RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ARHGEF25Q86VW2 580 aa18.68■□□□□ 0.58
VPS28-211ENST00000530790 NME9Q86XW9 330 aa18.68■□□□□ 0.58
VPS28-211ENST00000530790 FAM182BQ5T319 152 aa18.67■□□□□ 0.58
VPS28-211ENST00000530790 CCER1Q8TC90 406 aaPredicted RBP18.67■□□□□ 0.58
VPS28-211ENST00000530790 RGPD1P0DJD0 1748 aa18.66■□□□□ 0.58
VPS28-211ENST00000530790 ZRANB1Q9UGI0 708 aa18.66■□□□□ 0.58
VPS28-211ENST00000530790 WDR17Q8IZU2 1322 aa18.66■□□□□ 0.58
VPS28-211ENST00000530790 PARP4Q9UKK3 1724 aaKnown RBP18.66■□□□□ 0.58
VPS28-211ENST00000530790 TOM1L2Q6ZVM7 507 aa18.65■□□□□ 0.58
VPS28-211ENST00000530790 DEFB132Q7Z7B7 95 aa18.65■□□□□ 0.58
VPS28-211ENST00000530790 ANKRD36BQ8N2N9 1353 aa18.65■□□□□ 0.58
VPS28-211ENST00000530790 OVOS2A0A0J9YW53 1432 aa18.65■□□□□ 0.58
VPS28-211ENST00000530790 OVOS2Q6IE36 1432 aa18.65■□□□□ 0.58
VPS28-211ENST00000530790 BAG6P46379 1132 aa18.64■□□□□ 0.57
VPS28-211ENST00000530790 PDE3BQ13370 1112 aa18.64■□□□□ 0.57
VPS28-211ENST00000530790 AXIN2Q9Y2T1 843 aa18.64■□□□□ 0.57
VPS28-211ENST00000530790 CSB-PGBD3P0DP91 1061 aa18.63■□□□□ 0.57
VPS28-211ENST00000530790 CDCA8Q53HL2 280 aa18.63■□□□□ 0.57
VPS28-211ENST00000530790 LRRC37A3O60309 1634 aa18.63■□□□□ 0.57
VPS28-211ENST00000530790 FAM196AQ6ZSG2 479 aa18.62■□□□□ 0.57
VPS28-211ENST00000530790 TNS1Q9HBL0 1735 aaKnown RBP18.62■□□□□ 0.57
VPS28-211ENST00000530790 WNK3Q9BYP7 1800 aa18.62■□□□□ 0.57
VPS28-211ENST00000530790 LTN1O94822 1766 aa18.61■□□□□ 0.57
VPS28-211ENST00000530790 DISP2A7MBM2 1401 aa18.6■□□□□ 0.57
VPS28-211ENST00000530790 RGPD5Q99666 1765 aa18.6■□□□□ 0.57
VPS28-211ENST00000530790 COG3Q96JB2 828 aa18.58■□□□□ 0.56
VPS28-211ENST00000530790 OVOS2A0A0G2JMS6 1433 aa18.57■□□□□ 0.56
VPS28-211ENST00000530790 CCDC7Q96M83 1385 aa18.57■□□□□ 0.56
VPS28-211ENST00000530790 ERBB3P21860 1342 aa18.57■□□□□ 0.56
VPS28-211ENST00000530790 TRIM37O94972 964 aa18.57■□□□□ 0.56
VPS28-211ENST00000530790 CDCA7Q9BWT1 371 aaPredicted RBP18.57■□□□□ 0.56
VPS28-211ENST00000530790 CARD10Q9BWT7 1032 aa18.57■□□□□ 0.56
VPS28-211ENST00000530790 MYOM1P52179 1685 aa18.57■□□□□ 0.56
VPS28-211ENST00000530790 DDB1Q16531 1140 aa18.56■□□□□ 0.56
VPS28-211ENST00000530790 C11orf95C9JLR9 678 aaPredicted RBP18.55■□□□□ 0.56
VPS28-211ENST00000530790 EN1Q05925 392 aaPredicted RBP18.54■□□□□ 0.56
VPS28-211ENST00000530790 PEAK1Q9H792 1746 aa18.53■□□□□ 0.56
VPS28-211ENST00000530790 TNS2Q63HR2 1409 aa18.52■□□□□ 0.56
VPS28-211ENST00000530790 ANKRD24Q8TF21 1146 aa18.52■□□□□ 0.56
VPS28-211ENST00000530790 NLRP2Q9NX02 1062 aa18.52■□□□□ 0.56
VPS28-211ENST00000530790 PARD3Q8TEW0 1356 aa18.52■□□□□ 0.55
VPS28-211ENST00000530790 KIF20BQ96Q89 1820 aa18.51■□□□□ 0.55
VPS28-211ENST00000530790 FAM208AQ9UK61 1670 aaKnown RBP18.51■□□□□ 0.55
VPS28-211ENST00000530790 APBA3O96018 575 aa18.51■□□□□ 0.55
VPS28-211ENST00000530790 EIF4G2P78344 907 aaKnown RBP eCLIP18.5■□□□□ 0.55
VPS28-211ENST00000530790 IP6K1Q92551 441 aa18.5■□□□□ 0.55
VPS28-211ENST00000530790 RTL1A6NKG5 1358 aa18.5■□□□□ 0.55
VPS28-211ENST00000530790 MAP3K19Q56UN5 1328 aa18.49■□□□□ 0.55
VPS28-211ENST00000530790 NSD3Q9BZ95 1437 aa18.49■□□□□ 0.55
VPS28-211ENST00000530790 FYB1O15117 783 aa18.49■□□□□ 0.55
VPS28-211ENST00000530790 EZH2Q15910 746 aaKnown RBP18.49■□□□□ 0.55
VPS28-211ENST00000530790 GGNBP2Q9H3C7 697 aa18.49■□□□□ 0.55
VPS28-211ENST00000530790 AMPHP49418 695 aa18.48■□□□□ 0.55
VPS28-211ENST00000530790 SRCAPQ6ZRS2 3230 aa18.48■□□□□ 0.55
VPS28-211ENST00000530790 RREB1Q92766 1687 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 EXOC5O00471 708 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 HSPA5P11021 654 aaKnown RBP18.47■□□□□ 0.55
VPS28-211ENST00000530790 IL2RBP14784 551 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 HOXC9P31274 260 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 CAMKK2Q96RR4 588 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 POLR3GLQ9BT43 218 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 BCL9O00512 1426 aa18.47■□□□□ 0.55
VPS28-211ENST00000530790 MARCH10Q8NA82 808 aaPredicted RBP18.46■□□□□ 0.55
VPS28-211ENST00000530790 LTV1Q96GA3 475 aaPredicted RBP18.46■□□□□ 0.55
VPS28-211ENST00000530790 SMG6Q86US8 1419 aaKnown RBP18.44■□□□□ 0.54
VPS28-211ENST00000530790 PSDA5PKW4 1024 aaPredicted RBP18.44■□□□□ 0.54
VPS28-211ENST00000530790 FBLN1P23142 703 aa18.44■□□□□ 0.54
VPS28-211ENST00000530790 RRS1Q15050 365 aaKnown RBP18.44■□□□□ 0.54
VPS28-211ENST00000530790 CARD14Q9BXL6 1004 aa18.44■□□□□ 0.54
VPS28-211ENST00000530790 RGPD3A6NKT7 1758 aaPredicted RBP18.44■□□□□ 0.54
VPS28-211ENST00000530790 RGPD4Q7Z3J3 1758 aa18.44■□□□□ 0.54
VPS28-211ENST00000530790 SBF2Q86WG5 1849 aa18.44■□□□□ 0.54
VPS28-211ENST00000530790 NUP188Q5SRE5 1749 aa18.43■□□□□ 0.54
VPS28-211ENST00000530790 BCL11BQ9C0K0 894 aaPredicted RBP18.42■□□□□ 0.54
VPS28-211ENST00000530790 CGNL1Q0VF96 1302 aa18.42■□□□□ 0.54
VPS28-211ENST00000530790 R3HDM1Q15032 1099 aaKnown RBP18.41■□□□□ 0.54
VPS28-211ENST00000530790 LRP5O75197 1615 aa18.41■□□□□ 0.54
VPS28-211ENST00000530790 FLT4P35916 1363 aa18.41■□□□□ 0.54
VPS28-211ENST00000530790 KIF24Q5T7B8 1368 aa18.41■□□□□ 0.54
VPS28-211ENST00000530790 NHSQ6T4R5 1651 aa18.4■□□□□ 0.54
VPS28-211ENST00000530790 INSRP06213 1382 aa18.38■□□□□ 0.53
VPS28-211ENST00000530790 PLSCR1O15162 318 aa18.37■□□□□ 0.53
VPS28-211ENST00000530790 NBPF14Q5TI25 921 aa18.37■□□□□ 0.53
VPS28-211ENST00000530790 PTF1AQ7RTS3 328 aa18.37■□□□□ 0.53
VPS28-211ENST00000530790 MEGF6O75095 1541 aa18.36■□□□□ 0.53
VPS28-211ENST00000530790 ANKRD26Q9UPS8 1709 aa18.36■□□□□ 0.53
VPS28-211ENST00000530790 RGPD2P0DJD1 1756 aa18.35■□□□□ 0.53
VPS28-211ENST00000530790 HSP90AB2PQ58FF8 381 aa18.35■□□□□ 0.53
VPS28-211ENST00000530790 EMILIN1Q9Y6C2 1016 aa18.35■□□□□ 0.53
VPS28-211ENST00000530790 ACSBG1Q96GR2 724 aa18.34■□□□□ 0.53
VPS28-211ENST00000530790 KCNQ2O43526 872 aa18.33■□□□□ 0.52
VPS28-211ENST00000530790 NBPF6Q5VWK0 638 aa18.33■□□□□ 0.52
VPS28-211ENST00000530790 DDX54Q8TDD1 881 aaKnown RBP18.33■□□□□ 0.52
VPS28-211ENST00000530790 NBPF4Q96M43 638 aa18.33■□□□□ 0.52
VPS28-211ENST00000530790 PPM1GO15355 546 aaPredicted RBP18.32■□□□□ 0.52
VPS28-211ENST00000530790 USHBP1Q8N6Y0 703 aa18.32■□□□□ 0.52
VPS28-211ENST00000530790 RAPGEF4Q8WZA2 1011 aa18.32■□□□□ 0.52
VPS28-211ENST00000530790 PANK3Q9H999 370 aa18.32■□□□□ 0.52
VPS28-211ENST00000530790 NSD2O96028 1365 aa18.31■□□□□ 0.52
VPS28-211ENST00000530790 SHANK3Q9BYB0 1731 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms