RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 ATP13A2Q9NQ11 1180 aa9.52□□□□□ -0.89
C11orf88-204ENST00000529661 CDV3Q9UKY7 258 aaKnown RBP9.52□□□□□ -0.89
C11orf88-204ENST00000529661 PCDHB9Q9Y5E1 797 aa9.52□□□□□ -0.89
C11orf88-204ENST00000529661 CAPN5O15484 640 aaPredicted RBP9.51□□□□□ -0.89
C11orf88-204ENST00000529661 ABL2P42684 1182 aa9.51□□□□□ -0.89
C11orf88-204ENST00000529661 NR1H3Q13133 447 aa9.51□□□□□ -0.89
C11orf88-204ENST00000529661 KCTD15Q96SI1 283 aaPredicted RBP9.51□□□□□ -0.89
C11orf88-204ENST00000529661 RAB15P59190 212 aa9.5□□□□□ -0.89
C11orf88-204ENST00000529661 NBPF20Q3BBV1 942 aa9.5□□□□□ -0.89
C11orf88-204ENST00000529661 TIMP2P16035 220 aa9.49□□□□□ -0.89
C11orf88-204ENST00000529661 FLIIQ13045 1269 aa9.49□□□□□ -0.89
C11orf88-204ENST00000529661 CCDC116Q8IYX3 515 aa9.49□□□□□ -0.89
C11orf88-204ENST00000529661 ZNF775Q96BV0 537 aaPredicted RBP9.49□□□□□ -0.89
C11orf88-204ENST00000529661 ZIC2O95409 532 aaPredicted RBP9.48□□□□□ -0.89
C11orf88-204ENST00000529661 INTS6LQ5JSJ4 861 aaKnown RBP9.48□□□□□ -0.89
C11orf88-204ENST00000529661 ITPKCQ96DU7 683 aa9.48□□□□□ -0.89
C11orf88-204ENST00000529661 ZFAND3Q9H8U3 227 aa9.48□□□□□ -0.89
C11orf88-204ENST00000529661 BMP1P13497 986 aa9.47□□□□□ -0.89
C11orf88-204ENST00000529661 IRF5Q13568 498 aa9.47□□□□□ -0.89
C11orf88-204ENST00000529661 ZNF330Q9Y3S2 320 aaPredicted RBP9.47□□□□□ -0.89
C11orf88-204ENST00000529661 UBTFP17480 764 aaKnown RBP9.46□□□□□ -0.9
C11orf88-204ENST00000529661 PPP1R26Q5T8A7 1209 aaPredicted RBP9.46□□□□□ -0.9
C11orf88-204ENST00000529661 KLF16Q9BXK1 252 aaPredicted RBP9.46□□□□□ -0.9
C11orf88-204ENST00000529661 COG6Q9Y2V7 657 aa9.46□□□□□ -0.9
C11orf88-204ENST00000529661 EMILIN1Q9Y6C2 1016 aa9.46□□□□□ -0.9
C11orf88-204ENST00000529661 C11orf95C9JLR9 678 aaPredicted RBP9.45□□□□□ -0.9
C11orf88-204ENST00000529661 TRIM46Q7Z4K8 759 aa9.45□□□□□ -0.9
C11orf88-204ENST00000529661 POM121Q96HA1 1249 aa9.45□□□□□ -0.9
C11orf88-204ENST00000529661 RAD21O60216 631 aa9.44□□□□□ -0.9
C11orf88-204ENST00000529661 DHX9Q08211 1270 aaKnown RBP9.44□□□□□ -0.9
C11orf88-204ENST00000529661 VAC14Q08AM6 782 aa9.44□□□□□ -0.9
C11orf88-204ENST00000529661 TRIM47Q96LD4 638 aa9.44□□□□□ -0.9
C11orf88-204ENST00000529661 PGPEP1Q9NXJ5 209 aa9.44□□□□□ -0.9
C11orf88-204ENST00000529661 GIGYF1O75420 1035 aaPredicted RBP9.43□□□□□ -0.9
C11orf88-204ENST00000529661 SNRPBP14678 240 aaKnown RBP9.43□□□□□ -0.9
C11orf88-204ENST00000529661 ESPNB1AK53 854 aa9.42□□□□□ -0.9
C11orf88-204ENST00000529661 ZNF592Q92610 1267 aa9.42□□□□□ -0.9
C11orf88-204ENST00000529661 ERVH48-1M5A8F1 160 aa9.41□□□□□ -0.9
C11orf88-204ENST00000529661 MCCD1P59942 119 aaPredicted RBP9.41□□□□□ -0.9
C11orf88-204ENST00000529661 EIF4G2P78344 907 aaKnown RBP eCLIP9.41□□□□□ -0.9
C11orf88-204ENST00000529661 SENP2Q9HC62 589 aa9.41□□□□□ -0.9
C11orf88-204ENST00000529661 TMPRSS4Q9NRS4 437 aa9.41□□□□□ -0.9
C11orf88-204ENST00000529661 WASHC4Q2M389 1173 aa9.4□□□□□ -0.9
C11orf88-204ENST00000529661 MRPL14Q6P1L8 145 aaKnown RBP9.4□□□□□ -0.9
C11orf88-204ENST00000529661 SEPT12Q8IYM1 358 aa9.4□□□□□ -0.9
C11orf88-204ENST00000529661 TIMELESSQ9UNS1 1208 aa9.4□□□□□ -0.9
C11orf88-204ENST00000529661 CBLBQ13191 982 aa9.39□□□□□ -0.91
C11orf88-204ENST00000529661 SCARF1Q14162 830 aa9.39□□□□□ -0.91
C11orf88-204ENST00000529661 ERICH6Q7L0X2 663 aa9.39□□□□□ -0.91
C11orf88-204ENST00000529661 WWC1Q8IX03 1113 aa9.39□□□□□ -0.91
C11orf88-204ENST00000529661 PURBQ96QR8 312 aaKnown RBP9.39□□□□□ -0.91
C11orf88-204ENST00000529661 C6orf118Q5T5N4 469 aa9.38□□□□□ -0.91
C11orf88-204ENST00000529661 MEIOBQ8N635 442 aa9.38□□□□□ -0.91
C11orf88-204ENST00000529661 ZNF784Q8NCA9 323 aaPredicted RBP9.38□□□□□ -0.91
C11orf88-204ENST00000529661 KIFC2Q96AC6 838 aa9.38□□□□□ -0.91
C11orf88-204ENST00000529661 UPP2O95045 317 aa9.37□□□□□ -0.91
C11orf88-204ENST00000529661 RNF20Q5VTR2 975 aa9.37□□□□□ -0.91
C11orf88-204ENST00000529661 ZFP42Q96MM3 310 aa9.37□□□□□ -0.91
C11orf88-204ENST00000529661 CYLDQ9NQC7 956 aa9.37□□□□□ -0.91
C11orf88-204ENST00000529661 BMP2P12643 396 aa9.36□□□□□ -0.91
C11orf88-204ENST00000529661 LINC00528Q8N1L1 170 aa9.36□□□□□ -0.91
C11orf88-204ENST00000529661 CLUAP1Q96AJ1 413 aa9.36□□□□□ -0.91
C11orf88-204ENST00000529661 CEP126Q9P2H0 1117 aa9.36□□□□□ -0.91
C11orf88-204ENST00000529661 PCDHB11Q9Y5F2 797 aa9.35□□□□□ -0.91
C11orf88-204ENST00000529661 SEMA3FQ13275 785 aa9.34□□□□□ -0.91
C11orf88-204ENST00000529661 LCE2AQ5TA79 106 aaPredicted RBP9.34□□□□□ -0.91
C11orf88-204ENST00000529661 Q6ZVU0 165 aa9.34□□□□□ -0.91
C11orf88-204ENST00000529661 AGBL1Q96MI9 1066 aa9.34□□□□□ -0.91
C11orf88-204ENST00000529661 TSEN34Q9BSV6 310 aaKnown RBP9.34□□□□□ -0.91
C11orf88-204ENST00000529661 LILRA1O75019 489 aa9.33□□□□□ -0.92
C11orf88-204ENST00000529661 RELBQ01201 579 aa9.33□□□□□ -0.92
C11orf88-204ENST00000529661 SLFNL1Q499Z3 407 aa9.33□□□□□ -0.92
C11orf88-204ENST00000529661 ADD1P35611 737 aaKnown RBP9.32□□□□□ -0.92
C11orf88-204ENST00000529661 SOX11P35716 441 aa9.32□□□□□ -0.92
C11orf88-204ENST00000529661 RNF135Q8IUD6 432 aa9.32□□□□□ -0.92
C11orf88-204ENST00000529661 TREML4Q6UXN2 200 aa9.31□□□□□ -0.92
C11orf88-204ENST00000529661 CCDC125Q86Z20 511 aa9.31□□□□□ -0.92
C11orf88-204ENST00000529661 TRIM52Q96A61 297 aa9.31□□□□□ -0.92
C11orf88-204ENST00000529661 CCDC85AQ96PX6 553 aaPredicted RBP9.31□□□□□ -0.92
C11orf88-204ENST00000529661 ESF1Q9H501 851 aaKnown RBP9.31□□□□□ -0.92
C11orf88-204ENST00000529661 POM121CA8CG34 1229 aa9.3□□□□□ -0.92
C11orf88-204ENST00000529661 ADH1AP07327 375 aa9.3□□□□□ -0.92
C11orf88-204ENST00000529661 SCTRP47872 440 aa9.3□□□□□ -0.92
C11orf88-204ENST00000529661 NFX1Q12986 1120 aaKnown RBP9.3□□□□□ -0.92
C11orf88-204ENST00000529661 PROSER2Q86WR7 435 aaPredicted RBP9.3□□□□□ -0.92
C11orf88-204ENST00000529661 LCE2CQ5TA81 110 aa9.29□□□□□ -0.92
C11orf88-204ENST00000529661 CC2D2BQ6DHV5 1058 aa9.29□□□□□ -0.92
C11orf88-204ENST00000529661 ZNF395Q9H8N7 513 aaPredicted RBP9.29□□□□□ -0.92
C11orf88-204ENST00000529661 DOLKQ9UPQ8 538 aa9.29□□□□□ -0.92
C11orf88-204ENST00000529661 SOBPA7XYQ1 873 aa9.28□□□□□ -0.92
C11orf88-204ENST00000529661 MAN1A2O60476 641 aa9.28□□□□□ -0.92
C11orf88-204ENST00000529661 ERVK-9P63128 1117 aa9.28□□□□□ -0.92
C11orf88-204ENST00000529661 CDCA7Q9BWT1 371 aaPredicted RBP9.28□□□□□ -0.92
C11orf88-204ENST00000529661 TERTO14746 1132 aaKnown RBP9.27□□□□□ -0.93
C11orf88-204ENST00000529661 SPINT1O43278 529 aa9.27□□□□□ -0.93
C11orf88-204ENST00000529661 WFS1O76024 890 aa9.27□□□□□ -0.93
C11orf88-204ENST00000529661 TSGA10IPQ3SY00 556 aa9.27□□□□□ -0.93
C11orf88-204ENST00000529661 OXLD1Q5BKU9 147 aa9.27□□□□□ -0.93
C11orf88-204ENST00000529661 PHTF2Q8N3S3 785 aa9.27□□□□□ -0.93
C11orf88-204ENST00000529661 INSM2Q96T92 566 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms