RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ROCK2O75116 1388 aaKnown RBP33.84■■■■□ 3.01
CPSF1-202ENST00000527827 ZNF692Q9BU19 519 aaPredicted RBP33.83■■■■□ 3.01
CPSF1-202ENST00000527827 WDR17Q8IZU2 1322 aa33.82■■■■□ 3.01
CPSF1-202ENST00000527827 DDB1Q16531 1140 aa33.82■■■■□ 3
CPSF1-202ENST00000527827 ARHGEF25Q86VW2 580 aa33.82■■■■□ 3
CPSF1-202ENST00000527827 RGPD3A6NKT7 1758 aaPredicted RBP33.81■■■■□ 3
CPSF1-202ENST00000527827 RGPD4Q7Z3J3 1758 aa33.81■■■■□ 3
CPSF1-202ENST00000527827 NEUROD1Q13562 356 aa33.79■■■■□ 3
CPSF1-202ENST00000527827 TTC21AQ8NDW8 1320 aa33.78■■■■□ 3
CPSF1-202ENST00000527827 KCNH5Q8NCM2 988 aa33.77■■■■□ 3
CPSF1-202ENST00000527827 NFAT5O94916 1531 aa33.75■■■□□ 2.99
CPSF1-202ENST00000527827 PLSCR1O15162 318 aa33.75■■■□□ 2.99
CPSF1-202ENST00000527827 SOX12O15370 315 aa33.75■■■□□ 2.99
CPSF1-202ENST00000527827 PTF1AQ7RTS3 328 aa33.75■■■□□ 2.99
CPSF1-202ENST00000527827 MARCH10Q8NA82 808 aaPredicted RBP33.74■■■□□ 2.99
CPSF1-202ENST00000527827 CDCA7Q9BWT1 371 aaPredicted RBP33.73■■■□□ 2.99
CPSF1-202ENST00000527827 MON2Q7Z3U7 1717 aa33.73■■■□□ 2.99
CPSF1-202ENST00000527827 KTN1Q86UP2 1357 aaKnown RBP33.72■■■□□ 2.99
CPSF1-202ENST00000527827 CARD10Q9BWT7 1032 aa33.72■■■□□ 2.99
CPSF1-202ENST00000527827 BCL11BQ9C0K0 894 aaPredicted RBP33.72■■■□□ 2.99
CPSF1-202ENST00000527827 BCL9O00512 1426 aa33.71■■■□□ 2.99
CPSF1-202ENST00000527827 CSB-PGBD3P0DP91 1061 aa33.69■■■□□ 2.98
CPSF1-202ENST00000527827 SPON1Q9HCB6 807 aa33.69■■■□□ 2.98
CPSF1-202ENST00000527827 KCNQ2O43526 872 aa33.68■■■□□ 2.98
CPSF1-202ENST00000527827 ANO8Q9HCE9 1232 aaPredicted RBP33.67■■■□□ 2.98
CPSF1-202ENST00000527827 SBNO2Q9Y2G9 1366 aa33.67■■■□□ 2.98
CPSF1-202ENST00000527827 ABCC6O95255 1503 aa33.67■■■□□ 2.98
CPSF1-202ENST00000527827 USP54Q70EL1 1684 aa33.65■■■□□ 2.98
CPSF1-202ENST00000527827 PROM2Q8N271 834 aa33.65■■■□□ 2.98
CPSF1-202ENST00000527827 CD163L1Q9NR16 1453 aa33.63■■■□□ 2.97
CPSF1-202ENST00000527827 USP31Q70CQ4 1352 aa33.63■■■□□ 2.97
CPSF1-202ENST00000527827 CASZ1Q86V15 1759 aa33.63■■■□□ 2.97
CPSF1-202ENST00000527827 CCDC7Q96M83 1385 aa33.62■■■□□ 2.97
CPSF1-202ENST00000527827 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.62■■■□□ 2.97
CPSF1-202ENST00000527827 EXOC5O00471 708 aa33.61■■■□□ 2.97
CPSF1-202ENST00000527827 PPP1R1BQ9UD71 204 aaPredicted RBP33.6■■■□□ 2.97
CPSF1-202ENST00000527827 NME9Q86XW9 330 aa33.58■■■□□ 2.97
CPSF1-202ENST00000527827 TNS2Q63HR2 1409 aa33.58■■■□□ 2.97
CPSF1-202ENST00000527827 LTN1O94822 1766 aa33.57■■■□□ 2.97
CPSF1-202ENST00000527827 CARD11Q9BXL7 1154 aa33.57■■■□□ 2.96
CPSF1-202ENST00000527827 PDGFDQ9GZP0 370 aaPredicted RBP33.56■■■□□ 2.96
CPSF1-202ENST00000527827 NINLQ9Y2I6 1382 aa33.55■■■□□ 2.96
CPSF1-202ENST00000527827 ERBB3P21860 1342 aa33.54■■■□□ 2.96
CPSF1-202ENST00000527827 TXNRD1Q16881 649 aa33.53■■■□□ 2.96
CPSF1-202ENST00000527827 TMC1Q8TDI8 760 aa33.52■■■□□ 2.96
CPSF1-202ENST00000527827 SLC12A5Q9H2X9 1139 aa33.52■■■□□ 2.96
CPSF1-202ENST00000527827 NHSQ6T4R5 1651 aa33.52■■■□□ 2.96
CPSF1-202ENST00000527827 EDC4Q6P2E9 1401 aaKnown RBP33.49■■■□□ 2.95
CPSF1-202ENST00000527827 HDGFL2Q7Z4V5 671 aaPredicted RBP33.49■■■□□ 2.95
CPSF1-202ENST00000527827 NLRP2Q9NX02 1062 aa33.49■■■□□ 2.95
CPSF1-202ENST00000527827 YY1P25490 414 aa33.47■■■□□ 2.95
CPSF1-202ENST00000527827 ZBTB7AO95365 584 aa33.46■■■□□ 2.95
CPSF1-202ENST00000527827 STK32BQ9NY57 414 aa33.46■■■□□ 2.95
CPSF1-202ENST00000527827 A0A1W2PP64 1363 aa33.46■■■□□ 2.95
CPSF1-202ENST00000527827 SLC15A2Q16348 729 aa33.45■■■□□ 2.95
CPSF1-202ENST00000527827 ANKRD24Q8TF21 1146 aa33.45■■■□□ 2.95
CPSF1-202ENST00000527827 IL2RBP14784 551 aa33.44■■■□□ 2.94
CPSF1-202ENST00000527827 ACSBG1Q96GR2 724 aa33.44■■■□□ 2.94
CPSF1-202ENST00000527827 MYOM1P52179 1685 aa33.44■■■□□ 2.94
CPSF1-202ENST00000527827 PTGER2P43116 358 aa33.43■■■□□ 2.94
CPSF1-202ENST00000527827 PUS7Q96PZ0 661 aaKnown RBP33.42■■■□□ 2.94
CPSF1-202ENST00000527827 TERF2IPQ9NYB0 399 aa33.42■■■□□ 2.94
CPSF1-202ENST00000527827 BTAF1O14981 1849 aa33.4■■■□□ 2.94
CPSF1-202ENST00000527827 TONSLQ96HA7 1378 aa33.4■■■□□ 2.94
CPSF1-202ENST00000527827 ATF5Q9Y2D1 282 aaPredicted RBP33.4■■■□□ 2.94
CPSF1-202ENST00000527827 DCAF8L1A6NGE4 600 aa33.39■■■□□ 2.94
CPSF1-202ENST00000527827 KAT6BQ8WYB5 2073 aa33.39■■■□□ 2.94
CPSF1-202ENST00000527827 PAPPAQ13219 1627 aa33.38■■■□□ 2.93
CPSF1-202ENST00000527827 IP6K1Q92551 441 aa33.35■■■□□ 2.93
CPSF1-202ENST00000527827 TESK2Q96S53 571 aa33.34■■■□□ 2.93
CPSF1-202ENST00000527827 FAM208AQ9UK61 1670 aaKnown RBP33.33■■■□□ 2.93
CPSF1-202ENST00000527827 MTFR1LQ9H019 292 aa33.32■■■□□ 2.92
CPSF1-202ENST00000527827 SGIP1Q9BQI5 828 aa33.31■■■□□ 2.92
CPSF1-202ENST00000527827 ST20-MTHFSA0A0A6YYL1 179 aa33.28■■■□□ 2.92
CPSF1-202ENST00000527827 LTV1Q96GA3 475 aaPredicted RBP33.28■■■□□ 2.92
CPSF1-202ENST00000527827 FHDC1Q9C0D6 1143 aaPredicted RBP33.27■■■□□ 2.92
CPSF1-202ENST00000527827 LRRC4BQ9NT99 713 aa33.27■■■□□ 2.92
CPSF1-202ENST00000527827 SYT17Q9BSW7 474 aa33.26■■■□□ 2.91
CPSF1-202ENST00000527827 MAP3K19Q56UN5 1328 aa33.26■■■□□ 2.91
CPSF1-202ENST00000527827 ZNF827Q17R98 1081 aa33.25■■■□□ 2.91
CPSF1-202ENST00000527827 DDX54Q8TDD1 881 aaKnown RBP33.25■■■□□ 2.91
CPSF1-202ENST00000527827 RGPD2P0DJD1 1756 aa33.24■■■□□ 2.91
CPSF1-202ENST00000527827 FBLN1P23142 703 aa33.24■■■□□ 2.91
CPSF1-202ENST00000527827 COG3Q96JB2 828 aa33.24■■■□□ 2.91
CPSF1-202ENST00000527827 HOXC9P31274 260 aa33.22■■■□□ 2.91
CPSF1-202ENST00000527827 SHANK3Q9BYB0 1731 aa33.2■■■□□ 2.91
CPSF1-202ENST00000527827 AKT1S1Q96B36 256 aa33.19■■■□□ 2.9
CPSF1-202ENST00000527827 AMPHP49418 695 aa33.18■■■□□ 2.9
CPSF1-202ENST00000527827 QSER1Q2KHR3 1735 aa33.18■■■□□ 2.9
CPSF1-202ENST00000527827 DOT1LQ8TEK3 1739 aa33.18■■■□□ 2.9
CPSF1-202ENST00000527827 ANKRD36BQ8N2N9 1353 aa33.18■■■□□ 2.9
CPSF1-202ENST00000527827 SLC24A1O60721 1099 aa33.17■■■□□ 2.9
CPSF1-202ENST00000527827 ARXQ96QS3 562 aa33.17■■■□□ 2.9
CPSF1-202ENST00000527827 SLC27A3Q5K4L6 730 aa33.16■■■□□ 2.9
CPSF1-202ENST00000527827 MEGF6O75095 1541 aa33.14■■■□□ 2.9
CPSF1-202ENST00000527827 LY75O60449 1722 aa33.14■■■□□ 2.89
CPSF1-202ENST00000527827 MAP3K5Q99683 1374 aa33.13■■■□□ 2.89
CPSF1-202ENST00000527827 PRIM1P49642 420 aaKnown RBP33.13■■■□□ 2.89
CPSF1-202ENST00000527827 TUBGCP6Q96RT7 1819 aa33.13■■■□□ 2.89
CPSF1-202ENST00000527827 NSD2O96028 1365 aa33.12■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms