RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 THRAP3Q9Y2W1 955 aaKnown RBP22.65■■□□□ 1.22
CHMP4A-207ENST00000533523 PROM2Q8N271 834 aa22.64■■□□□ 1.21
CHMP4A-207ENST00000533523 CHD4Q14839 1912 aa22.63■■□□□ 1.21
CHMP4A-207ENST00000533523 PTGER2P43116 358 aa22.62■■□□□ 1.21
CHMP4A-207ENST00000533523 NBPF14Q5TI25 921 aa22.62■■□□□ 1.21
CHMP4A-207ENST00000533523 OVOS2A0A0G2JMS6 1433 aa22.62■■□□□ 1.21
CHMP4A-207ENST00000533523 OVOS2A0A0J9YW53 1432 aa22.62■■□□□ 1.21
CHMP4A-207ENST00000533523 OVOS2Q6IE36 1432 aa22.62■■□□□ 1.21
CHMP4A-207ENST00000533523 NLRP6P59044 892 aa22.61■■□□□ 1.21
CHMP4A-207ENST00000533523 ZNF784Q8NCA9 323 aaPredicted RBP22.61■■□□□ 1.21
CHMP4A-207ENST00000533523 CABP1Q9NZU7 370 aa22.61■■□□□ 1.21
CHMP4A-207ENST00000533523 PPP1R1BQ9UD71 204 aaPredicted RBP22.61■■□□□ 1.21
CHMP4A-207ENST00000533523 AATKQ6ZMQ8 1374 aa22.6■■□□□ 1.21
CHMP4A-207ENST00000533523 CPSF1Q10570 1443 aaKnown RBP22.58■■□□□ 1.21
CHMP4A-207ENST00000533523 PAPPAQ13219 1627 aa22.58■■□□□ 1.21
CHMP4A-207ENST00000533523 EVC2Q86UK5 1308 aa22.57■■□□□ 1.2
CHMP4A-207ENST00000533523 ZBTB7AO95365 584 aa22.56■■□□□ 1.2
CHMP4A-207ENST00000533523 L3MBTL2Q969R5 705 aa22.56■■□□□ 1.2
CHMP4A-207ENST00000533523 MON2Q7Z3U7 1717 aa22.56■■□□□ 1.2
CHMP4A-207ENST00000533523 ROCK2O75116 1388 aaKnown RBP22.55■■□□□ 1.2
CHMP4A-207ENST00000533523 TOM1L2Q6ZVM7 507 aa22.55■■□□□ 1.2
CHMP4A-207ENST00000533523 C11orf95C9JLR9 678 aaPredicted RBP22.54■■□□□ 1.2
CHMP4A-207ENST00000533523 PLSCR1O15162 318 aa22.53■■□□□ 1.2
CHMP4A-207ENST00000533523 SOX12O15370 315 aa22.53■■□□□ 1.2
CHMP4A-207ENST00000533523 DDB1Q16531 1140 aa22.53■■□□□ 1.2
CHMP4A-207ENST00000533523 SGIP1Q9BQI5 828 aa22.53■■□□□ 1.2
CHMP4A-207ENST00000533523 MARCH10Q8NA82 808 aaPredicted RBP22.52■■□□□ 1.2
CHMP4A-207ENST00000533523 WDR17Q8IZU2 1322 aa22.52■■□□□ 1.2
CHMP4A-207ENST00000533523 NFAT5O94916 1531 aa22.52■■□□□ 1.19
CHMP4A-207ENST00000533523 NHSQ6T4R5 1651 aa22.5■■□□□ 1.19
CHMP4A-207ENST00000533523 ATF5Q9Y2D1 282 aaPredicted RBP22.5■■□□□ 1.19
CHMP4A-207ENST00000533523 TTC21BQ7Z4L5 1316 aa22.5■■□□□ 1.19
CHMP4A-207ENST00000533523 LTN1O94822 1766 aa22.5■■□□□ 1.19
CHMP4A-207ENST00000533523 KAT6BQ8WYB5 2073 aa22.5■■□□□ 1.19
CHMP4A-207ENST00000533523 BCL9O00512 1426 aa22.49■■□□□ 1.19
CHMP4A-207ENST00000533523 AXIN2Q9Y2T1 843 aa22.49■■□□□ 1.19
CHMP4A-207ENST00000533523 CSB-PGBD3P0DP91 1061 aa22.48■■□□□ 1.19
CHMP4A-207ENST00000533523 SIN3AQ96ST3 1273 aa22.48■■□□□ 1.19
CHMP4A-207ENST00000533523 FHDC1Q9C0D6 1143 aaPredicted RBP22.48■■□□□ 1.19
CHMP4A-207ENST00000533523 COL24A1Q17RW2 1714 aa22.48■■□□□ 1.19
CHMP4A-207ENST00000533523 ABCC6O95255 1503 aa22.47■■□□□ 1.19
CHMP4A-207ENST00000533523 USP54Q70EL1 1684 aa22.47■■□□□ 1.19
CHMP4A-207ENST00000533523 BCL11BQ9C0K0 894 aaPredicted RBP22.47■■□□□ 1.19
CHMP4A-207ENST00000533523 TTC21AQ8NDW8 1320 aa22.47■■□□□ 1.19
CHMP4A-207ENST00000533523 KTN1Q86UP2 1357 aaKnown RBP22.47■■□□□ 1.19
CHMP4A-207ENST00000533523 TUBGCP6Q96RT7 1819 aa22.46■■□□□ 1.19
CHMP4A-207ENST00000533523 NEUROD1Q13562 356 aa22.46■■□□□ 1.19
CHMP4A-207ENST00000533523 KCNH5Q8NCM2 988 aa22.46■■□□□ 1.19
CHMP4A-207ENST00000533523 SYT17Q9BSW7 474 aa22.46■■□□□ 1.19
CHMP4A-207ENST00000533523 SHANK3Q9BYB0 1731 aa22.45■■□□□ 1.19
CHMP4A-207ENST00000533523 ARHGEF25Q86VW2 580 aa22.45■■□□□ 1.18
CHMP4A-207ENST00000533523 ZNF692Q9BU19 519 aaPredicted RBP22.45■■□□□ 1.18
CHMP4A-207ENST00000533523 CDCA7Q9BWT1 371 aaPredicted RBP22.44■■□□□ 1.18
CHMP4A-207ENST00000533523 BTAF1O14981 1849 aa22.43■■□□□ 1.18
CHMP4A-207ENST00000533523 TNS2Q63HR2 1409 aa22.43■■□□□ 1.18
CHMP4A-207ENST00000533523 SENP3-EIF4A1A0A087X0R7 540 aa22.42■■□□□ 1.18
CHMP4A-207ENST00000533523 TXNRD1Q16881 649 aa22.42■■□□□ 1.18
CHMP4A-207ENST00000533523 CARD10Q9BWT7 1032 aa22.42■■□□□ 1.18
CHMP4A-207ENST00000533523 C1QTNF8P60827 252 aa22.41■■□□□ 1.18
CHMP4A-207ENST00000533523 CCDC7Q96M83 1385 aa22.4■■□□□ 1.18
CHMP4A-207ENST00000533523 SLC15A2Q16348 729 aa22.4■■□□□ 1.18
CHMP4A-207ENST00000533523 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.39■■□□□ 1.17
CHMP4A-207ENST00000533523 QSER1Q2KHR3 1735 aa22.39■■□□□ 1.17
CHMP4A-207ENST00000533523 DCAF8L1A6NGE4 600 aa22.37■■□□□ 1.17
CHMP4A-207ENST00000533523 SBNO2Q9Y2G9 1366 aa22.37■■□□□ 1.17
CHMP4A-207ENST00000533523 EXOC5O00471 708 aa22.36■■□□□ 1.17
CHMP4A-207ENST00000533523 MAP3K5Q99683 1374 aa22.36■■□□□ 1.17
CHMP4A-207ENST00000533523 CD163L1Q9NR16 1453 aa22.35■■□□□ 1.17
CHMP4A-207ENST00000533523 ZNF827Q17R98 1081 aa22.35■■□□□ 1.17
CHMP4A-207ENST00000533523 NME9Q86XW9 330 aa22.34■■□□□ 1.17
CHMP4A-207ENST00000533523 MTFR1LQ9H019 292 aa22.34■■□□□ 1.17
CHMP4A-207ENST00000533523 ERBB3P21860 1342 aa22.33■■□□□ 1.17
CHMP4A-207ENST00000533523 FAM208AQ9UK61 1670 aaKnown RBP22.33■■□□□ 1.17
CHMP4A-207ENST00000533523 CARD11Q9BXL7 1154 aa22.33■■□□□ 1.17
CHMP4A-207ENST00000533523 STK32BQ9NY57 414 aa22.33■■□□□ 1.17
CHMP4A-207ENST00000533523 USP31Q70CQ4 1352 aa22.33■■□□□ 1.17
CHMP4A-207ENST00000533523 TMC1Q8TDI8 760 aa22.32■■□□□ 1.16
CHMP4A-207ENST00000533523 NLRP2Q9NX02 1062 aa22.32■■□□□ 1.16
CHMP4A-207ENST00000533523 IFFO2Q5TF58 517 aa22.31■■□□□ 1.16
CHMP4A-207ENST00000533523 EDC4Q6P2E9 1401 aaKnown RBP22.31■■□□□ 1.16
CHMP4A-207ENST00000533523 HDGFL2Q7Z4V5 671 aaPredicted RBP22.3■■□□□ 1.16
CHMP4A-207ENST00000533523 ACSBG1Q96GR2 724 aa22.3■■□□□ 1.16
CHMP4A-207ENST00000533523 LRRC4BQ9NT99 713 aa22.29■■□□□ 1.16
CHMP4A-207ENST00000533523 ARXQ96QS3 562 aa22.28■■□□□ 1.16
CHMP4A-207ENST00000533523 A0A1W2PP64 1363 aa22.27■■□□□ 1.16
CHMP4A-207ENST00000533523 ANKRD24Q8TF21 1146 aa22.27■■□□□ 1.16
CHMP4A-207ENST00000533523 IL2RBP14784 551 aa22.26■■□□□ 1.15
CHMP4A-207ENST00000533523 RGPD2P0DJD1 1756 aa22.25■■□□□ 1.15
CHMP4A-207ENST00000533523 SLC12A5Q9H2X9 1139 aa22.25■■□□□ 1.15
CHMP4A-207ENST00000533523 TONSLQ96HA7 1378 aa22.25■■□□□ 1.15
CHMP4A-207ENST00000533523 DOT1LQ8TEK3 1739 aa22.24■■□□□ 1.15
CHMP4A-207ENST00000533523 LY75O60449 1722 aa22.23■■□□□ 1.15
CHMP4A-207ENST00000533523 TERF2IPQ9NYB0 399 aa22.23■■□□□ 1.15
CHMP4A-207ENST00000533523 NLGN2Q8NFZ4 835 aa22.22■■□□□ 1.15
CHMP4A-207ENST00000533523 AKT1S1Q96B36 256 aa22.2■■□□□ 1.14
CHMP4A-207ENST00000533523 PNPLA7Q6ZV29 1317 aa22.18■■□□□ 1.14
CHMP4A-207ENST00000533523 LTV1Q96GA3 475 aaPredicted RBP22.18■■□□□ 1.14
CHMP4A-207ENST00000533523 YBX3P16989 372 aaKnown RBP eCLIP22.17■■□□□ 1.14
CHMP4A-207ENST00000533523 GIGYF1O75420 1035 aaPredicted RBP22.16■■□□□ 1.14
CHMP4A-207ENST00000533523 KCNQ4P56696 695 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms