RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 ARHGEF25Q86VW2 580 aa21.23■□□□□ 0.99
TRIM3-213ENST00000533309 CCDC146Q8IYE0 955 aa21.23■□□□□ 0.99
TRIM3-213ENST00000533309 CERKQ8TCT0 537 aa21.23■□□□□ 0.99
TRIM3-213ENST00000533309 RGPD5Q99666 1765 aa21.23■□□□□ 0.99
TRIM3-213ENST00000533309 COL18A1P39060 1754 aa21.23■□□□□ 0.99
TRIM3-213ENST00000533309 CABLES1Q8TDN4 633 aa21.22■□□□□ 0.99
TRIM3-213ENST00000533309 CENPBP07199 599 aaPredicted RBP21.22■□□□□ 0.99
TRIM3-213ENST00000533309 COL22A1Q8NFW1 1626 aaPredicted RBP21.21■□□□□ 0.99
TRIM3-213ENST00000533309 UBAP1LF5GYI3 381 aa21.21■□□□□ 0.99
TRIM3-213ENST00000533309 IP6K1Q92551 441 aa21.21■□□□□ 0.99
TRIM3-213ENST00000533309 RGPD2P0DJD1 1756 aa21.19■□□□□ 0.98
TRIM3-213ENST00000533309 PIP4K2BP78356 416 aa21.18■□□□□ 0.98
TRIM3-213ENST00000533309 ABCC6O95255 1503 aa21.18■□□□□ 0.98
TRIM3-213ENST00000533309 CPDO75976 1380 aa21.17■□□□□ 0.98
TRIM3-213ENST00000533309 ZC3H6P61129 1189 aaKnown RBP21.17■□□□□ 0.98
TRIM3-213ENST00000533309 LRRC59Q96AG4 307 aaKnown RBP21.17■□□□□ 0.98
TRIM3-213ENST00000533309 RUNDC1Q96C34 613 aa21.17■□□□□ 0.98
TRIM3-213ENST00000533309 PLEKHF1Q96S99 279 aa21.17■□□□□ 0.98
TRIM3-213ENST00000533309 RSPH6AQ9H0K4 717 aa21.17■□□□□ 0.98
TRIM3-213ENST00000533309 APAF1O14727 1248 aa21.16■□□□□ 0.98
TRIM3-213ENST00000533309 ZBTB7CA1YPR0 619 aa21.15■□□□□ 0.98
TRIM3-213ENST00000533309 FCHSD2O94868 740 aa21.15■□□□□ 0.98
TRIM3-213ENST00000533309 HMOX1P09601 288 aa21.15■□□□□ 0.98
TRIM3-213ENST00000533309 KIAA0232Q92628 1395 aa21.14■□□□□ 0.98
TRIM3-213ENST00000533309 LMO7Q8WWI1 1683 aa21.14■□□□□ 0.97
TRIM3-213ENST00000533309 CAMTA1Q9Y6Y1 1673 aa21.14■□□□□ 0.97
TRIM3-213ENST00000533309 IGSF1Q8N6C5 1336 aa21.13■□□□□ 0.97
TRIM3-213ENST00000533309 AXIN2Q9Y2T1 843 aa21.13■□□□□ 0.97
TRIM3-213ENST00000533309 SALL2Q9Y467 1007 aaPredicted RBP21.13■□□□□ 0.97
TRIM3-213ENST00000533309 KDRP35968 1356 aa21.13■□□□□ 0.97
TRIM3-213ENST00000533309 PRKAR2BP31323 418 aa21.12■□□□□ 0.97
TRIM3-213ENST00000533309 AEBP1Q8IUX7 1158 aa21.12■□□□□ 0.97
TRIM3-213ENST00000533309 TCP11L2Q8N4U5 519 aa21.12■□□□□ 0.97
TRIM3-213ENST00000533309 EYA1Q99502 592 aa21.12■□□□□ 0.97
TRIM3-213ENST00000533309 LTV1Q96GA3 475 aaPredicted RBP21.11■□□□□ 0.97
TRIM3-213ENST00000533309 ZNF521Q96K83 1311 aa21.1■□□□□ 0.97
TRIM3-213ENST00000533309 FAM208AQ9UK61 1670 aaKnown RBP21.1■□□□□ 0.97
TRIM3-213ENST00000533309 DLG5Q8TDM6 1919 aa21.1■□□□□ 0.97
TRIM3-213ENST00000533309 SULT6B1Q6IMI4 303 aa21.1■□□□□ 0.97
TRIM3-213ENST00000533309 PNNQ9H307 717 aaKnown RBP21.1■□□□□ 0.97
TRIM3-213ENST00000533309 NCAPD2Q15021 1401 aa21.09■□□□□ 0.97
TRIM3-213ENST00000533309 CHRNA2Q15822 529 aa21.08■□□□□ 0.97
TRIM3-213ENST00000533309 ERBB3P21860 1342 aa21.08■□□□□ 0.97
TRIM3-213ENST00000533309 MAPK8IP3Q9UPT6 1336 aa21.08■□□□□ 0.97
TRIM3-213ENST00000533309 NGEFQ8N5V2 710 aa21.07■□□□□ 0.96
TRIM3-213ENST00000533309 PHACTR3Q96KR7 559 aa21.07■□□□□ 0.96
TRIM3-213ENST00000533309 RRP7AQ9Y3A4 280 aaKnown RBP21.07■□□□□ 0.96
TRIM3-213ENST00000533309 HAP1P54257 671 aaPredicted RBP21.07■□□□□ 0.96
TRIM3-213ENST00000533309 ANKRD24Q8TF21 1146 aa21.07■□□□□ 0.96
TRIM3-213ENST00000533309 PHF23Q9BUL5 403 aaPredicted RBP21.07■□□□□ 0.96
TRIM3-213ENST00000533309 NBPF6Q5VWK0 638 aa21.06■□□□□ 0.96
TRIM3-213ENST00000533309 NBPF4Q96M43 638 aa21.06■□□□□ 0.96
TRIM3-213ENST00000533309 PRDM11Q9NQV5 511 aa21.06■□□□□ 0.96
TRIM3-213ENST00000533309 TMPOP42166 694 aaKnown RBP21.05■□□□□ 0.96
TRIM3-213ENST00000533309 NCBP3Q53F19 620 aaKnown RBP21.05■□□□□ 0.96
TRIM3-213ENST00000533309 COL14A1Q05707 1796 aaKnown RBP21.04■□□□□ 0.96
TRIM3-213ENST00000533309 NEUROD2Q15784 382 aa21.03■□□□□ 0.96
TRIM3-213ENST00000533309 CCDC27Q2M243 656 aa21.03■□□□□ 0.96
TRIM3-213ENST00000533309 USHBP1Q8N6Y0 703 aa21.03■□□□□ 0.96
TRIM3-213ENST00000533309 PDE3BQ13370 1112 aa21.02■□□□□ 0.96
TRIM3-213ENST00000533309 WWC1Q8IX03 1113 aa21.02■□□□□ 0.96
TRIM3-213ENST00000533309 COL5A2P05997 1499 aaPredicted RBP21.02■□□□□ 0.96
TRIM3-213ENST00000533309 NEFMP07197 916 aa21■□□□□ 0.95
TRIM3-213ENST00000533309 NFE2L2Q16236 605 aa21■□□□□ 0.95
TRIM3-213ENST00000533309 CDCA7LQ96GN5 454 aa21■□□□□ 0.95
TRIM3-213ENST00000533309 PLCH1Q4KWH8 1693 aa21■□□□□ 0.95
TRIM3-213ENST00000533309 FAM83GA6ND36 823 aa21■□□□□ 0.95
TRIM3-213ENST00000533309 TRIM35Q9UPQ4 493 aa21■□□□□ 0.95
TRIM3-213ENST00000533309 JCADQ9P266 1359 aa20.98■□□□□ 0.95
TRIM3-213ENST00000533309 RIPK4P57078 832 aa20.98■□□□□ 0.95
TRIM3-213ENST00000533309 GOLGA2Q08379 1002 aa20.96■□□□□ 0.95
TRIM3-213ENST00000533309 WDR17Q8IZU2 1322 aa20.96■□□□□ 0.95
TRIM3-213ENST00000533309 SPINK5Q9NQ38 1064 aaPredicted RBP20.96■□□□□ 0.95
TRIM3-213ENST00000533309 NRAPQ86VF7 1730 aa20.95■□□□□ 0.94
TRIM3-213ENST00000533309 NLRP2Q9NX02 1062 aa20.95■□□□□ 0.94
TRIM3-213ENST00000533309 MTHFSDQ2M296 383 aaKnown RBP20.94■□□□□ 0.94
TRIM3-213ENST00000533309 WDR63Q8IWG1 891 aa20.94■□□□□ 0.94
TRIM3-213ENST00000533309 CSB-PGBD3P0DP91 1061 aa20.93■□□□□ 0.94
TRIM3-213ENST00000533309 HSPA1LP34931 641 aa20.93■□□□□ 0.94
TRIM3-213ENST00000533309 SLFN5Q08AF3 891 aa20.93■□□□□ 0.94
TRIM3-213ENST00000533309 TRMT2AQ8IZ69 625 aaKnown RBP20.93■□□□□ 0.94
TRIM3-213ENST00000533309 NWD2Q9ULI1 1742 aa20.92■□□□□ 0.94
TRIM3-213ENST00000533309 MEGF6O75095 1541 aa20.92■□□□□ 0.94
TRIM3-213ENST00000533309 DUSP27Q5VZP5 1158 aa20.92■□□□□ 0.94
TRIM3-213ENST00000533309 ADAMTS2O95450 1211 aa20.91■□□□□ 0.94
TRIM3-213ENST00000533309 BTG4Q9NY30 223 aa20.91■□□□□ 0.94
TRIM3-213ENST00000533309 VIRMAQ69YN4 1812 aaKnown RBP20.91■□□□□ 0.94
TRIM3-213ENST00000533309 PKD1L3Q7Z443 1732 aa20.91■□□□□ 0.94
TRIM3-213ENST00000533309 NUTM2BA6NNL0 878 aaPredicted RBP20.9■□□□□ 0.94
TRIM3-213ENST00000533309 NUTM2EB1AL46 878 aaPredicted RBP20.9■□□□□ 0.94
TRIM3-213ENST00000533309 NUTM2AQ8IVF1 878 aaPredicted RBP20.9■□□□□ 0.94
TRIM3-213ENST00000533309 GAS2L2Q8NHY3 880 aa20.9■□□□□ 0.94
TRIM3-213ENST00000533309 PARP4Q9UKK3 1724 aaKnown RBP20.9■□□□□ 0.94
TRIM3-213ENST00000533309 LRRC37A3O60309 1634 aa20.9■□□□□ 0.94
TRIM3-213ENST00000533309 LRP6O75581 1613 aa20.9■□□□□ 0.94
TRIM3-213ENST00000533309 E9PSI1 815 aa20.89■□□□□ 0.94
TRIM3-213ENST00000533309 LMOD3Q0VAK6 560 aa20.89■□□□□ 0.93
TRIM3-213ENST00000533309 LARP1Q6PKG0 1096 aaKnown RBP20.89■□□□□ 0.93
TRIM3-213ENST00000533309 STRN4Q9NRL3 753 aa20.89■□□□□ 0.93
TRIM3-213ENST00000533309 PLEKHG2Q9H7P9 1386 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms