□ 0.57
CAPN1-228ENST00000534373 TNS2Q63HR2 1409 aa18.64■□□□□ 0.57
CAPN1-228ENST00000534373 SBF2Q86WG5 1849 aa18.63■□□□□ 0.57
CAPN1-228ENST00000534373 LRP5O75197 1615 aa18.63■□□□□ 0.57
CAPN1-228ENST00000534373 RREB1Q92766 1687 aa18.63■□□□□ 0.57
CAPN1-228ENST00000534373 GGNBP2Q9H3C7 697 aa18.62■□□□□ 0.57
CAPN1-228ENST00000534373 RTL1A6NKG5 1358 aa18.61■□□□□ 0.57
CAPN1-228ENST00000534373 RGPD3A6NKT7 1758 aaPredicted RBP18.6■□□□□ 0.57
CAPN1-228ENST00000534373 RGPD4Q7Z3J3 1758 aa18.6■□□□□ 0.57
CAPN1-228ENST00000534373 KIF24Q5T7B8 1368 aa18.59■□□□□ 0.57
CAPN1-228ENST00000534373 FBLN1P23142 703 aa18.59■□□□□ 0.57
CAPN1-228ENST00000534373 EIF4G2P78344 907 aaKnown RBP eCLIP18.59■□□□□ 0.57
CAPN1-228ENST00000534373 PTF1AQ7RTS3 328 aa18.59■□□□□ 0.57
CAPN1-228ENST00000534373 LTV1Q96GA3 475 aaPredicted RBP18.59■□□□□ 0.57
CAPN1-228ENST00000534373 CARD14Q9BXL6 1004 aa18.59■□□□□ 0.57
CAPN1-228ENST00000534373 FAM208AQ9UK61 1670 aaKnown RBP18.59■□□□□ 0.57
CAPN1-228ENST00000534373 NUP188Q5SRE5 1749 aa18.57■□□□□ 0.56
CAPN1-228ENST00000534373 RRS1Q15050 365 aaKnown RBP18.57■□□□□ 0.56
CAPN1-228ENST00000534373 PROM2Q8N271 834 aa18.57■□□□□ 0.56
CAPN1-228ENST00000534373 KCNQ2O43526 872 aa18.55■□□□□ 0.56
CAPN1-228ENST00000534373 CGNL1Q0VF96 1302 aa18.54■□□□□ 0.56
CAPN1-228ENST00000534373 TXNRD1Q16881 649 aa18.54■□□□□ 0.56
CAPN1-228ENST00000534373 NSD3Q9BZ95 1437 aa18.54■□□□□ 0.56
CAPN1-228ENST00000534373 INSRP06213 1382 aa18.54■□□□□ 0.56
CAPN1-228ENST00000534373 SMG6Q86US8 1419 aaKnown RBP18.53■□□□□ 0.56
CAPN1-228ENST00000534373 ACSBG1Q96GR2 724 aa18.53■□□□□ 0.56
CAPN1-228ENST00000534373 MYOM1P52179 1685 aa18.53■□□□□ 0.56
CAPN1-228ENST00000534373 FLT4P35916 1363 aa18.53■□□□□ 0.56
CAPN1-228ENST00000534373 HSPA5P11021 654 aaKnown RBP18.52■□□□□ 0.56
CAPN1-228ENST00000534373 NBPF6Q5VWK0 638 aa18.52■□□□□ 0.56
CAPN1-228ENST00000534373 ZCRB1Q8TBF4 217 aaKnown RBP18.52■□□□□ 0.56
CAPN1-228ENST00000534373 DDX54Q8TDD1 881 aaKnown RBP18.52■□□□□ 0.56
CAPN1-228ENST00000534373 NBPF4Q96M43 638 aa18.52■□□□□ 0.56
CAPN1-228ENST00000534373 KIF20BQ96Q89 1820 aa18.51■□□□□ 0.55
CAPN1-228ENST00000534373 NHSQ6T4R5 1651 aa18.51■□□□□ 0.55
CAPN1-228ENST00000534373 HSP90AB2PQ58FF8 381 aa18.51■□□□□ 0.55
CAPN1-228ENST00000534373 SPON1Q9HCB6 807 aa18.5■□□□□ 0.55
CAPN1-228ENST00000534373 RAPGEF4Q8WZA2 1011 aa18.49■□□□□ 0.55
CAPN1-228ENST00000534373 ANO8Q9HCE9 1232 aaPredicted RBP18.49■□□□□ 0.55
CAPN1-228ENST00000534373 POLR3GLQ9BT43 218 aa18.48■□□□□ 0.55
CAPN1-228ENST00000534373 STK32BQ9NY57 414 aa18.48■□□□□ 0.55
CAPN1-228ENST00000534373 TATP17735 454 aaPredicted RBP18.47■□□□□ 0.55
CAPN1-228ENST00000534373 SLC15A2Q16348 729 aa18.47■□□□□ 0.55
CAPN1-228ENST00000534373 WASHC2AQ641Q2 1341 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms