RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ZFP42Q96MM3 310 aa8.68□□□□□ -1.02
CD44-235ENST00000532339 ZFAND3Q9H8U3 227 aa8.68□□□□□ -1.02
CD44-235ENST00000532339 EMILIN1Q9Y6C2 1016 aa8.68□□□□□ -1.02
CD44-235ENST00000532339 ADAM32Q8TC27 787 aa8.67□□□□□ -1.02
CD44-235ENST00000532339 PURBQ96QR8 312 aaKnown RBP8.66□□□□□ -1.02
CD44-235ENST00000532339 KCTD15Q96SI1 283 aaPredicted RBP8.66□□□□□ -1.02
CD44-235ENST00000532339 OCSTAMPQ9BR26 566 aa8.66□□□□□ -1.02
CD44-235ENST00000532339 TRIM34Q9BYJ4 488 aa8.66□□□□□ -1.02
CD44-235ENST00000532339 UPP2O95045 317 aa8.65□□□□□ -1.02
CD44-235ENST00000532339 BANK1Q8NDB2 785 aa8.65□□□□□ -1.02
CD44-235ENST00000532339 PGPEP1Q9NXJ5 209 aa8.65□□□□□ -1.02
CD44-235ENST00000532339 WFS1O76024 890 aa8.64□□□□□ -1.03
CD44-235ENST00000532339 DHX9Q08211 1270 aaKnown RBP8.64□□□□□ -1.03
CD44-235ENST00000532339 NBPF20Q3BBV1 942 aa8.64□□□□□ -1.03
CD44-235ENST00000532339 TERTO14746 1132 aaKnown RBP8.63□□□□□ -1.03
CD44-235ENST00000532339 PPP1R26Q5T8A7 1209 aaPredicted RBP8.63□□□□□ -1.03
CD44-235ENST00000532339 MEIOBQ8N635 442 aa8.63□□□□□ -1.03
CD44-235ENST00000532339 NFX1Q12986 1120 aaKnown RBP8.62□□□□□ -1.03
CD44-235ENST00000532339 LCE2AQ5TA79 106 aaPredicted RBP8.62□□□□□ -1.03
CD44-235ENST00000532339 DZIP3Q86Y13 1208 aaKnown RBP8.62□□□□□ -1.03
CD44-235ENST00000532339 LINC00528Q8N1L1 170 aa8.62□□□□□ -1.03
CD44-235ENST00000532339 GJD4Q96KN9 370 aaPredicted RBP8.62□□□□□ -1.03
CD44-235ENST00000532339 APBB1O00213 710 aa8.61□□□□□ -1.03
CD44-235ENST00000532339 SOCS7O14512 581 aa8.61□□□□□ -1.03
CD44-235ENST00000532339 BMP2P12643 396 aa8.61□□□□□ -1.03
CD44-235ENST00000532339 INTS6LQ5JSJ4 861 aaKnown RBP8.61□□□□□ -1.03
CD44-235ENST00000532339 C6orf118Q5T5N4 469 aa8.61□□□□□ -1.03
CD44-235ENST00000532339 ZBBXA8MT70 800 aa8.6□□□□□ -1.03
CD44-235ENST00000532339 TSEN34Q9BSV6 310 aaKnown RBP8.6□□□□□ -1.03
CD44-235ENST00000532339 NXF1Q9UBU9 619 aaKnown RBP8.6□□□□□ -1.03
CD44-235ENST00000532339 SLC16A10Q8TF71 515 aa8.59□□□□□ -1.03
CD44-235ENST00000532339 PRKCSHP14314 528 aaPredicted RBP8.58□□□□□ -1.04
CD44-235ENST00000532339 Q6ZVU0 165 aa8.58□□□□□ -1.04
CD44-235ENST00000532339 NPAS3Q8IXF0 933 aa8.58□□□□□ -1.04
CD44-235ENST00000532339 MAN1A2O60476 641 aa8.57□□□□□ -1.04
CD44-235ENST00000532339 MTMR14Q8NCE2 650 aa8.57□□□□□ -1.04
CD44-235ENST00000532339 NDUFB9Q9Y6M9 179 aa8.57□□□□□ -1.04
CD44-235ENST00000532339 ESPNB1AK53 854 aa8.56□□□□□ -1.04
CD44-235ENST00000532339 FBXO45P0C2W1 286 aa8.56□□□□□ -1.04
CD44-235ENST00000532339 RAB15P59190 212 aa8.56□□□□□ -1.04
CD44-235ENST00000532339 CBLBQ13191 982 aa8.56□□□□□ -1.04
CD44-235ENST00000532339 SEPT12Q8IYM1 358 aa8.56□□□□□ -1.04
CD44-235ENST00000532339 TRIM52Q96A61 297 aa8.56□□□□□ -1.04
CD44-235ENST00000532339 SOBPA7XYQ1 873 aa8.55□□□□□ -1.04
CD44-235ENST00000532339 ZNF592Q92610 1267 aa8.55□□□□□ -1.04
CD44-235ENST00000532339 SNRKQ9NRH2 765 aa8.55□□□□□ -1.04
CD44-235ENST00000532339 PCDHB9Q9Y5E1 797 aa8.55□□□□□ -1.04
CD44-235ENST00000532339 SOS2Q07890 1332 aaPredicted RBP8.54□□□□□ -1.04
CD44-235ENST00000532339 MCCD1P59942 119 aaPredicted RBP8.54□□□□□ -1.04
CD44-235ENST00000532339 NR1H3Q13133 447 aa8.54□□□□□ -1.04
CD44-235ENST00000532339 TMPRSS4Q9NRS4 437 aa8.54□□□□□ -1.04
CD44-235ENST00000532339 ZNF330Q9Y3S2 320 aaPredicted RBP8.54□□□□□ -1.04
CD44-235ENST00000532339 ERVH48-1M5A8F1 160 aa8.53□□□□□ -1.04
CD44-235ENST00000532339 WIPF1O43516 503 aa8.53□□□□□ -1.04
CD44-235ENST00000532339 ZNF784Q8NCA9 323 aaPredicted RBP8.53□□□□□ -1.04
CD44-235ENST00000532339 IRF7Q92985 503 aa8.53□□□□□ -1.04
CD44-235ENST00000532339 TTLL8A6PVC2 850 aa8.52□□□□□ -1.05
CD44-235ENST00000532339 H3BM21 787 aa8.52□□□□□ -1.05
CD44-235ENST00000532339 SPINT1O43278 529 aa8.52□□□□□ -1.05
CD44-235ENST00000532339 CCDC125Q86Z20 511 aa8.52□□□□□ -1.05
CD44-235ENST00000532339 PRM3Q9NNZ6 103 aa8.52□□□□□ -1.05
CD44-235ENST00000532339 VEGFBP49765 207 aa8.51□□□□□ -1.05
CD44-235ENST00000532339 LCE2CQ5TA81 110 aa8.51□□□□□ -1.05
CD44-235ENST00000532339 AGBL1Q96MI9 1066 aa8.51□□□□□ -1.05
CD44-235ENST00000532339 DNMT3LQ9UJW3 386 aa8.51□□□□□ -1.05
CD44-235ENST00000532339 GPR37L1O60883 481 aa8.5□□□□□ -1.05
CD44-235ENST00000532339 GIGYF1O75420 1035 aaPredicted RBP8.5□□□□□ -1.05
CD44-235ENST00000532339 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.5□□□□□ -1.05
CD44-235ENST00000532339 RNF20Q5VTR2 975 aa8.5□□□□□ -1.05
CD44-235ENST00000532339 LILRA1O75019 489 aa8.49□□□□□ -1.05
CD44-235ENST00000532339 ADH1AP07327 375 aa8.49□□□□□ -1.05
CD44-235ENST00000532339 INSM1Q01101 510 aaPredicted RBP8.49□□□□□ -1.05
CD44-235ENST00000532339 RELBQ01201 579 aa8.49□□□□□ -1.05
CD44-235ENST00000532339 ADD1P35611 737 aaKnown RBP8.47□□□□□ -1.05
CD44-235ENST00000532339 ZNF395Q9H8N7 513 aaPredicted RBP8.47□□□□□ -1.05
CD44-235ENST00000532339 CYLDQ9NQC7 956 aa8.47□□□□□ -1.05
CD44-235ENST00000532339 FIGNL2A6NMB9 653 aa8.46□□□□□ -1.06
CD44-235ENST00000532339 PTGIRP43119 386 aa8.46□□□□□ -1.06
CD44-235ENST00000532339 INSM2Q96T92 566 aaPredicted RBP8.46□□□□□ -1.06
CD44-235ENST00000532339 POLMQ9NP87 494 aaPredicted RBP8.46□□□□□ -1.06
CD44-235ENST00000532339 TBC1D2BQ9UPU7 963 aa8.46□□□□□ -1.06
CD44-235ENST00000532339 PPFIA3O75145 1194 aa8.45□□□□□ -1.06
CD44-235ENST00000532339 GMPRP36959 345 aa8.45□□□□□ -1.06
CD44-235ENST00000532339 CTSOP43234 321 aaPredicted RBP8.45□□□□□ -1.06
CD44-235ENST00000532339 ERBB4Q15303 1308 aa8.45□□□□□ -1.06
CD44-235ENST00000532339 VSIG8P0DPA2 414 aa8.44□□□□□ -1.06
CD44-235ENST00000532339 PTSQ03393 145 aa8.44□□□□□ -1.06
CD44-235ENST00000532339 ATP5J2-PTCD1G3V325 749 aa8.43□□□□□ -1.06
CD44-235ENST00000532339 ERVK-9P63128 1117 aa8.43□□□□□ -1.06
CD44-235ENST00000532339 CC2D2BQ6DHV5 1058 aa8.43□□□□□ -1.06
CD44-235ENST00000532339 KDF1Q8NAX2 398 aaPredicted RBP8.43□□□□□ -1.06
CD44-235ENST00000532339 RNF217Q8TC41 542 aa8.43□□□□□ -1.06
CD44-235ENST00000532339 EIF4G2P78344 907 aaKnown RBP eCLIP8.42□□□□□ -1.06
CD44-235ENST00000532339 STK17AQ9UEE5 414 aa8.42□□□□□ -1.06
CD44-235ENST00000532339 PCDHB11Q9Y5F2 797 aa8.42□□□□□ -1.06
CD44-235ENST00000532339 ESF1Q9H501 851 aaKnown RBP8.41□□□□□ -1.06
CD44-235ENST00000532339 CEP126Q9P2H0 1117 aa8.41□□□□□ -1.06
CD44-235ENST00000532339 IRF5Q13568 498 aa8.4□□□□□ -1.06
CD44-235ENST00000532339 MCM6Q14566 821 aa8.4□□□□□ -1.06
CD44-235ENST00000532339 FOXD4L5Q5VV16 416 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms